mRNA_15196 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|353115
Unique NamemRNA_15196
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
BLAST of jgi.p|Trimin1|353115 vs. uniprot
Match: A0A836CKB1_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CKB1_9STRA)

HSP 1 Score: 226 bits (575), Expect = 6.430e-75
Identity = 110/110 (100.00%), Postives = 110/110 (100.00%), Query Frame = 1
Query:    1 MGMIFLSIVGGLFLVQPFYTCPELAADDGTGNAAKSCFWAVAVYAGVLVASVFGMYWDGRAGAGRGKQGAYMSAERGIDPMEAEGLLSREPASPDHADYLAGYGAVSGRR 330
            MGMIFLSIVGGLFLVQPFYTCPELAADDGTGNAAKSCFWAVAVYAGVLVASVFGMYWDGRAGAGRGKQGAYMSAERGIDPMEAEGLLSREPASPDHADYLAGYGAVSGRR
Sbjct:    1 MGMIFLSIVGGLFLVQPFYTCPELAADDGTGNAAKSCFWAVAVYAGVLVASVFGMYWDGRAGAGRGKQGAYMSAERGIDPMEAEGLLSREPASPDHADYLAGYGAVSGRR 110          
BLAST of jgi.p|Trimin1|353115 vs. uniprot
Match: A0A835ZDG0_9STRA (CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZDG0_9STRA)

HSP 1 Score: 468 bits (1205), Expect = 1.230e-166
Identity = 236/236 (100.00%), Postives = 236/236 (100.00%), Query Frame = 1
Query:    1 MRGGGADEGVNSRKHRTISRTAPGLLVVGEGSLAEVEGVNTPTLWNVPNILTLARLICVPILGFLFYAPIANRNIWCAALFAGAAITDWLDGWWARKFNIASPFGAFLDPVADKLIVAVAMILLSERLGEWMTVCTSIILCREIAVSALREWMAQIGARGVVKVGMAGKCKTAAQMVALTTLLLLQPSAAPAILPPVAFDAGKWLMIFSAVLTVTSGTGYLQAAWPALMGKDAHGK 708
            MRGGGADEGVNSRKHRTISRTAPGLLVVGEGSLAEVEGVNTPTLWNVPNILTLARLICVPILGFLFYAPIANRNIWCAALFAGAAITDWLDGWWARKFNIASPFGAFLDPVADKLIVAVAMILLSERLGEWMTVCTSIILCREIAVSALREWMAQIGARGVVKVGMAGKCKTAAQMVALTTLLLLQPSAAPAILPPVAFDAGKWLMIFSAVLTVTSGTGYLQAAWPALMGKDAHGK
Sbjct:    1 MRGGGADEGVNSRKHRTISRTAPGLLVVGEGSLAEVEGVNTPTLWNVPNILTLARLICVPILGFLFYAPIANRNIWCAALFAGAAITDWLDGWWARKFNIASPFGAFLDPVADKLIVAVAMILLSERLGEWMTVCTSIILCREIAVSALREWMAQIGARGVVKVGMAGKCKTAAQMVALTTLLLLQPSAAPAILPPVAFDAGKWLMIFSAVLTVTSGTGYLQAAWPALMGKDAHGK 236          
BLAST of jgi.p|Trimin1|353115 vs. uniprot
Match: A0A6H5L2F5_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L2F5_9PHAE)

