mRNA_15064 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|174409
Unique NamemRNA_15064
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|174409 vs. uniprot
Match: A0A836CM25_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CM25_9STRA)

HSP 1 Score: 125 bits (315), Expect = 1.080e-36
Identity = 64/64 (100.00%), Postives = 64/64 (100.00%), Query Frame = 1 
Query:    1 EVYNPRAVIPHAVLLRQAFAHCGKFPTAASRRSLDRVSVPVWLIVVDRNSLEITLLDVIVSVLR 192
            EVYNPRAVIPHAVLLRQAFAHCGKFPTAASRRSLDRVSVPVWLIVVDRNSLEITLLDVIVSVLR
Sbjct:    1 EVYNPRAVIPHAVLLRQAFAHCGKFPTAASRRSLDRVSVPVWLIVVDRNSLEITLLDVIVSVLR 64
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BLAST of jgi.p|Trimin1|174409 vs. uniprot
Match: A0A4V2JP10_9CYAN (Uncharacterized protein n=1 Tax=Westiellopsis prolifica IICB1 TaxID=1970206 RepID=A0A4V2JP10_9CYAN)

HSP 1 Score: 92.8 bits (229), Expect = 2.040e-23
Identity = 44/55 (80.00%), Postives = 48/55 (87.27%), Query Frame = 1 
Query:    1 EVYNPRAVIPHAVLLRQAFAHCGKFPTAASRRSLDRVSVPVWLIVVDRNSLEITL 165
            EVYNPRA +PHAVLLRQAFAHCGKFPTAASRRSLDRVSVPVWLI++    L + L
Sbjct:   16 EVYNPRAFLPHAVLLRQAFAHCGKFPTAASRRSLDRVSVPVWLIILSDQLLIVAL 70
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BLAST of jgi.p|Trimin1|174409 vs. uniprot
Match: A0A0V0H8Z9_SOLCH (Putative ovule protein n=1 Tax=Solanum chacoense TaxID=4108 RepID=A0A0V0H8Z9_SOLCH)

HSP 1 Score: 85.1 bits (209), Expect = 2.160e-19
Identity = 38/45 (84.44%), Postives = 42/45 (93.33%), Query Frame = 1 
Query:    1 EVYNPRAVIPHAVLLRQAFAHCGKFPTAASRRSLDRVSVPVWLIV 135
            EVYNP+  +PHAVLLRQAFAHCGKFPTAASRRSL RVSVPVWL++
Sbjct:  109 EVYNPQTFLPHAVLLRQAFAHCGKFPTAASRRSLGRVSVPVWLLI 153
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BLAST of jgi.p|Trimin1|174409 vs. uniprot
Match: A0A382B7Y3_9ZZZZ (Uncharacterized protein (Fragment) n=1 Tax=marine metagenome TaxID=408172 RepID=A0A382B7Y3_9ZZZZ)

HSP 1 Score: 80.5 bits (197), Expect = 1.250e-18
Identity = 37/44 (84.09%), Postives = 39/44 (88.64%), Query Frame = 1 
Query:    1 EVYNPRAVIPHAVLLRQAFAHCGKFPTAASRRSLDRVSVPVWLI 132
            EVYNP+A IPHA  LRQAFAHC +FPTAASRRSL RVSVPVWLI
Sbjct:   26 EVYNPKAFIPHAAWLRQAFAHCARFPTAASRRSLGRVSVPVWLI 69
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BLAST of jgi.p|Trimin1|174409 vs. uniprot
Match: A0A0V0H4B3_SOLCH (Putative ovule protein (Fragment) n=1 Tax=Solanum chacoense TaxID=4108 RepID=A0A0V0H4B3_SOLCH)

HSP 1 Score: 80.9 bits (198), Expect = 6.290e-18
Identity = 37/40 (92.50%), Postives = 37/40 (92.50%), Query Frame = 2 
Query:    8 TTQGPSSLTRYCSVRLSPIAENSPLLPPVGVWTVSQFQCG 127
            TTQGPSS TRYCSVRLSPIAENSPLLPPVGVW VSQ QCG
Sbjct:  107 TTQGPSSRTRYCSVRLSPIAENSPLLPPVGVWAVSQSQCG 146
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BLAST of jgi.p|Trimin1|174409 vs. uniprot
Match: A0A7J8SXX8_GOSDV (Uncharacterized protein n=1 Tax=Gossypium davidsonii TaxID=34287 RepID=A0A7J8SXX8_GOSDV)

