mRNA_15143 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|132961
Unique NamemRNA_15143
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|132961 vs. uniprot
Match: A0A835ZCR8_9STRA (GIY-YIG domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZCR8_9STRA)

HSP 1 Score: 156 bits (395), Expect = 9.620e-49
Identity = 70/70 (100.00%), Postives = 70/70 (100.00%), Query Frame = 1 
Query:    1 CCYVIVNEQGRTYVGYTVNPKRRLRQHNGCLKGGARNTAGKGPWRYVIVLTSEAFDNRKALSAEWHLKHP 210
            CCYVIVNEQGRTYVGYTVNPKRRLRQHNGCLKGGARNTAGKGPWRYVIVLTSEAFDNRKALSAEWHLKHP
Sbjct:    1 CCYVIVNEQGRTYVGYTVNPKRRLRQHNGCLKGGARNTAGKGPWRYVIVLTSEAFDNRKALSAEWHLKHP 70
[Close]
BLAST of jgi.p|Trimin1|132961 vs. uniprot
Match: A0A836CIF4_9STRA (GIY-YIG domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CIF4_9STRA)

HSP 1 Score: 123 bits (309), Expect = 1.470e-34
Identity = 54/69 (78.26%), Postives = 59/69 (85.51%), Query Frame = 1 
Query:    4 CYVIVNEQGRTYVGYTVNPKRRLRQHNGCLKGGARNTAGKGPWRYVIVLTSEAFDNRKALSAEWHLKHP 210
            CY IVNEQGRTYVGYTV PKRRLRQHNG + GGAR+TAGKGPWR+  VLTSE+FD+ K LS EWHLK P
Sbjct:    5 CYTIVNEQGRTYVGYTVLPKRRLRQHNGVITGGARSTAGKGPWRFAFVLTSESFDSHKGLSCEWHLKRP 73
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BLAST of jgi.p|Trimin1|132961 vs. uniprot
Match: A0A836CJ24_9STRA (GIY-YIG domain-containing protein (Fragment) n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJ24_9STRA)

HSP 1 Score: 97.1 bits (240), Expect = 4.730e-25
Identity = 40/69 (57.97%), Postives = 50/69 (72.46%), Query Frame = 1 
Query:    4 CYVIVNEQGRTYVGYTVNPKRRLRQHNGCLKGGARNTAGKGPWRYVIVLTSEAFDNRKALSAEWHLKHP 210
            CY + NE GRTYVGYTV P RR+RQHN  +KGGA+ T G+GPWR++ V+    +    ALS EWH+KHP
Sbjct:    5 CYALCNESGRTYVGYTVCPARRIRQHNSDIKGGAKATRGRGPWRFIYVVDCIDYSASDALSLEWHIKHP 73
[Close]
BLAST of jgi.p|Trimin1|132961 vs. uniprot
Match: A0A836CN45_9STRA (GIY-YIG domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CN45_9STRA)

HSP 1 Score: 98.6 bits (244), Expect = 1.790e-24
Identity = 40/69 (57.97%), Postives = 51/69 (73.91%), Query Frame = 1 
Query:    4 CYVIVNEQGRTYVGYTVNPKRRLRQHNGCLKGGARNTAGKGPWRYVIVLTSEAFDNRKALSAEWHLKHP 210
            CY + N+ GRTY+GYTV P RRLRQHN  +KGGA+ T G+GPWR++ V+    F   +ALS EWH+KHP
Sbjct:    5 CYALCNDSGRTYIGYTVCPSRRLRQHNSSIKGGAKATRGRGPWRFIYVVEYINFTASEALSLEWHIKHP 73
[Close]
BLAST of jgi.p|Trimin1|132961 vs. uniprot
Match: A0A6C0CV58_9ZZZZ (GIY-YIG domain-containing protein n=1 Tax=viral metagenome TaxID=1070528 RepID=A0A6C0CV58_9ZZZZ)