HSP 1 Score: 258 bits (660), Expect = 3.450e-82
Identity = 128/200 (64.00%), Postives = 160/200 (80.00%), Query Frame = 1
Query:   97 LAEVEGVNTPTLWNVPNILTLARLICVPILGFLFYAPIANRNIWCAALFAGAAITDWLDGWWARKFNIASPFGAFLDPVADKLIVAVAMILLSERLGEWMTVCTSIILCREIAVSALREWMAQIGARGVVKVGMAGKCKTAAQMVALTTLLLLQPSAAPAIL-PPVAFDAGKWLMIFSAVLTVTSGTGYLQAAWPALMGK 693
            +A++E     TLWNVPNILT+AR++ +P+   +FYA +  RNIWC+A+FAGAA TDWLDG+ AR+  I +PFG+FLDPVADKL+V+ A+ILLSERLG WMTVC++IILCRE+A+SALREWMAQ+G R  VKVG AGK KTA QM+A+T LLLL+P AA  ++ P  A    K L+  S VLTVTSG+GYL+AAWPALMGK
Sbjct:  144 VAKLESAAATTLWNVPNILTMARVMAIPVFATIFYASLPRRNIWCSAIFAGAAFTDWLDGYIARRQGIVTPFGSFLDPVADKLLVSTALILLSERLGPWMTVCSAIILCRELAISALREWMAQLGLRETVKVGNAGKWKTATQMMAITMLLLLEPGAAVTLVNPATAMPIAKSLLYVSTVLTVTSGSGYLKAAWPALMGK 343          
BLAST of jgi.p|Trimin1|353115 vs. uniprot
Match: W7TJV8_9STRA (Cdp-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TJV8_9STRA)

HSP 1 Score: 207 bits (528), Expect = 2.890e-62
Identity = 115/207 (55.56%), Postives = 147/207 (71.01%), Query Frame = 1
Query:   79 VVGEGSLAEVEGVNTPTLWNVPNILTLARLICVPILGFLFYAPIANRNIWCAALFAGAAITDWLDGWWARKFNIASPFGAFLDPVADKLIVAVAMILLSERLGE-WMTVCTSIILCREIAVSALREWMAQIGARGVVKVGMAGKCKTAAQMVALTTLLLLQPS-AAPAILPPVAFDAGKWLMIFSAVLTVTSGTGYLQAAWPALMGK 693
            + G G+ A   G N P+LWN+PNILTL R+I +P+L  ++Y   + RN  C+ LF  AA+TDWLDG+ AR+ N++SP GAFLDPVADKL+VA A++L+++RL    +TV T+II+CREI VSALREWMA  GAR  V VG  GK KTA QM+AL+ LL +QP  A+   L     + G  L+ FSAVLTV S  GY+QAAWPAL GK
Sbjct:  140 MAGGGNAASNRG-NEPSLWNLPNILTLLRVISIPVLIIIYYTSASWRNAACSGLFVFAAMTDWLDGYLARRMNLSSPLGAFLDPVADKLMVATALVLMADRLNSPVVTVSTAIIICREIGVSALREWMASQGARDTVAVGWWGKFKTATQMLALSVLLYVQPPLASHDALAHKLLEVGVGLLAFSAVLTVYSAVGYVQAAWPALTGK 345          
BLAST of jgi.p|Trimin1|353115 vs. uniprot
Match: A0A7S2V0D2_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V0D2_9STRA)

HSP 1 Score: 203 bits (516), Expect = 3.850e-62
Identity = 113/195 (57.95%), Postives = 136/195 (69.74%), Query Frame = 1
Query:  115 VNTPTLWNVPNILTLARLICVPILGFLFYAPIANRNIWCAALFAGAAITDWLDGWWARKFNIASPFGAFLDPVADKLIVAVAMILLSERLGEWMT-VCTSIILCREIAVSALREWMAQIGARGVVKVGMAGKCKTAAQMVALTTLLLLQPSAAPAILPPVAFDAGKWLMIFSAVLTVTSGTGYLQAAWPALMGKD 696
            V    LWN+PNILT+ R++ +PI  F+FY P+  RN   AA+FA A+ TDWLDG+ ARK+ I SPFGAFLDPVADKL+VA A++LL+   G W+  V  +IIL REI VSALREWMA  G R  V+VGMAGK KTA QMV+L  LLL Q  A   +   +   A   L+  S VLTVTSG GYLQAAWPAL GK+
Sbjct:   22 VQIDNLWNIPNILTMLRVVAIPIFAFVFYLPVPWRNKATAAIFAVASATDWLDGYLARKWKITSPFGAFLDPVADKLMVASALVLLAGSEGGWVVAVPAAIILAREITVSALREWMAGRGERSKVQVGMAGKVKTACQMVSLILLLLAQKGADCPLPVSLLHPAALALLYLSTVLTVTSGWGYLQAAWPALSGKE 216          
BLAST of jgi.p|Trimin1|353115 vs. uniprot
Match: A0A7S2UZN3_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UZN3_9STRA)

