mRNA_15157 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|177399
Unique NamemRNA_15157
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|177399 vs. uniprot
Match: A0A835ZEL0_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZEL0_9STRA)

HSP 1 Score: 440 bits (1131), Expect = 2.760e-156
Identity = 215/215 (100.00%), Postives = 215/215 (100.00%), Query Frame = 1 
Query:    1 MFDVSAAVRACAPVYYFDHREIESPVNLQKFVMTKAEVPDNTVSAVFTPSADGDGGFIHYFLFFMRDAGMSVFGVNLGSHRYDIEQTIVQVNGQGKIVGLQFMPHNVKEHFWIKDTYDLAMIVRDGHPQVYVSLGKHGCYPVAGTVTRYLGFLSDVCDNPVRQTLEAVILSDAMVKLKYIGAGFQGIRSRLTVNKSVPTIRLSDVRLHNVLPVFR 645
            MFDVSAAVRACAPVYYFDHREIESPVNLQKFVMTKAEVPDNTVSAVFTPSADGDGGFIHYFLFFMRDAGMSVFGVNLGSHRYDIEQTIVQVNGQGKIVGLQFMPHNVKEHFWIKDTYDLAMIVRDGHPQVYVSLGKHGCYPVAGTVTRYLGFLSDVCDNPVRQTLEAVILSDAMVKLKYIGAGFQGIRSRLTVNKSVPTIRLSDVRLHNVLPVFR
Sbjct:    1 MFDVSAAVRACAPVYYFDHREIESPVNLQKFVMTKAEVPDNTVSAVFTPSADGDGGFIHYFLFFMRDAGMSVFGVNLGSHRYDIEQTIVQVNGQGKIVGLQFMPHNVKEHFWIKDTYDLAMIVRDGHPQVYVSLGKHGCYPVAGTVTRYLGFLSDVCDNPVRQTLEAVILSDAMVKLKYIGAGFQGIRSRLTVNKSVPTIRLSDVRLHNVLPVFR 215
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BLAST of jgi.p|Trimin1|177399 vs. uniprot
Match: A0A835Z2R5_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z2R5_9STRA)

HSP 1 Score: 303 bits (776), Expect = 1.600e-102
Identity = 141/193 (73.06%), Postives = 166/193 (86.01%), Query Frame = 1 
Query:   37 PVYYFDHREIESPVNLQKFVMTKAEVPDNTVSAVFTPSADGDGGFIHYFLFFMRDAGMSVFGVNLGSHRYDIEQTIVQVNGQGKIVGLQFMPHNVKEHFWIKDTYDLAMIVRDGHPQVYVSLGKHGCYPVAGTVTRYLGFLSDVCDNPVRQTLEAVILSDAMVKLKYIGAGFQGIRSRLTVNKSVPTIRLSDV 615
            PVY+FD++E ESPVNL +F+ TKA V D+TVSAVF P+ADG GGFIHYFLFFM+DAG SV G N+GSH YDIEQTIVQV+ +GKIV ++FMPHN KEHFWI+DT DLA IVRDGH QVYVS GKHGCYPVAGTVTRYLG +SDVCD PV+++  AV+L+DA+  +KYIG GF+GI+SRL VN SVPTIRLS+V
Sbjct:    1 PVYHFDYKETESPVNLTRFIQTKAAVADDTVSAVFRPAADGKGGFIHYFLFFMKDAGTSVLGFNMGSHEYDIEQTIVQVSSKGKIVAIEFMPHNTKEHFWIRDTKDLATIVRDGHAQVYVSRGKHGCYPVAGTVTRYLGAVSDVCDKPVKKSYAAVVLADAVANVKYIGTGFEGIKSRLVVNTSVPTIRLSEV 193
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BLAST of jgi.p|Trimin1|177399 vs. uniprot
Match: A0A836CG74_9STRA (Uncharacterized protein n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A836CG74_9STRA)