HSP 1 Score: 87.8 bits (216), Expect = 1.420e-20
Identity = 39/70 (55.71%), Postives = 51/70 (72.86%), Query Frame = 1 
Query:    4 CYVIVNEQGRTYVGYTVNPKRRLRQHNGCLKGGARNTAGKGPWRYVIVLTSEAFDNRK-ALSAEWHLKHP 210
            CYVI N   RTY GYTVN  RRL+QHNG ++GGA+ T G+GPW +V++LTSE +D    A+  EW +K+P
Sbjct:    5 CYVIGNANDRTYNGYTVNLTRRLKQHNGVIQGGAKATRGRGPWEFVLILTSECWDCISVAMQHEWSIKYP 74
[Close]
BLAST of jgi.p|Trimin1|132961 vs. uniprot
Match: A0A6C0BQA1_9ZZZZ (GIY-YIG domain-containing protein n=1 Tax=viral metagenome TaxID=1070528 RepID=A0A6C0BQA1_9ZZZZ)

HSP 1 Score: 87.0 bits (214), Expect = 2.850e-20
Identity = 37/70 (52.86%), Postives = 51/70 (72.86%), Query Frame = 1 
Query:    4 CYVIVNEQGRTYVGYTVNPKRRLRQHNGCLKGGARNTAGKGPWRYVIVLTSEAFDN-RKALSAEWHLKHP 210
            CY+I NE  RTY GYT+N +RRL+QHNG LKGGA++T  +GPW ++ V+TS  +D    A+  EW +K+P
Sbjct:    5 CYIIYNENDRTYNGYTINLQRRLKQHNGILKGGAKSTHNRGPWSFLCVITSSCWDCISTAMQHEWSIKYP 74
[Close]
BLAST of jgi.p|Trimin1|132961 vs. uniprot
Match: A0A7L9AY03_POV01 (GIY-YIG domain-containing protein n=1 Tax=Pyramimonas orientalis virus TaxID=455367 RepID=A0A7L9AY03_POV01)

HSP 1 Score: 84.0 bits (206), Expect = 4.500e-19
Identity = 36/70 (51.43%), Postives = 51/70 (72.86%), Query Frame = 1 
Query:    4 CYVIVNEQGRTYVGYTVNPKRRLRQHNGCLKGGARNTAGKGPWRYVIVLTSEAFDN-RKALSAEWHLKHP 210
            CY+I NEQ RTY GYTV+  +RLRQHN  +KGGAR T+ +GPW +++V+TS  + +   A+  EW +K+P
Sbjct:    6 CYIINNEQDRTYNGYTVDLTKRLRQHNNYIKGGARATSNRGPWSFLVVITSPCWQSISTAMQHEWSIKYP 75
[Close]
BLAST of jgi.p|Trimin1|132961 vs. uniprot
Match: A0A183MZ08_9TREM (GIY-YIG domain-containing protein n=4 Tax=Schistosoma TaxID=6181 RepID=A0A183MZ08_9TREM)

HSP 1 Score: 80.9 bits (198), Expect = 3.050e-17
Identity = 39/75 (52.00%), Postives = 55/75 (73.33%), Query Frame = 1 
Query:    4 CYVIVNE----QGRTYVGYTVNPKRRLRQHN-GCLKGGARNTAGKGPWRYVIVLTSEAFDNR-KALSAEWHLKHP 210
            CY++++     +G+TY+G+TVNPKRR+RQHN GCLKGGA++TAGKGPW  V+++    F N   AL  EW  ++P
Sbjct:   24 CYILLSLNPKFRGKTYIGFTVNPKRRIRQHNAGCLKGGAKSTAGKGPWEMVLIVYG--FPNAISALRFEWAWQNP 96
[Close]
BLAST of jgi.p|Trimin1|132961 vs. uniprot
Match: A0A183WBL5_TRIRE (GIY-YIG domain-containing protein n=1 Tax=Trichobilharzia regenti TaxID=157069 RepID=A0A183WBL5_TRIRE)

HSP 1 Score: 80.5 bits (197), Expect = 6.420e-17
Identity = 38/75 (50.67%), Postives = 55/75 (73.33%), Query Frame = 1 
Query:    4 CYVIVNE----QGRTYVGYTVNPKRRLRQHN-GCLKGGARNTAGKGPWRYVIVLTSEAFDNR-KALSAEWHLKHP 210
            CY++++     +G+TY+G+TVNPKRR+RQHN GCLKGGA++T+GKGPW  V+++    F N   AL  EW  ++P
Sbjct:   26 CYILLSLNPKFRGKTYIGFTVNPKRRIRQHNSGCLKGGAKSTSGKGPWEMVLIV--HGFPNAISALRFEWAWQNP 98
[Close]
BLAST of jgi.p|Trimin1|132961 vs. uniprot
Match: A0A4Z2CLT5_SCHJA (Structure-specific endonuclease subunit SLX1 homolog n=4 Tax=Schistosoma japonicum TaxID=6182 RepID=A0A4Z2CLT5_SCHJA)