HSP 1 Score: 203 bits (516), Expect = 1.140e-60
Identity = 113/195 (57.95%), Postives = 136/195 (69.74%), Query Frame = 1
Query:  115 VNTPTLWNVPNILTLARLICVPILGFLFYAPIANRNIWCAALFAGAAITDWLDGWWARKFNIASPFGAFLDPVADKLIVAVAMILLSERLGEWMT-VCTSIILCREIAVSALREWMAQIGARGVVKVGMAGKCKTAAQMVALTTLLLLQPSAAPAILPPVAFDAGKWLMIFSAVLTVTSGTGYLQAAWPALMGKD 696
            V    LWN+PNILT+ R++ +PI  F+FY P+  RN   AA+FA A+ TDWLDG+ ARK+ I SPFGAFLDPVADKL+VA A++LL+   G W+  V  +IIL REI VSALREWMA  G R  V+VGMAGK KTA QMV+L  LLL Q  A   +   +   A   L+  S VLTVTSG GYLQAAWPAL GK+
Sbjct:  135 VQIDNLWNIPNILTMLRVVAIPIFAFVFYLPVPWRNKATAAIFAVASATDWLDGYLARKWKITSPFGAFLDPVADKLMVASALVLLAGSEGGWVVAVPAAIILAREITVSALREWMAGRGERSKVQVGMAGKVKTACQMVSLILLLLAQKGADCPLPVSLLHPAALALLYLSTVLTVTSGWGYLQAAWPALSGKE 329          
BLAST of jgi.p|Trimin1|353115 vs. uniprot
Match: A0A521V6W3_9GAMM (CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase n=2 Tax=Xanthomonadaceae TaxID=32033 RepID=A0A521V6W3_9GAMM)

HSP 1 Score: 179 bits (453), Expect = 6.990e-53
Identity = 99/191 (51.83%), Postives = 129/191 (67.54%), Query Frame = 1
Query:  136 NVPNILTLARLICVPILGFLFYAPIANRNIWCAALFAGAAITDWLDGWWARKFNIASPFGAFLDPVADKLIVAVAMILLSE-RLGEWMTVCTSIILCREIAVSALREWMAQIGARGVVKVGMAGKCKTAAQMVALTTLLL-LQPSAAPAILP---PVAFDAGKWLMIFSAVLTVTSGTGYLQAAWPALMGK 693
             +P ILTL R+  +P+L  +++ P    N   AA+FA A+ITDWLDGW AR+F + S FGAFLDPVADKL+V+ A+ L+ +     WM +  ++I+ REIAVSALREWMA++G RG V V   GK KT AQMVALT LL  + PS  P   P    + F  G WL+  +A+LT+ SG GYL+AAWP+L GK
Sbjct:    4 TLPTILTLIRIALIPVLAAVYFLPYGWTNFAAAAVFAFASITDWLDGWIARRFGMTSAFGAFLDPVADKLMVSTALFLIVQGHPTAWMALWAAVIVGREIAVSALREWMAEVGQRGKVAVAAIGKFKTVAQMVALTCLLYSVTPSQPPHPTPWMGNLIFHIGDWLLAIAALLTLWSGLGYLRAAWPSLQGK 194          
BLAST of jgi.p|Trimin1|353115 vs. uniprot
Match: A0A7Y5D988_LYSSP (CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase n=1 Tax=Lysobacter sp. TaxID=72226 RepID=A0A7Y5D988_LYSSP)

