mRNA_15123 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|173487
Unique NamemRNA_15123
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|173487 vs. uniprot
Match: A0A835ZER3_9STRA (Ubiquitin-like protein ATG12 (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZER3_9STRA)

HSP 1 Score: 183 bits (465), Expect = 6.510e-59
Identity = 86/86 (100.00%), Postives = 86/86 (100.00%), Query Frame = 1 
Query:    1 VRIHFMPISNAPILRQTKFRVPGSWTFQDLQASLRTQLKLPSSTPLFVYCNSAFCPSPDQILIELFLCFGTGGELVINYSLSEAWG 258
            VRIHFMPISNAPILRQTKFRVPGSWTFQDLQASLRTQLKLPSSTPLFVYCNSAFCPSPDQILIELFLCFGTGGELVINYSLSEAWG
Sbjct:    1 VRIHFMPISNAPILRQTKFRVPGSWTFQDLQASLRTQLKLPSSTPLFVYCNSAFCPSPDQILIELFLCFGTGGELVINYSLSEAWG 86
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BLAST of jgi.p|Trimin1|173487 vs. uniprot
Match: D7G0N6_ECTSI (Ubiquitin-like protein ATG12 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0N6_ECTSI)

HSP 1 Score: 114 bits (285), Expect = 1.010e-29
Identity = 48/85 (56.47%), Postives = 68/85 (80.00%), Query Frame = 1 
Query:    1 VRIHFMPISNAPILRQTKFRVPGSWTFQDLQASLRTQLKLPSSTPLFVYCNSAFCPSPDQILIELFLCFGTGGELVINYSLSEAW 255
            V++HF PI+NAPILR++KF+V  +W   +L+ASLR+ L++  +TPLF+YCNSAF PSPDQ L +L+ CF    EL++NYS++EAW
Sbjct:  146 VKVHFKPIANAPILRKSKFQVNSAWNCSELEASLRSMLQISDTTPLFLYCNSAFEPSPDQSLSDLYKCFNVNKELLMNYSITEAW 230
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BLAST of jgi.p|Trimin1|173487 vs. uniprot
Match: A0A7S2CZJ6_9STRA (Ubiquitin-like protein ATG12 n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2CZJ6_9STRA)

HSP 1 Score: 105 bits (263), Expect = 1.360e-27
Identity = 46/86 (53.49%), Postives = 60/86 (69.77%), Query Frame = 1 
Query:    1 VRIHFMPISNAPILRQTKFRVPGSWTFQDLQASLRTQLKLPSSTPLFVYCNSAFCPSPDQILIELFLCFGTGGELVINYSLSEAWG 258
            VR+HF  + +API+R+ KF++     F  +   LR QL+L  +TPLFVYCNSAFCPSPDQ L +L+ CF    ELV+NY + EAWG
Sbjct:   42 VRVHFQAVGSAPIMRKNKFQIGAHERFATIPKFLRKQLRLDENTPLFVYCNSAFCPSPDQRLQDLYQCFQRSNELVLNYCVQEAWG 127
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BLAST of jgi.p|Trimin1|173487 vs. uniprot
Match: F0WHJ6_9STRA (Ubiquitin-like protein ATG12 n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0WHJ6_9STRA)

HSP 1 Score: 94.4 bits (233), Expect = 1.850e-23
Identity = 43/86 (50.00%), Postives = 57/86 (66.28%), Query Frame = 1 
Query:    1 VRIHFMPISNAPILRQTKFRVPGSWTFQDLQASLRTQLKLPSSTPLFVYCNSAFCPSPDQILIELFLCFGTGGELVINYSLSEAWG 258
            V +HF+ + NAPIL++TKF +  + T   +   LR QLKL  S  LF+YCN AF P+PDQ L++L  CF     LV+NYSL+ AWG
Sbjct:    7 VTLHFVAVGNAPILQKTKFTIDANDTLSVVYDFLRKQLKLKLSDALFIYCNRAFAPAPDQSLLDLQKCFSVDNVLVLNYSLTHAWG 92
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BLAST of jgi.p|Trimin1|173487 vs. uniprot
Match: M4BM24_HYAAE (Ubiquitin-like protein ATG12 n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4BM24_HYAAE)

