mRNA_15196 (mRNA) Tribonema minus UTEX_B_3156
Overview
Homology
BLAST of jgi.p|Trimin1|353115 vs. uniprot
Match: A0A836CKB1_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CKB1_9STRA) HSP 1 Score: 226 bits (575), Expect = 6.430e-75 Identity = 110/110 (100.00%), Postives = 110/110 (100.00%), Query Frame = 1 Query: 1 MGMIFLSIVGGLFLVQPFYTCPELAADDGTGNAAKSCFWAVAVYAGVLVASVFGMYWDGRAGAGRGKQGAYMSAERGIDPMEAEGLLSREPASPDHADYLAGYGAVSGRR 330 MGMIFLSIVGGLFLVQPFYTCPELAADDGTGNAAKSCFWAVAVYAGVLVASVFGMYWDGRAGAGRGKQGAYMSAERGIDPMEAEGLLSREPASPDHADYLAGYGAVSGRR Sbjct: 1 MGMIFLSIVGGLFLVQPFYTCPELAADDGTGNAAKSCFWAVAVYAGVLVASVFGMYWDGRAGAGRGKQGAYMSAERGIDPMEAEGLLSREPASPDHADYLAGYGAVSGRR 110
BLAST of jgi.p|Trimin1|353115 vs. uniprot
Match: A0A835ZDG0_9STRA (CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZDG0_9STRA) HSP 1 Score: 468 bits (1205), Expect = 1.230e-166 Identity = 236/236 (100.00%), Postives = 236/236 (100.00%), Query Frame = 1 Query: 1 MRGGGADEGVNSRKHRTISRTAPGLLVVGEGSLAEVEGVNTPTLWNVPNILTLARLICVPILGFLFYAPIANRNIWCAALFAGAAITDWLDGWWARKFNIASPFGAFLDPVADKLIVAVAMILLSERLGEWMTVCTSIILCREIAVSALREWMAQIGARGVVKVGMAGKCKTAAQMVALTTLLLLQPSAAPAILPPVAFDAGKWLMIFSAVLTVTSGTGYLQAAWPALMGKDAHGK 708 MRGGGADEGVNSRKHRTISRTAPGLLVVGEGSLAEVEGVNTPTLWNVPNILTLARLICVPILGFLFYAPIANRNIWCAALFAGAAITDWLDGWWARKFNIASPFGAFLDPVADKLIVAVAMILLSERLGEWMTVCTSIILCREIAVSALREWMAQIGARGVVKVGMAGKCKTAAQMVALTTLLLLQPSAAPAILPPVAFDAGKWLMIFSAVLTVTSGTGYLQAAWPALMGKDAHGK Sbjct: 1 MRGGGADEGVNSRKHRTISRTAPGLLVVGEGSLAEVEGVNTPTLWNVPNILTLARLICVPILGFLFYAPIANRNIWCAALFAGAAITDWLDGWWARKFNIASPFGAFLDPVADKLIVAVAMILLSERLGEWMTVCTSIILCREIAVSALREWMAQIGARGVVKVGMAGKCKTAAQMVALTTLLLLQPSAAPAILPPVAFDAGKWLMIFSAVLTVTSGTGYLQAAWPALMGKDAHGK 236
BLAST of jgi.p|Trimin1|353115 vs. uniprot
Match: A0A6H5L2F5_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L2F5_9PHAE) HSP 1 Score: 258 bits (660), Expect = 3.450e-82 Identity = 128/200 (64.00%), Postives = 160/200 (80.00%), Query Frame = 1 Query: 97 LAEVEGVNTPTLWNVPNILTLARLICVPILGFLFYAPIANRNIWCAALFAGAAITDWLDGWWARKFNIASPFGAFLDPVADKLIVAVAMILLSERLGEWMTVCTSIILCREIAVSALREWMAQIGARGVVKVGMAGKCKTAAQMVALTTLLLLQPSAAPAIL-PPVAFDAGKWLMIFSAVLTVTSGTGYLQAAWPALMGK 693 +A++E TLWNVPNILT+AR++ +P+ +FYA + RNIWC+A+FAGAA TDWLDG+ AR+ I +PFG+FLDPVADKL+V+ A+ILLSERLG WMTVC++IILCRE+A+SALREWMAQ+G R VKVG AGK KTA QM+A+T LLLL+P AA ++ P A K L+ S VLTVTSG+GYL+AAWPALMGK Sbjct: 144 VAKLESAAATTLWNVPNILTMARVMAIPVFATIFYASLPRRNIWCSAIFAGAAFTDWLDGYIARRQGIVTPFGSFLDPVADKLLVSTALILLSERLGPWMTVCSAIILCRELAISALREWMAQLGLRETVKVGNAGKWKTATQMMAITMLLLLEPGAAVTLVNPATAMPIAKSLLYVSTVLTVTSGSGYLKAAWPALMGK 343
BLAST of jgi.p|Trimin1|353115 vs. uniprot