HSP 1 Score: 179 bits (454), Expect = 7.610e-53
Identity = 101/190 (53.16%), Postives = 129/190 (67.89%), Query Frame = 1
Query:  136 NVPNILTLARLICVPILGFLFYAPIANRNIWCAALFAGAAITDWLDGWWARKFNIASPFGAFLDPVADKLIVAVAMILLSE-RLGEWMTVCTSIILCREIAVSALREWMAQIGARGVVKVGMAGKCKTAAQMVALTTLLL-LQPSAAPAILP-PVAFDAGKWLMIFSAVLTVTSGTGYLQAAWPALMGKD 696
             VP +LTLAR++ +P+L  +FY P    N   AA+FA AA+TDWLDGW AR++++ S FGAFLDPVADKL+VAVA+ L+ +     WM    ++I+ REIAVSALREWMA+IG R  VKV + GK KT AQM AL  LL  + P   PA  P  V F  G W++  +A+LT+ SG  YL AAWPALM  +
Sbjct:    4 TVPTMLTLARIVMIPVLVLVFYLPYKWSNFASAAVFALAAVTDWLDGWIARRYDLHSAFGAFLDPVADKLMVAVALFLIVQGHPTPWMAFWAAVIVGREIAVSALREWMAEIGQRATVKVAVIGKIKTMAQMFALLCLLYSVVPGVKPAPWPGDVIFHTGDWMLAAAALLTLWSGAQYLIAAWPALMADE 193          
BLAST of jgi.p|Trimin1|353115 vs. uniprot
Match: UPI001389785E (CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase n=1 Tax=Pseudoxanthomonas taiwanensis TaxID=176598 RepID=UPI001389785E)

HSP 1 Score: 178 bits (452), Expect = 1.430e-52
Identity = 100/190 (52.63%), Postives = 125/190 (65.79%), Query Frame = 1
Query:  142 PNILTLARLICVPILGFLFYAPIANRNIWCAALFAGAAITDWLDGWWARKFNIASPFGAFLDPVADKLIVAVAMILLSE-RLGEWMTVCTSIILCREIAVSALREWMAQIGARGVVKVGMAGKCKTAAQMVALTTLLL-LQPSAAPA--ILPPVAFDAGKWLMIFSAVLTVTSGTGYLQAAWPALMGKDA 699
            P  LTLAR++ +P+L  +FY P    N   A +F  AA+TDWLDGWWAR++   S FGAFLDPVADK++VAVA+ L+ +     WM    ++I+ REIAVSALREWMA+IG R  VKV M GK KT AQMVAL  LL  + P+ AP    L    F  G WL+  +A+LT+ SG  YL AAWPAL   +A
Sbjct:    6 PTWLTLARIVMIPVLVLVFYLPYRWTNFAAAGVFILAAVTDWLDGWWARRYQQHSAFGAFLDPVADKMMVAVALFLIVQGHPTPWMAFWAAVIVGREIAVSALREWMAEIGQRATVKVAMIGKIKTTAQMVALACLLYSVSPNRAPTGIWLGEFVFHVGDWLLAIAALLTLWSGGQYLYAAWPALRADEA 195          
BLAST of jgi.p|Trimin1|353115 vs. uniprot
Match: A0A370DFG8_9GAMM (CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase n=6 Tax=Bacteria TaxID=2 RepID=A0A370DFG8_9GAMM)