HSP 1 Score: 80.5 bits (197), Expect = 1.500e-16
Identity = 40/75 (53.33%), Postives = 54/75 (72.00%), Query Frame = 1 
Query:    4 CYVIV----NEQGRTYVGYTVNPKRRLRQHN-GCLKGGARNTAGKGPWRYVIVLTSEAFDNR-KALSAEWHLKHP 210
            CY+++    N +GRTY+G+TVNPKRR+RQHN G LKGGA++TAGKGPW  V+++    F N   AL  EW  ++P
Sbjct:   32 CYILLSLNPNFRGRTYIGFTVNPKRRIRQHNAGFLKGGAKSTAGKGPWEMVLIV--HGFPNAISALRFEWAWQNP 104
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|132961 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835ZCR8_9STRA9.620e-49100.00GIY-YIG domain-containing protein (Fragment) n=1 T... [more]
A0A836CIF4_9STRA1.470e-3478.26GIY-YIG domain-containing protein n=1 Tax=Tribonem... [more]
A0A836CJ24_9STRA4.730e-2557.97GIY-YIG domain-containing protein (Fragment) n=2 T... [more]
A0A836CN45_9STRA1.790e-2457.97GIY-YIG domain-containing protein n=1 Tax=Tribonem... [more]
A0A6C0CV58_9ZZZZ1.420e-2055.71GIY-YIG domain-containing protein n=1 Tax=viral me... [more]
A0A6C0BQA1_9ZZZZ2.850e-2052.86GIY-YIG domain-containing protein n=1 Tax=viral me... [more]
A0A7L9AY03_POV014.500e-1951.43GIY-YIG domain-containing protein n=1 Tax=Pyramimo... [more]
A0A183MZ08_9TREM3.050e-1752.00GIY-YIG domain-containing protein n=4 Tax=Schistos... [more]
A0A183WBL5_TRIRE6.420e-1750.67GIY-YIG domain-containing protein n=1 Tax=Trichobi... [more]
A0A4Z2CLT5_SCHJA1.500e-1653.33Structure-specific endonuclease subunit SLX1 homol... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_151contigContig_151:56385..56594 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|132961|gw1.151.11.1
BRITEko00000,ko00001,ko01000,ko03041,ko03400
KEGG Pathwayko03460,ko04212,map03460,map04212
KEGG koko:K13113,ko:K15078
GOsGO:0000003,GO:0000228,GO:0000280,GO:0000706,GO:0000712,GO:0000723,GO:0000724,GO:0000725,GO:0000726,GO:0000729,GO:0001325,GO:0002164,GO:0003674,GO:0003824,GO:0004518,GO:0004519,GO:0004520,GO:0004536,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005694,GO:0006139,GO:0006259,GO:0006281,GO:0006302,GO:0006310,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0007049,GO:0007059,GO:0007127,GO:0007131,GO:0007275,GO:0008150,GO:0008152,GO:0008821,GO:0009791,GO:0009892,GO:0009893,GO:0009987,GO:0010604,GO:0010605,GO:0010638,GO:0010639,GO:0010792,GO:0010833,GO:0016043,GO:0016787,GO:0016788,GO:0016888,GO:0016889,GO:0016893,GO:0016894,GO:0017108,GO:0019219,GO:0019222,GO:0019899,GO:0022402,GO:0022414,GO:0022607,GO:0031323,GO:0031324,GO:0031325,GO:0031974,GO:0031981,GO:0032200,GO:0032204,GO:0032205,GO:0032206,GO:0032501,GO:0032502,GO:0032991,GO:0033043,GO:0033044,GO:0033554,GO:0033557,GO:0034641,GO:0035825,GO:0036297,GO:0040019,GO:0042592,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044085,GO:0044087,GO:0044089,GO:0044237,GO:0044238,GO:0044260,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044454,GO:0044464,GO:0045002,GO:0045132,GO:0045934,GO:0045935,GO:0045995,GO:0046483,GO:0048256,GO:0048285,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048580,GO:0048581,GO:0048856,GO:0050789,GO:0050793,GO:0050794,GO:0050896,GO:0051052,GO:0051053,GO:0051054,GO:0051093,GO:0051094,GO:0051128,GO:0051129,GO:0051130,GO:0051171,GO:0051172,GO:0051173,GO:0051239,GO:0051240,GO:0051241,GO:0051276,GO:0051304,GO:0051307,GO:0051321,GO:0051716,GO:0060249,GO:0060255,GO:0061062,GO:0061064,GO:0061820,GO:0061982,GO:0065007,GO:0065008,GO:0070013,GO:0071704,GO:0071840,GO:0080090,GO:0090304,GO:0090305,GO:0090656,GO:0090657,GO:0090737,GO:0098813,GO:0140013,GO:0140097,GO:1901360,GO:1903046,GO:1904356,GO:1904357,GO:1904429,GO:1904431,GO:2000026,GO:2001251,GO:2001252
Preferred nameSLX1A
Description5'-flap endonuclease activity
COG categoryL
Max annot lvl33208|Metazoa
EggNOG OGsKOG3005@1|root,KOG3005@2759|Eukaryota,39TYN@33154|Opisthokonta,3BGAD@33208|Metazoa,3CZR0@33213|Bilateria
Evalue4.97e-18
Seed ortholog6183.Smp_106040.1
Hectar predicted targeting categoryother localisation
TranscriptId133283
TrackFilteredModels1
ProteinId132961
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|132961gene_15143Tribonema minus UTEX_B_3156 geneContig_151 56385..56594 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_15143_1exon_15143_1Tribonema minus UTEX_B_3156 exonContig_151 56385..56594 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_15143CDS_15143Tribonema minus UTEX_B_3156 CDSContig_151 56385..56594 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|132961Trimin1|132961|gw1.151.11.1Tribonema minus UTEX_B_3156 polypeptideContig_151 56385..56594 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_15143 ID=mRNA_15143|Name=jgi.p|Trimin1|132961|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=210bp|location=Sequence derived from alignment at Contig_151:56385..56594- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
TGTTGCTACGTGATTGTAAACGAGCAGGGACGCACGTACGTCGGTTACAC
TGTGAATCCAAAGCGACGTTTGAGGCAACACAATGGTTGCTTGAAAGGCG
GTGCAAGGAACACGGCAGGCAAAGGGCCGTGGCGATATGTGATTGTGTTG
ACATCCGAAGCATTTGATAACCGCAAAGCGTTGAGCGCAGAATGGCATTT
AAAGCATCCG
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protein sequence of jgi.p|Trimin1|132961