HSP 1 Score: 160 bits (405), Expect = 7.480e-46
Identity = 92/209 (44.02%), Postives = 123/209 (58.85%), Query Frame = 1 
Query:    7 DVSAAVRACAPVYYFDHREIESPVNLQKFVMTKAEVPDNTVSAV--FTPSADGDGGFIHYFLFFMRDAGMSVFGVN-LGSHRYDIEQTIVQVNGQGKIVGLQFMPHNVKEHFWIKDTYDLAMIVRDG-HPQVYVSLGKHGCYPVAGTVTRYLGFLSDVCDNPVRQTLEAVILSDAMVKLKYIGAGFQGIRSRLT-VNKSVPTIRLSDVR 618
            D +A +    PVYY    E E PVNL  ++ +     D TVS V    P+A   G  +HYFLFFMRD GMS+FG+N +G H YDIEQ ++++     +  + +MPH+  EHF + D  DL MI+ DG  P+VYVS GKH  YPV GTV RYLG  +D C  PVRQ     +L   +     IG  F+GI+ RL     +VPT+R++ +R
Sbjct:    5 DPNALLVKHTPVYYTACNEAEEPVNLTTYMRSALCEKDKTVSGVCQLLPTA---GALLHYFLFFMRDTGMSIFGINGVGGHDYDIEQVVIELGADANVKAVFYMPHSASEHFCVSDEADLNMILVDGVRPRVYVSHGKHAQYPVPGTVRRYLGLANDTCKLPVRQEFGVTVLDKDIRDSVSIGT-FEGIKKRLEPAVLNVPTVRINLLR 209
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|177399 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A835ZEL0_9STRA2.760e-156100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835Z2R5_9STRA1.600e-10273.06Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
A0A836CG74_9STRA7.480e-4644.02Uncharacterized protein n=2 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_151contigContig_151:86603..87250 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|177399|e_gw1.151.60.1
Hectar predicted targeting categoryother localisation
TranscriptId177721
TrackFilteredModels1
ProteinId177399
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|177399gene_15157Tribonema minus UTEX_B_3156 geneContig_151 86603..87250 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_15157_1exon_15157_1Tribonema minus UTEX_B_3156 exonContig_151 86603..87250 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_15157CDS_15157Tribonema minus UTEX_B_3156 CDSContig_151 86603..87250 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|177399Trimin1|177399|e_gw1.151.60.1Tribonema minus UTEX_B_3156 polypeptideContig_151 86603..87250 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_15157 ID=mRNA_15157|Name=jgi.p|Trimin1|177399|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=648bp|location=Sequence derived from alignment at Contig_151:86603..87250+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGTTCGACGTTTCTGCTGCAGTGCGAGCTTGCGCACCCGTTTACTACTT
CGATCACAGGGAAATAGAGTCGCCAGTCAACCTCCAAAAGTTCGTCATGA
CCAAAGCGGAGGTCCCGGACAACACCGTCAGCGCGGTCTTCACACCATCG
GCGGACGGCGACGGCGGCTTCATTCATTACTTCCTGTTCTTCATGAGGGA
CGCTGGGATGAGCGTCTTCGGCGTCAACCTGGGCTCGCATCGATATGACA
TCGAACAGACGATCGTGCAGGTGAACGGACAAGGTAAGATCGTGGGACTG
CAGTTCATGCCGCATAACGTCAAGGAACACTTTTGGATCAAGGACACGTA
CGACCTGGCCATGATCGTGAGAGATGGTCACCCGCAAGTGTACGTGTCTC
TCGGAAAGCACGGGTGTTACCCCGTGGCCGGCACCGTCACCAGGTACCTG
GGCTTCTTGAGCGACGTGTGCGACAACCCTGTCCGGCAAACATTGGAAGC
GGTGATTCTCTCAGACGCCATGGTGAAGTTAAAGTACATCGGCGCCGGGT
TTCAGGGCATCAGATCCAGGCTGACGGTGAACAAGTCTGTGCCGACCATC
CGGTTGTCCGACGTGAGACTTCACAACGTGCTCCCCGTATTCAGGTAG
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protein sequence of jgi.p|Trimin1|177399