HSP 1 Score: 94.0 bits (232), Expect = 4.210e-23
Identity = 43/86 (50.00%), Postives = 57/86 (66.28%), Query Frame = 1 
Query:    1 VRIHFMPISNAPILRQTKFRVPGSWTFQDLQASLRTQLKLPSSTPLFVYCNSAFCPSPDQILIELFLCFGTGGELVINYSLSEAWG 258
            V + F+ + NAP++++TKF V G      +   LR QL+L  +  LFVYCNS+F PSPDQ L  LF CF  G  LV+NYSL++AWG
Sbjct:   24 VTLQFVAVGNAPLMKRTKFTVSGHDQLSVVYRFLRKQLRLKDTESLFVYCNSSFAPSPDQRLSSLFQCFQVGDVLVLNYSLTQAWG 109
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BLAST of jgi.p|Trimin1|173487 vs. uniprot
Match: A0A1X2IHN3_9FUNG (Ubiquitin-like protein ATG12 n=1 Tax=Absidia repens TaxID=90262 RepID=A0A1X2IHN3_9FUNG)

HSP 1 Score: 94.4 bits (233), Expect = 7.310e-23
Identity = 42/86 (48.84%), Postives = 58/86 (67.44%), Query Frame = 1 
Query:    1 VRIHFMPISNAPILRQTKFRVPGSWTFQDLQASLRTQLKLPSSTPLFVYCNSAFCPSPDQILIELFLCFGTGGELVINYSLSEAWG 258
            V + F  I NAPIL+Q+ +++  S  FQ +   LR +L+   S PLF+Y NSAF P+PD+I+  L+ CFGTGG L+INY  + AWG
Sbjct:   57 VIVRFAAIGNAPILKQSYYKITASNKFQTVIQFLRKELRYQGSDPLFLYINSAFSPAPDEIVSNLYKCFGTGGHLIINYCTTAAWG 142
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BLAST of jgi.p|Trimin1|173487 vs. uniprot
Match: A0A8K1FIP1_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FIP1_PYTOL)

HSP 1 Score: 93.2 bits (230), Expect = 8.020e-23
Identity = 43/86 (50.00%), Postives = 58/86 (67.44%), Query Frame = 1 
Query:    1 VRIHFMPISNAPILRQTKFRVPGSWTFQDLQASLRTQLKLPSSTPLFVYCNSAFCPSPDQILIELFLCFGTGGELVINYSLSEAWG 258
            V + F+ + NAP++++TKF V GS     +   L+ QL+L  +  LFVYCNS+F PSPDQ L  LF CF  G  LV+NYSL++AWG
Sbjct:   22 VMLQFVAVGNAPLMKRTKFTVNGSDALSVVYKFLKKQLRLKDTDALFVYCNSSFAPSPDQKLSYLFECFQVGEVLVLNYSLTQAWG 107
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BLAST of jgi.p|Trimin1|173487 vs. uniprot
Match: K3X0L1_GLOUD (Ubiquitin-like protein ATG12 n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3X0L1_GLOUD)

HSP 1 Score: 90.9 bits (224), Expect = 5.700e-22
Identity = 41/86 (47.67%), Postives = 57/86 (66.28%), Query Frame = 1 
Query:    1 VRIHFMPISNAPILRQTKFRVPGSWTFQDLQASLRTQLKLPSSTPLFVYCNSAFCPSPDQILIELFLCFGTGGELVINYSLSEAWG 258
            V + F+ + NAP++++TKF V G      +   L+ QL+L  +  LFVYCNS+F PSPDQ L  LF CF  G  L++NYSL++AWG
Sbjct:   17 VTLQFVAVGNAPLMKRTKFTVNGHDQLSVVYKFLKKQLRLKDTDALFVYCNSSFAPSPDQKLNSLFECFQVGEMLILNYSLTQAWG 102
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BLAST of jgi.p|Trimin1|173487 vs. uniprot
Match: A0A485KW31_9STRA (Ubiquitin-like protein ATG12 n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KW31_9STRA)