HSP 1 Score: 176 bits (447), Expect = 4.970e-52
Identity = 96/189 (50.79%), Postives = 130/189 (68.78%), Query Frame = 1
Query:  130 LWNVPNILTLARLICVPILGFLFYAPIANRNIWCAALFAGAAITDWLDGWWARKFNIASPFGAFLDPVADKLIVAVAMILLSE-RLGEWMTVCTSIILCREIAVSALREWMAQIGARGVVKVGMAGKCKTAAQMVALTTLLLLQPSAAPAILPPVAFDAGKWLMIFSAVLTVTSGTGYLQAAWPALMGK 693
            +WN+PN+LTL R++ +P+   +FY P+    I CAA+FA AA+TDWLDG+ AR++   SPFGAFLDPVADKL+VAVA++LL +     W+ +  +II+ REI +SALREWMA +GAR  V V + GK KTAAQM+A+  L++ Q      I        G  L+  SA+LT+ S   YL+AAWP+LMGK
Sbjct:    1 MWNIPNLLTLLRIVLIPVFVLIFYLPVEWARIGCAAVFALAAVTDWLDGFLARRWGQVSPFGAFLDPVADKLMVAVALLLLVQSEPTPWLALPAAIIIGREITISALREWMAALGARAQVAVSVIGKFKTAAQMLAILLLIIQQDLWGLPI-----HTVGFVLLYISAILTLWSMVIYLRAAWPSLMGK 184          
BLAST of jgi.p|Trimin1|353115 vs. uniprot
Match: A0A5B2ZB81_9GAMM (CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase n=1 Tax=Arenimonas fontis TaxID=2608255 RepID=A0A5B2ZB81_9GAMM)

HSP 1 Score: 176 bits (445), Expect = 7.760e-52
Identity = 97/187 (51.87%), Postives = 126/187 (67.38%), Query Frame = 1
Query:  136 NVPNILTLARLICVPILGFLFYAPIANRNIWCAALFAGAAITDWLDGWWARKFNIASPFGAFLDPVADKLIVAVAMILLSERLGE-WMTVCTSIILCREIAVSALREWMAQIGARGVVKVGMAGKCKTAAQMVALTTLLLLQPSAAPAILPPVAFDAGKWLMIFSAVLTVTSGTGYLQAAWPALMGK 693
             +P +LTL R++ +P+L  +FY P A  NI  AA+F   A TDWLDGW AR+F + S FGAFLDPVADKL VA A++L+ ER    WM + ++II+ REI +SALREWMAQ+GA G+VKV   GK KT  QMVA+T LL  +      +L    F  G+WL+  +A LT+ SG  YL+AAWPA+  K
Sbjct:    4 TIPTLLTLFRILLIPVLVAVFYLPYAWTNIAAAAIFLLGASTDWLDGWIARRFRMFSAFGAFLDPVADKLTVAFALLLVVERHDTPWMALLSAIIIGREITISALREWMAQVGAHGLVKVAGLGKLKTIVQMVAITCLLFEED-----LLGLPVFRIGEWLLAVAATLTLWSGWDYLRAAWPAMRQK 185          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|353115 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A836CKB1_9STRA6.430e-75100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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BLAST of jgi.p|Trimin1|353115 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835ZDG0_9STRA1.230e-166100.00CDP-diacylglycerol--glycerol-3-phosphate 3-phospha... [more]
A0A6H5L2F5_9PHAE3.450e-8264.00Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
W7TJV8_9STRA2.890e-6255.56Cdp-diacylglycerol--glycerol-3-phosphate 3-phospha... [more]