Match: W7TJV8_9STRA (Cdp-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TJV8_9STRA) HSP 1 Score: 207 bits (528), Expect = 2.890e-62 Identity = 115/207 (55.56%), Postives = 147/207 (71.01%), Query Frame = 1 Query: 79 VVGEGSLAEVEGVNTPTLWNVPNILTLARLICVPILGFLFYAPIANRNIWCAALFAGAAITDWLDGWWARKFNIASPFGAFLDPVADKLIVAVAMILLSERLGE-WMTVCTSIILCREIAVSALREWMAQIGARGVVKVGMAGKCKTAAQMVALTTLLLLQPS-AAPAILPPVAFDAGKWLMIFSAVLTVTSGTGYLQAAWPALMGK 693 + G G+ A G N P+LWN+PNILTL R+I +P+L ++Y + RN C+ LF AA+TDWLDG+ AR+ N++SP GAFLDPVADKL+VA A++L+++RL +TV T+II+CREI VSALREWMA GAR V VG GK KTA QM+AL+ LL +QP A+ L + G L+ FSAVLTV S GY+QAAWPAL GK Sbjct: 140 MAGGGNAASNRG-NEPSLWNLPNILTLLRVISIPVLIIIYYTSASWRNAACSGLFVFAAMTDWLDGYLARRMNLSSPLGAFLDPVADKLMVATALVLMADRLNSPVVTVSTAIIICREIGVSALREWMASQGARDTVAVGWWGKFKTATQMLALSVLLYVQPPLASHDALAHKLLEVGVGLLAFSAVLTVYSAVGYVQAAWPALTGK 345
BLAST of jgi.p|Trimin1|353115 vs. uniprot
Match: A0A7S2V0D2_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V0D2_9STRA) HSP 1 Score: 203 bits (516), Expect = 3.850e-62 Identity = 113/195 (57.95%), Postives = 136/195 (69.74%), Query Frame = 1 Query: 115 VNTPTLWNVPNILTLARLICVPILGFLFYAPIANRNIWCAALFAGAAITDWLDGWWARKFNIASPFGAFLDPVADKLIVAVAMILLSERLGEWMT-VCTSIILCREIAVSALREWMAQIGARGVVKVGMAGKCKTAAQMVALTTLLLLQPSAAPAILPPVAFDAGKWLMIFSAVLTVTSGTGYLQAAWPALMGKD 696 V LWN+PNILT+ R++ +PI F+FY P+ RN AA+FA A+ TDWLDG+ ARK+ I SPFGAFLDPVADKL+VA A++LL+ G W+ V +IIL REI VSALREWMA G R V+VGMAGK KTA QMV+L LLL Q A + + A L+ S VLTVTSG GYLQAAWPAL GK+ Sbjct: 22 VQIDNLWNIPNILTMLRVVAIPIFAFVFYLPVPWRNKATAAIFAVASATDWLDGYLARKWKITSPFGAFLDPVADKLMVASALVLLAGSEGGWVVAVPAAIILAREITVSALREWMAGRGERSKVQVGMAGKVKTACQMVSLILLLLAQKGADCPLPVSLLHPAALALLYLSTVLTVTSGWGYLQAAWPALSGKE 216
BLAST of jgi.p|Trimin1|353115 vs. uniprot
Match: A0A7S2UZN3_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UZN3_9STRA) HSP 1 Score: 203 bits (516), Expect = 1.140e-60 Identity = 113/195 (57.95%), Postives = 136/195 (69.74%), Query Frame = 1 Query: 115 VNTPTLWNVPNILTLARLICVPILGFLFYAPIANRNIWCAALFAGAAITDWLDGWWARKFNIASPFGAFLDPVADKLIVAVAMILLSERLGEWMT-VCTSIILCREIAVSALREWMAQIGARGVVKVGMAGKCKTAAQMVALTTLLLLQPSAAPAILPPVAFDAGKWLMIFSAVLTVTSGTGYLQAAWPALMGKD 696 V LWN+PNILT+ R++ +PI F+FY P+ RN AA+FA A+ TDWLDG+ ARK+ I SPFGAFLDPVADKL+VA A++LL+ G W+ V +IIL REI VSALREWMA G R V+VGMAGK KTA QMV+L LLL Q A + + A L+ S VLTVTSG GYLQAAWPAL GK+ Sbjct: 135 VQIDNLWNIPNILTMLRVVAIPIFAFVFYLPVPWRNKATAAIFAVASATDWLDGYLARKWKITSPFGAFLDPVADKLMVASALVLLAGSEGGWVVAVPAAIILAREITVSALREWMAGRGERSKVQVGMAGKVKTACQMVSLILLLLAQKGADCPLPVSLLHPAALALLYLSTVLTVTSGWGYLQAAWPALSGKE 329
BLAST of jgi.p|Trimin1|353115 vs. uniprot