HSP 1 Score: 90.9 bits (224), Expect = 8.150e-22
Identity = 42/86 (48.84%), Postives = 55/86 (63.95%), Query Frame = 1 
Query:    1 VRIHFMPISNAPILRQTKFRVPGSWTFQDLQASLRTQLKLPSSTPLFVYCNSAFCPSPDQILIELFLCFGTGGELVINYSLSEAWG 258
            V I FM +  API++++KF V G+     +   LR QL+L     LFVYCN+AF P+PDQ + ELF CF   G LV+NYS + AWG
Sbjct:   30 VTIQFMAVGGAPIMKRSKFTVNGADPLSHVYIFLRKQLRLKDEDSLFVYCNNAFAPTPDQRMSELFECFQINGALVLNYSRTHAWG 115
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BLAST of jgi.p|Trimin1|173487 vs. uniprot
Match: B8C4Q5_THAPS (Ubiquitin-like protein ATG12 (Fragment) n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8C4Q5_THAPS)

HSP 1 Score: 89.7 bits (221), Expect = 1.200e-21
Identity = 41/86 (47.67%), Postives = 60/86 (69.77%), Query Frame = 1 
Query:    1 VRIHFMPISNAPILRQTKFRVPGSWTFQDLQASLRTQLKLPSSTPLFVYCNSAFCPSPDQILIELFLCFGTGGELVINYSLSEAWG 258
            V++HF+ + +APIL+++KF +     F    A LR  L+L S+  LF+Y N+AF PSPD+ + +L+ CFG  GELV++YSL EAWG
Sbjct:    6 VKVHFVAVGSAPILKKSKFLIGEEDEFGVATAFLRRLLRLDSAPSLFLYINAAFVPSPDERIGDLYDCFGVRGELVVHYSLQEAWG 91
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|173487 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835ZER3_9STRA6.510e-59100.00Ubiquitin-like protein ATG12 (Fragment) n=1 Tax=Tr... [more]
D7G0N6_ECTSI1.010e-2956.47Ubiquitin-like protein ATG12 n=1 Tax=Ectocarpus si... [more]
A0A7S2CZJ6_9STRA1.360e-2753.49Ubiquitin-like protein ATG12 n=1 Tax=Dictyocha spe... [more]
F0WHJ6_9STRA1.850e-2350.00Ubiquitin-like protein ATG12 n=1 Tax=Albugo laibac... [more]
M4BM24_HYAAE4.210e-2350.00Ubiquitin-like protein ATG12 n=1 Tax=Hyaloperonosp... [more]
A0A1X2IHN3_9FUNG7.310e-2348.84Ubiquitin-like protein ATG12 n=1 Tax=Absidia repen... [more]
A0A8K1FIP1_PYTOL8.020e-2350.00Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
K3X0L1_GLOUD5.700e-2247.67Ubiquitin-like protein ATG12 n=1 Tax=Globisporangi... [more]
A0A485KW31_9STRA8.150e-2248.84Ubiquitin-like protein ATG12 n=1 Tax=Aphanomyces s... [more]
B8C4Q5_THAPS1.200e-2147.67Ubiquitin-like protein ATG12 (Fragment) n=1 Tax=Th... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_103contigContig_103:403218..403947 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|173487|e_gw1.103.21.1
BRITEko00000,ko00001,ko03029,ko04121,ko04131
KEGG Pathwayko04068,ko04136,ko04138,ko04140,ko04621,ko04622,map04068,map04136,map04138,map04140,map04621,map04622
KEGG koko:K08336
GOsGO:0000045,GO:0000272,GO:0000407,GO:0000422,GO:0002165,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005773,GO:0005776,GO:0005829,GO:0005975,GO:0005976,GO:0005977,GO:0005980,GO:0006073,GO:0006091,GO:0006112,GO:0006464,GO:0006497,GO:0006501,GO:0006807,GO:0006914,GO:0006950,GO:0006996,GO:0007005,GO:0007033,GO:0007154,GO:0007275,GO:0007552,GO:0007568,GO:0008047,GO:0008104,GO:0008150,GO:0008152,GO:0008219,GO:0008340,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009251,GO:0009267,GO