A0A7S2V0D2_9STRA3.850e-6257.95Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A7S2UZN3_9STRA1.140e-6057.95Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A521V6W3_9GAMM6.990e-5351.83CDP-diacylglycerol--glycerol-3-phosphate 3-phospha... [more]
A0A7Y5D988_LYSSP7.610e-5353.16CDP-diacylglycerol--glycerol-3-phosphate 3-phospha... [more]
UPI001389785E1.430e-5252.63CDP-diacylglycerol--glycerol-3-phosphate 3-phospha... [more]
A0A370DFG8_9GAMM4.970e-5250.79CDP-diacylglycerol--glycerol-3-phosphate 3-phospha... [more]
A0A5B2ZB81_9GAMM7.760e-5251.87CDP-diacylglycerol--glycerol-3-phosphate 3-phospha... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_145contigContig_145:83888..85850 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|353115|estExt_Genemark1.C_Ctg_1450013
Hectar predicted targeting categorysignal peptide
TranscriptId353437
TrackFilteredModels1
ProteinId353115
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|353115gene_15196Tribonema minus UTEX_B_3156 geneContig_145 83888..85850 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_15196_3exon_15196_3Tribonema minus UTEX_B_3156 exonContig_145 83888..83989 -
exon_15196_2exon_15196_2Tribonema minus UTEX_B_3156 exonContig_145 85127..85241 -
exon_15196_1exon_15196_1Tribonema minus UTEX_B_3156 exonContig_145 85731..85850 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR3_15196UTR3_15196Tribonema minus UTEX_B_3156 three_prime_UTRContig_145 83888..83891 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_15196CDS_15196Tribonema minus UTEX_B_3156 CDSContig_145 85731..85850 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|353115Trimin1|353115|estExt_Genemark1.C_Ctg_1450013Tribonema minus UTEX_B_3156 polypeptideContig_145 83892..85850 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_15196 ID=mRNA_15196|Name=jgi.p|Trimin1|353115|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=337bp|location=Sequence derived from alignment at Contig_145:83888..85850- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGGGCATGATATTTCTGTCCATAGTTGGCGGACTGTTCTTGGTGCAGCC
CTTCTACACCTGCCCGGAACTGGCTGCGGATGATGGCACGGGGAATGCCG
CAAAATCCTGCTTCTGGGCGGTGGCGGTGTACGCTGGCGTGCTGGTTGCG
AGCGTCTTCGGGATGTACTGGGACGGCCGCGCCGGCGCCGGGAGGGGCAA
GCAGGGCGCATATATGAGCGCAGAACGTGGCATTGATCCCATGGAGGCTG
AGGGGCTGCTGAGCCGTGAGCCGGCAAGCCCCGACCACGCCGACTACCTC
GCCGGCTACGGCGCCGTGTCCGGCAGGAGATAGCGCG
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protein sequence of jgi.p|Trimin1|353115