Match: A0A521V6W3_9GAMM (CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase n=2 Tax=Xanthomonadaceae TaxID=32033 RepID=A0A521V6W3_9GAMM) HSP 1 Score: 179 bits (453), Expect = 6.990e-53 Identity = 99/191 (51.83%), Postives = 129/191 (67.54%), Query Frame = 1 Query: 136 NVPNILTLARLICVPILGFLFYAPIANRNIWCAALFAGAAITDWLDGWWARKFNIASPFGAFLDPVADKLIVAVAMILLSE-RLGEWMTVCTSIILCREIAVSALREWMAQIGARGVVKVGMAGKCKTAAQMVALTTLLL-LQPSAAPAILP---PVAFDAGKWLMIFSAVLTVTSGTGYLQAAWPALMGK 693 +P ILTL R+ +P+L +++ P N AA+FA A+ITDWLDGW AR+F + S FGAFLDPVADKL+V+ A+ L+ + WM + ++I+ REIAVSALREWMA++G RG V V GK KT AQMVALT LL + PS P P + F G WL+ +A+LT+ SG GYL+AAWP+L GK Sbjct: 4 TLPTILTLIRIALIPVLAAVYFLPYGWTNFAAAAVFAFASITDWLDGWIARRFGMTSAFGAFLDPVADKLMVSTALFLIVQGHPTAWMALWAAVIVGREIAVSALREWMAEVGQRGKVAVAAIGKFKTVAQMVALTCLLYSVTPSQPPHPTPWMGNLIFHIGDWLLAIAALLTLWSGLGYLRAAWPSLQGK 194
BLAST of jgi.p|Trimin1|353115 vs. uniprot
Match: A0A7Y5D988_LYSSP (CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase n=1 Tax=Lysobacter sp. TaxID=72226 RepID=A0A7Y5D988_LYSSP) HSP 1 Score: 179 bits (454), Expect = 7.610e-53 Identity = 101/190 (53.16%), Postives = 129/190 (67.89%), Query Frame = 1 Query: 136 NVPNILTLARLICVPILGFLFYAPIANRNIWCAALFAGAAITDWLDGWWARKFNIASPFGAFLDPVADKLIVAVAMILLSE-RLGEWMTVCTSIILCREIAVSALREWMAQIGARGVVKVGMAGKCKTAAQMVALTTLLL-LQPSAAPAILP-PVAFDAGKWLMIFSAVLTVTSGTGYLQAAWPALMGKD 696 VP +LTLAR++ +P+L +FY P N AA+FA AA+TDWLDGW AR++++ S FGAFLDPVADKL+VAVA+ L+ + WM ++I+ REIAVSALREWMA+IG R VKV + GK KT AQM AL LL + P PA P V F G W++ +A+LT+ SG YL AAWPALM + Sbjct: 4 TVPTMLTLARIVMIPVLVLVFYLPYKWSNFASAAVFALAAVTDWLDGWIARRYDLHSAFGAFLDPVADKLMVAVALFLIVQGHPTPWMAFWAAVIVGREIAVSALREWMAEIGQRATVKVAVIGKIKTMAQMFALLCLLYSVVPGVKPAPWPGDVIFHTGDWMLAAAALLTLWSGAQYLIAAWPALMADE 193
BLAST of jgi.p|Trimin1|353115 vs. uniprot
Match: UPI001389785E (CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase n=1 Tax=Pseudoxanthomonas taiwanensis TaxID=176598 RepID=UPI001389785E) HSP 1 Score: 178 bits (452), Expect = 1.430e-52 Identity = 100/190 (52.63%), Postives = 125/190 (65.79%), Query Frame = 1 Query: 142 PNILTLARLICVPILGFLFYAPIANRNIWCAALFAGAAITDWLDGWWARKFNIASPFGAFLDPVADKLIVAVAMILLSE-RLGEWMTVCTSIILCREIAVSALREWMAQIGARGVVKVGMAGKCKTAAQMVALTTLLL-LQPSAAPA--ILPPVAFDAGKWLMIFSAVLTVTSGTGYLQAAWPALMGKDA 699 P LTLAR++ +P+L +FY P N A +F AA+TDWLDGWWAR++ S FGAFLDPVADK++VAVA+ L+ + WM ++I+ REIAVSALREWMA+IG R VKV M GK KT AQMVAL LL + P+ AP L F G WL+ +A+LT+ SG YL AAWPAL +A Sbjct: 6 PTWLTLARIVMIPVLVLVFYLPYRWTNFAAAGVFILAAVTDWLDGWWARRYQQHSAFGAFLDPVADKMMVAVALFLIVQGHPTPWMAFWAAVIVGREIAVSALREWMAEIGQRATVKVAMIGKIKTTAQMVALACLLYSVSPNRAPTGIWLGEFVFHVGDWLLAIAALLTLWSGGQYLYAAWPALRADEA 195
BLAST of jgi.p|Trimin1|353115 vs. uniprot