:0009605,GO:0009653,GO:0009791,GO:0009886,GO:0009987,GO:0009991,GO:0010259,GO:0010623,GO:0012501,GO:0012506,GO:0015980,GO:0016020,GO:0016043,GO:0016052,GO:0016236,GO:0016237,GO:0016740,GO:0018410,GO:0019538,GO:0019776,GO:0022411,GO:0022607,GO:0030139,GO:0030154,GO:0030234,GO:0030659,GO:0030666,GO:0030670,GO:0031090,GO:0031386,GO:0031410,GO:0031667,GO:0031668,GO:0031669,GO:0031982,GO:0032258,GO:0032501,GO:0032502,GO:0032991,GO:0033036,GO:0033365,GO:0033554,GO:0034045,GO:0034274,GO:0034613,GO:0034645,GO:0034727,GO:0035069,GO:0035096,GO:0036211,GO:0042157,GO:0042158,GO:0042594,GO:0043085,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0043687,GO:0044042,GO:0044085,GO:0044093,GO:0044237,GO:0044238,GO:0044247,GO:0044248,GO:0044249,GO:0044260,GO:0044262,GO:0044264,GO:0044267,GO:0044275,GO:0044422,GO:0044424,GO:0044433,GO:0044444,GO:0044446,GO:0044464,GO:0044804,GO:0044805,GO:0045335,GO:0048468,GO:0048707,GO:0048856,GO:0048869,GO:0050790,GO:0050896,GO:0051179,GO:0051641,GO:0051716,GO:0055114,GO:0060033,GO:0061723,GO:0061726,GO:0061912,GO:0061919,GO:0065007,GO:0065009,GO:0070727,GO:0070925,GO:0071496,GO:0071704,GO:0071840,GO:0072665,GO:0097708,GO:0098588,GO:0098772,GO:0098805,GO:1901564,GO:1901566,GO:1901575,GO:1901576,GO:1902494,GO:1903008,GO:1905037,GO:1990234
Preferred nameATG12
Descriptionautophagosome assembly
COG categoryO
Max annot lvl2759|Eukaryota
EggNOG OGsKOG3439@1|root,KOG3439@2759|Eukaryota
Evalue1.65e-30
Seed ortholog2880.D7G0N6
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionAutophagy-related protein 12
Ec32 orthologEc-14_001670.1
TranscriptId173809
TrackFilteredModels1
ProteinId173487
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|173487gene_15123Tribonema minus UTEX_B_3156 geneContig_103 403218..403947 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|173487Trimin1|173487|e_gw1.103.21.1Tribonema minus UTEX_B_3156 polypeptideContig_103 403218..403947 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_15123_2exon_15123_2Tribonema minus UTEX_B_3156 exonContig_103 403218..403340 -
exon_15123_1exon_15123_1Tribonema minus UTEX_B_3156 exonContig_103 403810..403947 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_15123CDS_15123Tribonema minus UTEX_B_3156 CDSContig_103 403810..403947 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_15123 ID=mRNA_15123|Name=jgi.p|Trimin1|173487|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=261bp|location=Sequence derived from alignment at Contig_103:403218..403947- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
GTGAGGATCCACTTCATGCCCATATCCAACGCGCCGATATTGCGGCAGAC
CAAGTTTAGAGTGCCGGGCTCTTGGACTTTCCAAGACTTGCAAGCGTCTT
TGCGCACTCAACTCAAACTTCCTAGCTCCACGCCTCTGTTTGTGTACTGC
AACAGCGCTTTCTGCCCAAGCCCGGACCAGATCCTGATTGAGCTGTTCCT
GTGCTTTGGGACAGGGGGCGAGCTTGTCATCAACTACAGCCTCAGTGAGG
CTTGGGGATAG
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protein sequence of jgi.p|Trimin1|173487