>Trimin1|353115|estExt_Genemark1.C_Ctg_1450013 ID=Trimin1|353115|estExt_Genemark1.C_Ctg_1450013|Name=jgi.p|Trimin1|353115|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=111bp
MGMIFLSIVGGLFLVQPFYTCPELAADDGTGNAAKSCFWAVAVYAGVLVA
SVFGMYWDGRAGAGRGKQGAYMSAERGIDPMEAEGLLSREPASPDHADYL
AGYGAVSGRR*
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mRNA from alignment at Contig_145:83888..85850-

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_15196 ID=mRNA_15196|Name=jgi.p|Trimin1|353115|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1963bp|location=Sequence derived from alignment at Contig_145:83888..85850- (Tribonema minus UTEX_B_3156 )
ATGGGCATGATATTTCTGTCCATAGTTGGCGGACTGTTCTTGGTGCAGCC CTTCTACACCTGCCCGGAACTGGCTGCGGATGATGGCACGGGGAATGCCG CAAAATCCTGCTTCTGGGCGGTACGTGTCCCGAAACCATGAGTACAGCGC AGCATGCCTTTGTGCACCAGGCATTGAGCGAGCAAGGTCCATGCGGCACC CTCTGCACTTCACGAGCGCGGACATTGGCAGGGCCAAAGACTAGTGTAGT AGTGCTTGACATGCCAGCTTCAGTGGGAGGACCAGTACACAGGCACTTGT GGGTATGTAAGTATGTTCTTCATGCCAGTCACATGTGAATGGTGCCCGTC GCGCATCCATCATCTGCAGTTCCATGCAAACAGCTGCCGCTGAGCACGCC TCGTTCCGCGCACAGCAGTGCCCATGCTTGACCACGCGATGGATCCAAGG AGCTCCACTCGCAGTAGTGCTGCATGCTGCACCGCAGCCACAGGCGCACG CGCACACTGCGTATACGGACACATGGACTCAGGCATTGCAACTGTGATCA ACACCAGGCCATGCTTACTGACCTTTCTTGATGTGGCTGGTGTGTGTGTG GACTGTCAGGTGGCGGTGTACGCTGGCGTGCTGGTTGCGAGCGTCTTCGG GATGTACTGGGACGGCCGCGCCGGCGCCGGGAGGGGCAAGCAGGGCGCAT ATATGAGCGCAGAACGTGGCATTGGTAAGTTCAATCTTGAAACGGCCCAG CCAAACATGGCCCGGATGGTATCACCAGCTAACCAGCGCATTCATTTGTA TTGCTTCGAAGCACCGTGGGCTCTGTTAGCTCGGCAATGGCGCAGGAGCA GCCCTGCATGCCAGCCATGCGGCGTGTGTGCGCCACAGGGCGCCGTGGTT GGGGGATCGCTGGCGGTTGCTGTGGCTCCGCGTGTCGACTTTGGTGCGTC GCCGAACTGAATGACTCCTCAGCAAGAACAATGGCACCACCGTGGCACTT GGTACATAGCTTCAACCGCGTATTGAAATACCACAACACAGACCTGGGAA ACTATTGTACTGCGAGTATTGCAAAGCTTTCTTGAGTCTGTGCAACGCAT CGGTGACTCTCCACGTACTGAAATACCACAACACAGACCTGGAAACTAGT ATTCAACTGCCAGGATTGCAAGGCTTTCTAAGTCTGTGCAACGCATCTGG CTCTCTTACCATGAAGTGCCAATGCTTTCATTGTTGGTACGCAGCCCATA TATGTAAGTGTGTGCGTCGGAAAGGTTCAGCGAGCAAGTGCCTGTGGACT CCACGGTGAGCCCCAGCGGGCACAACAGCATACCACGTCGTACGCTTTCA GTCATTCCATCGACTCCCAATTACCAGTGTGGCATGCCGGTGCATGATTA CGGGCTGTTCTTCCATCGCCTGCTTGACATATGACCGCATGCTGCACAAG AGGGTGATGAGTCTCATGAACCGTACACGTCAGACAACACTGGGCTCTAA AGGGCGCATGCGCCGGCGTGTATGTGTACATGGCACGCATCTTCGACTTG AAGATACACATTGCACCTCTCTCGTCAAGCCGAAGTACGCGCGGCACAAG GCACGTGCAGCGAGGCGCGGCGGGCGCAGCGGTGCGTCGAGCACCGCTAA TGTAGTTGTTCTTGCGTTCACGCGTGCTGAAGCGAATGCGCGGCAGTGCG CCGAATCACTGCCACGGCTCCTCTCCGCTCACTCCCATACAGACTCAGAT GGAGCCCAACTACTCGCACTGTGTTGTCATCGGGTTCACGCAGGCCCCAG AGGCGCGCGGCCTTGGCACTCTCATCAGCGCCGCAATTGCTGCGTGCGTC TGTGCGCGCAGATCCCATGGAGGCTGAGGGGCTGCTGAGCCGTGAGCCGG CAAGCCCCGACCACGCCGACTACCTCGCCGGCTACGGCGCCGTGTCCGGC AGGAGATAGCGCG
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Coding sequence (CDS) from alignment at Contig_145:83888..85850-

>mRNA_15196 ID=mRNA_15196|Name=jgi.p|Trimin1|353115|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=333bp|location=Sequence derived from alignment at Contig_145:83888..85850- (Tribonema minus UTEX_B_3156 )
ATGGGCATGATATTTCTGTCCATAGTTGGCGGACTGTTCTTGGTGCAGCC
CTTCTACACCTGCCCGGAACTGGCTGCGGATGATGGCACGGGGAATGCCG
CAAAATCCTGCTTCTGGGCGGTGGCGGTGTACGCTGGCGTGCTGGTTGCG
AGCGTCTTCGGGATGTACTGGGACGGCCGCGCCGGCGCCGGGAGGGGCAA
GCAGGGCGCATATATGAGCGCAGAACGTGGCATTGATCCCATGGAGGCTG
AGGGGCTGCTGAGCCGTGAGCCGGCAAGCCCCGACCACGCCGACTACCTC
GCCGGCTACGGCGCCGTGTCCGGCAGGAGATAG
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