Match: A0A370DFG8_9GAMM (CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase n=6 Tax=Bacteria TaxID=2 RepID=A0A370DFG8_9GAMM) HSP 1 Score: 176 bits (447), Expect = 4.970e-52 Identity = 96/189 (50.79%), Postives = 130/189 (68.78%), Query Frame = 1 Query: 130 LWNVPNILTLARLICVPILGFLFYAPIANRNIWCAALFAGAAITDWLDGWWARKFNIASPFGAFLDPVADKLIVAVAMILLSE-RLGEWMTVCTSIILCREIAVSALREWMAQIGARGVVKVGMAGKCKTAAQMVALTTLLLLQPSAAPAILPPVAFDAGKWLMIFSAVLTVTSGTGYLQAAWPALMGK 693 +WN+PN+LTL R++ +P+ +FY P+ I CAA+FA AA+TDWLDG+ AR++ SPFGAFLDPVADKL+VAVA++LL + W+ + +II+ REI +SALREWMA +GAR V V + GK KTAAQM+A+ L++ Q I G L+ SA+LT+ S YL+AAWP+LMGK Sbjct: 1 MWNIPNLLTLLRIVLIPVFVLIFYLPVEWARIGCAAVFALAAVTDWLDGFLARRWGQVSPFGAFLDPVADKLMVAVALLLLVQSEPTPWLALPAAIIIGREITISALREWMAALGARAQVAVSVIGKFKTAAQMLAILLLIIQQDLWGLPI-----HTVGFVLLYISAILTLWSMVIYLRAAWPSLMGK 184
BLAST of jgi.p|Trimin1|353115 vs. uniprot
Match: A0A5B2ZB81_9GAMM (CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase n=1 Tax=Arenimonas fontis TaxID=2608255 RepID=A0A5B2ZB81_9GAMM) HSP 1 Score: 176 bits (445), Expect = 7.760e-52 Identity = 97/187 (51.87%), Postives = 126/187 (67.38%), Query Frame = 1 Query: 136 NVPNILTLARLICVPILGFLFYAPIANRNIWCAALFAGAAITDWLDGWWARKFNIASPFGAFLDPVADKLIVAVAMILLSERLGE-WMTVCTSIILCREIAVSALREWMAQIGARGVVKVGMAGKCKTAAQMVALTTLLLLQPSAAPAILPPVAFDAGKWLMIFSAVLTVTSGTGYLQAAWPALMGK 693 +P +LTL R++ +P+L +FY P A NI AA+F A TDWLDGW AR+F + S FGAFLDPVADKL VA A++L+ ER WM + ++II+ REI +SALREWMAQ+GA G+VKV GK KT QMVA+T LL + +L F G+WL+ +A LT+ SG YL+AAWPA+ K Sbjct: 4 TIPTLLTLFRILLIPVLVAVFYLPYAWTNIAAAAIFLLGASTDWLDGWIARRFRMFSAFGAFLDPVADKLTVAFALLLVVERHDTPWMALLSAIIIGREITISALREWMAQVGAHGLVKVAGLGKLKTIVQMVAITCLLFEED-----LLGLPVFRIGEWLLAVAATLTLWSGWDYLRAAWPAMRQK 185 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|353115 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 1
BLAST of jgi.p|Trimin1|353115 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_15196 ID=mRNA_15196|Name=jgi.p|Trimin1|353115|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=337bp|location=Sequence derived from alignment at Contig_145:83888..85850- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. ATGGGCATGATATTTCTGTCCATAGTTGGCGGACTGTTCTTGGTGCAGCCback to top protein sequence of jgi.p|Trimin1|353115 >Trimin1|353115|estExt_Genemark1.C_Ctg_1450013 ID=Trimin1|353115|estExt_Genemark1.C_Ctg_1450013|Name=jgi.p|Trimin1|353115|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=111bp MGMIFLSIVGGLFLVQPFYTCPELAADDGTGNAAKSCFWAVAVYAGVLVAback to top mRNA from alignment at Contig_145:83888..85850- Legend: polypeptideexonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_15196 ID=mRNA_15196|Name=jgi.p|Trimin1|353115|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1963bp|location=Sequence derived from alignment at Contig_145:83888..85850- (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_145:83888..85850- >mRNA_15196 ID=mRNA_15196|Name=jgi.p|Trimin1|353115|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=333bp|location=Sequence derived from alignment at Contig_145:83888..85850- (Tribonema minus UTEX_B_3156 )back to top |