>Trimin1|173487|e_gw1.103.21.1 ID=Trimin1|173487|e_gw1.103.21.1|Name=jgi.p|Trimin1|173487|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=87bp
VRIHFMPISNAPILRQTKFRVPGSWTFQDLQASLRTQLKLPSSTPLFVYC
NSAFCPSPDQILIELFLCFGTGGELVINYSLSEAWG*
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mRNA from alignment at Contig_103:403218..403947-

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_15123 ID=mRNA_15123|Name=jgi.p|Trimin1|173487|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=730bp|location=Sequence derived from alignment at Contig_103:403218..403947- (Tribonema minus UTEX_B_3156 )
GTGAGGATCCACTTCATGCCCATATCCAACGCGCCGATATTGCGGCAGAC
CAAGTTTAGAGTGCCGGGCTCTTGGACTTTCCAAGACTTGCAAGCGTCTT
TGCGCACTCAACTCAAACTTCCTAGCTCCACGCCTCTGGTGAGTTTGACT
GACTGAATTACCACGCATATTACTCGCTGATGTCAAGCACCGCAAGTTGT
GCTCCTTGTTGTCACCACCACATTGATGCATGCGCTCTCAGAGTGCAGGC
TCTGCAACCTTTGGAACGACAGCCGTGCATGACCACACAAGGCCATTCTC
AACCTGAATGGCAACGCTCAGTCGCTGTGACGCAAAAAATAATGCTGTTC
AGTTGCTGCATCGTGCGGCGACCGACGTCTGCATCATATCACTACTACTT
ATAACTACTACTCAAGTGGCGCGTTACGCGGCCATTCATCAACAGACCAG
ACCATCCAAGTGCTACCTGGTTGAGAAAGCCGACTTGTTTCTGCACTTGT
GAGCATGCCAAAAGATGTGCACGAGTTTGTGTGCCTTCTACTAATCGTAC
CTGTTCATCACTCAGCCTATCTACCCTTACGCCCCATGCTGCTGCTGCTG
CGCACAGTTTGTGTACTGCAACAGCGCTTTCTGCCCAAGCCCGGACCAGA
TCCTGATTGAGCTGTTCCTGTGCTTTGGGACAGGGGGCGAGCTTGTCATC
AACTACAGCCTCAGTGAGGCTTGGGGATAG
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Coding sequence (CDS) from alignment at Contig_103:403218..403947-

>mRNA_15123 ID=mRNA_15123|Name=jgi.p|Trimin1|173487|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=261bp|location=Sequence derived from alignment at Contig_103:403218..403947- (Tribonema minus UTEX_B_3156 )
GTGAGGATCCACTTCATGCCCATATCCAACGCGCCGATATTGCGGCAGAC
CAAGTTTAGAGTGCCGGGCTCTTGGACTTTCCAAGACTTGCAAGCGTCTT
TGCGCACTCAACTCAAACTTCCTAGCTCCACGCCTCTGTTTGTGTACTGC
AACAGCGCTTTCTGCCCAAGCCCGGACCAGATCCTGATTGAGCTGTTCCT
GTGCTTTGGGACAGGGGGCGAGCTTGTCATCAACTACAGCCTCAGTGAGG
CTTGGGGATAG
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