>Trimin1|177399|e_gw1.151.60.1 ID=Trimin1|177399|e_gw1.151.60.1|Name=jgi.p|Trimin1|177399|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=216bp
MFDVSAAVRACAPVYYFDHREIESPVNLQKFVMTKAEVPDNTVSAVFTPS
ADGDGGFIHYFLFFMRDAGMSVFGVNLGSHRYDIEQTIVQVNGQGKIVGL
QFMPHNVKEHFWIKDTYDLAMIVRDGHPQVYVSLGKHGCYPVAGTVTRYL
GFLSDVCDNPVRQTLEAVILSDAMVKLKYIGAGFQGIRSRLTVNKSVPTI
RLSDVRLHNVLPVFR*
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mRNA from alignment at Contig_151:86603..87250+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_15157 ID=mRNA_15157|Name=jgi.p|Trimin1|177399|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=648bp|location=Sequence derived from alignment at Contig_151:86603..87250+ (Tribonema minus UTEX_B_3156 )
ATGTTCGACGTTTCTGCTGCAGTGCGAGCTTGCGCACCCGTTTACTACTT
CGATCACAGGGAAATAGAGTCGCCAGTCAACCTCCAAAAGTTCGTCATGA
CCAAAGCGGAGGTCCCGGACAACACCGTCAGCGCGGTCTTCACACCATCG
GCGGACGGCGACGGCGGCTTCATTCATTACTTCCTGTTCTTCATGAGGGA
CGCTGGGATGAGCGTCTTCGGCGTCAACCTGGGCTCGCATCGATATGACA
TCGAACAGACGATCGTGCAGGTGAACGGACAAGGTAAGATCGTGGGACTG
CAGTTCATGCCGCATAACGTCAAGGAACACTTTTGGATCAAGGACACGTA
CGACCTGGCCATGATCGTGAGAGATGGTCACCCGCAAGTGTACGTGTCTC
TCGGAAAGCACGGGTGTTACCCCGTGGCCGGCACCGTCACCAGGTACCTG
GGCTTCTTGAGCGACGTGTGCGACAACCCTGTCCGGCAAACATTGGAAGC
GGTGATTCTCTCAGACGCCATGGTGAAGTTAAAGTACATCGGCGCCGGGT
TTCAGGGCATCAGATCCAGGCTGACGGTGAACAAGTCTGTGCCGACCATC
CGGTTGTCCGACGTGAGACTTCACAACGTGCTCCCCGTATTCAGGTAG
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Coding sequence (CDS) from alignment at Contig_151:86603..87250+

>mRNA_15157 ID=mRNA_15157|Name=jgi.p|Trimin1|177399|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=648bp|location=Sequence derived from alignment at Contig_151:86603..87250+ (Tribonema minus UTEX_B_3156 )
ATGTTCGACGTTTCTGCTGCAGTGCGAGCTTGCGCACCCGTTTACTACTT
CGATCACAGGGAAATAGAGTCGCCAGTCAACCTCCAAAAGTTCGTCATGA
CCAAAGCGGAGGTCCCGGACAACACCGTCAGCGCGGTCTTCACACCATCG
GCGGACGGCGACGGCGGCTTCATTCATTACTTCCTGTTCTTCATGAGGGA
CGCTGGGATGAGCGTCTTCGGCGTCAACCTGGGCTCGCATCGATATGACA
TCGAACAGACGATCGTGCAGGTGAACGGACAAGGTAAGATCGTGGGACTG
CAGTTCATGCCGCATAACGTCAAGGAACACTTTTGGATCAAGGACACGTA
CGACCTGGCCATGATCGTGAGAGATGGTCACCCGCAAGTGTACGTGTCTC
TCGGAAAGCACGGGTGTTACCCCGTGGCCGGCACCGTCACCAGGTACCTG
GGCTTCTTGAGCGACGTGTGCGACAACCCTGTCCGGCAAACATTGGAAGC
GGTGATTCTCTCAGACGCCATGGTGAAGTTAAAGTACATCGGCGCCGGGT
TTCAGGGCATCAGATCCAGGCTGACGGTGAACAAGTCTGTGCCGACCATC
CGGTTGTCCGACGTGAGACTTCACAACGTGCTCCCCGTATTCAGGTAG
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