HSP 1 Score: 77.0 bits (188), Expect = 2.090e-17
Identity = 34/42 (80.95%), Postives = 38/42 (90.48%), Query Frame = 2 
Query:    2 RFTTQGPSSLTRYCSVRLSPIAENSPLLPPVGVWTVSQFQCG 127
            +FTT GPS+ TR+CSVRLSPIA+NSPLLPPVGVW VSQ QCG
Sbjct:   16 KFTTCGPSTFTRHCSVRLSPIAKNSPLLPPVGVWAVSQSQCG 57
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BLAST of jgi.p|Trimin1|174409 vs. uniprot
Match: A0A0N7F2B4_9BACT (Uncharacterized protein n=1 Tax=uncultured bacterium 5G12 TaxID=1701325 RepID=A0A0N7F2B4_9BACT)

HSP 1 Score: 78.2 bits (191), Expect = 2.210e-17
Identity = 36/44 (81.82%), Postives = 38/44 (86.36%), Query Frame = 1 
Query:    4 VYNPRAVIPHAVLLRQAFAHCGKFPTAASRRSLDRVSVPVWLIV 135
            VYNP+A  PHA  LRQAFAHC +FPTAASRRSL RVSVPVWLIV
Sbjct:    9 VYNPKAFFPHAASLRQAFAHCARFPTAASRRSLGRVSVPVWLIV 52
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BLAST of jgi.p|Trimin1|174409 vs. uniprot
Match: A0A830CKQ4_9LAMI (Uncharacterized protein n=1 Tax=Phtheirospermum japonicum TaxID=374723 RepID=A0A830CKQ4_9LAMI)

HSP 1 Score: 76.6 bits (187), Expect = 4.400e-17
Identity = 38/57 (66.67%), Postives = 44/57 (77.19%), Query Frame = 1 
Query:    1 EVYNPRAVIPHAVLLRQAFAHCGKFPTAASRRSLDRVSVPVWLIVVDRNSLEITLLD 171
            EV++P A   HA LLRQAF HCGKFPTAASRRSL+RVSVPVWLI++    L I L+ 
Sbjct:   10 EVHDPWAFYLHASLLRQAFVHCGKFPTAASRRSLNRVSVPVWLIILSNQLLIIALVS 66
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BLAST of jgi.p|Trimin1|174409 vs. uniprot
Match: A0A0E1XB26_STAAU (Uncharacterized protein n=2 Tax=Staphylococcus TaxID=1279 RepID=A0A0E1XB26_STAAU)

HSP 1 Score: 76.6 bits (187), Expect = 4.880e-17
Identity = 34/42 (80.95%), Postives = 37/42 (88.10%), Query Frame = 1 
Query:    1 EVYNPRAVIPHAVLLRQAFAHCGKFPTAASRRSLDRVSVPVW 126
            E Y+P+  I HA LLRQAFAHCG+FPTAASRRSLDRVSVPVW
Sbjct:   14 EFYDPKTFITHAALLRQAFAHCGRFPTAASRRSLDRVSVPVW 55
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BLAST of jgi.p|Trimin1|174409 vs. uniprot
Match: A0A381XN73_9ZZZZ (Uncharacterized protein (Fragment) n=1 Tax=marine metagenome TaxID=408172 RepID=A0A381XN73_9ZZZZ)