>Trimin1|132961|gw1.151.11.1 ID=Trimin1|132961|gw1.151.11.1|Name=jgi.p|Trimin1|132961|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=70bp
CCYVIVNEQGRTYVGYTVNPKRRLRQHNGCLKGGARNTAGKGPWRYVIVL
TSEAFDNRKALSAEWHLKHP
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mRNA from alignment at Contig_151:56385..56594-

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_15143 ID=mRNA_15143|Name=jgi.p|Trimin1|132961|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=210bp|location=Sequence derived from alignment at Contig_151:56385..56594- (Tribonema minus UTEX_B_3156 )
TGTTGCTACGTGATTGTAAACGAGCAGGGACGCACGTACGTCGGTTACAC
TGTGAATCCAAAGCGACGTTTGAGGCAACACAATGGTTGCTTGAAAGGCG
GTGCAAGGAACACGGCAGGCAAAGGGCCGTGGCGATATGTGATTGTGTTG
ACATCCGAAGCATTTGATAACCGCAAAGCGTTGAGCGCAGAATGGCATTT
AAAGCATCCG
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Coding sequence (CDS) from alignment at Contig_151:56385..56594-

>mRNA_15143 ID=mRNA_15143|Name=jgi.p|Trimin1|132961|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=210bp|location=Sequence derived from alignment at Contig_151:56385..56594- (Tribonema minus UTEX_B_3156 )
TGTTGCTACGTGATTGTAAACGAGCAGGGACGCACGTACGTCGGTTACAC
TGTGAATCCAAAGCGACGTTTGAGGCAACACAATGGTTGCTTGAAAGGCG
GTGCAAGGAACACGGCAGGCAAAGGGCCGTGGCGATATGTGATTGTGTTG
ACATCCGAAGCATTTGATAACCGCAAAGCGTTGAGCGCAGAATGGCATTT
AAAGCATCCG
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