HSP 1 Score: 77.0 bits (188), Expect = 7.580e-17
Identity = 35/41 (85.37%), Postives = 37/41 (90.24%), Query Frame = 1 
Query:    4 VYNPRAVIPHAVLLRQAFAHCGKFPTAASRRSLDRVSVPVW 126
            VY+P+AVIPHA  LRQAFAHC KFPTAASRRSL RVSVPVW
Sbjct:   45 VYSPKAVIPHAASLRQAFAHCAKFPTAASRRSLGRVSVPVW 85
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|174409 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A836CM25_9STRA1.080e-36100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A4V2JP10_9CYAN2.040e-2380.00Uncharacterized protein n=1 Tax=Westiellopsis prol... [more]
A0A0V0H8Z9_SOLCH2.160e-1984.44Putative ovule protein n=1 Tax=Solanum chacoense T... [more]
A0A382B7Y3_9ZZZZ1.250e-1884.09Uncharacterized protein (Fragment) n=1 Tax=marine ... [more]
A0A0V0H4B3_SOLCH6.290e-1892.50Putative ovule protein (Fragment) n=1 Tax=Solanum ... [more]
A0A7J8SXX8_GOSDV2.090e-1780.95Uncharacterized protein n=1 Tax=Gossypium davidson... [more]
A0A0N7F2B4_9BACT2.210e-1781.82Uncharacterized protein n=1 Tax=uncultured bacteri... [more]
A0A830CKQ4_9LAMI4.400e-1766.67Uncharacterized protein n=1 Tax=Phtheirospermum ja... [more]
A0A0E1XB26_STAAU4.880e-1780.95Uncharacterized protein n=2 Tax=Staphylococcus Tax... [more]
A0A381XN73_9ZZZZ7.580e-1785.37Uncharacterized protein (Fragment) n=1 Tax=marine ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_114contigContig_114:208337..208531 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|174409|e_gw1.114.3.1
Max annot lvl1117|Cyanobacteria
EggNOG OGs2DPM9@1|root,332MQ@2|Bacteria,1GAJY@1117|Cyanobacteria
Evalue8.09e-22
Seed ortholog221288.JH992901_gene2608
Hectar predicted targeting categoryother localisation
TranscriptId174731
TrackFilteredModels1
ProteinId174409
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|174409gene_15064Tribonema minus UTEX_B_3156 geneContig_114 208337..208531 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_15064_1exon_15064_1Tribonema minus UTEX_B_3156 exonContig_114 208337..208531 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_15064CDS_15064Tribonema minus UTEX_B_3156 CDSContig_114 208337..208531 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|174409Trimin1|174409|e_gw1.114.3.1Tribonema minus UTEX_B_3156 polypeptideContig_114 208337..208531 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_15064 ID=mRNA_15064|Name=jgi.p|Trimin1|174409|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=195bp|location=Sequence derived from alignment at Contig_114:208337..208531- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
GAGGTTTACAACCCAAGGGCCGTCATCCCTCACGCGGTATTGCTCCGTCA
GGCTTTCGCCCATTGCGGAAAATTCCCCACTGCTGCCTCCCGTAGGAGTC
TGGACCGTGTCTCAGTTCCAGTGTGGCTGATCGTTGTGGATAGGAATAGT
CTTGAGATCACTTTGCTTGATGTCATTGTCTCCGTTTTGAGGTAG
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protein sequence of jgi.p|Trimin1|174409

>Trimin1|174409|e_gw1.114.3.1 ID=Trimin1|174409|e_gw1.114.3.1|Name=jgi.p|Trimin1|174409|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=65bp
EVYNPRAVIPHAVLLRQAFAHCGKFPTAASRRSLDRVSVPVWLIVVDRNS
LEITLLDVIVSVLR*
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mRNA from alignment at Contig_114:208337..208531-

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_15064 ID=mRNA_15064|Name=jgi.p|Trimin1|174409|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=195bp|location=Sequence derived from alignment at Contig_114:208337..208531- (Tribonema minus UTEX_B_3156 )
GAGGTTTACAACCCAAGGGCCGTCATCCCTCACGCGGTATTGCTCCGTCA
GGCTTTCGCCCATTGCGGAAAATTCCCCACTGCTGCCTCCCGTAGGAGTC
TGGACCGTGTCTCAGTTCCAGTGTGGCTGATCGTTGTGGATAGGAATAGT
CTTGAGATCACTTTGCTTGATGTCATTGTCTCCGTTTTGAGGTAG
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Coding sequence (CDS) from alignment at Contig_114:208337..208531-

>mRNA_15064 ID=mRNA_15064|Name=jgi.p|Trimin1|174409|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=195bp|location=Sequence derived from alignment at Contig_114:208337..208531- (Tribonema minus UTEX_B_3156 )
GAGGTTTACAACCCAAGGGCCGTCATCCCTCACGCGGTATTGCTCCGTCA
GGCTTTCGCCCATTGCGGAAAATTCCCCACTGCTGCCTCCCGTAGGAGTC
TGGACCGTGTCTCAGTTCCAGTGTGGCTGATCGTTGTGGATAGGAATAGT
CTTGAGATCACTTTGCTTGATGTCATTGTCTCCGTTTTGAGGTAG
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