mRNA_15056 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|352281
Unique NamemRNA_15056
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|352281 vs. uniprot
Match: A0A835ZMR1_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZMR1_9STRA)

HSP 1 Score: 243 bits (619), Expect = 1.870e-78
Identity = 181/181 (100.00%), Postives = 181/181 (100.00%), Query Frame = 2 
Query:  170 MGSCAAVAAAPRWRGGRAAASTCCGHDALMALRSHAPSTRQQRRRAAALPLSRCRLHTRVPRQNALRPRNRRACASTPGAAALLSNAISVRRVRDDVILXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSAQQPPFRICVAAGHCFACEHSLAGARRTHGAAAEQ 712
            MGSCAAVAAAPRWRGGRAAASTCCGHDALMALRSHAPSTRQQRRRAAALPLSRCRLHTRVPRQNALRPRNRRACASTPGAAALLSNAISVRRVRDDVILXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSAQQPPFRICVAAGHCFACEHSLAGARRTHGAAAEQ
Sbjct:    1 MGSCAAVAAAPRWRGGRAAASTCCGHDALMALRSHAPSTRQQRRRAAALPLSRCRLHTRVPRQNALRPRNRRACASTPGAAALLSNAISVRRVRDDVILXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSAQQPPFRICVAAGHCFACEHSLAGARRTHGAAAEQ 181
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|352281 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A835ZMR1_9STRA1.870e-78100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_114contigContig_114:153870..154775 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|352281|estExt_Genemark1.C_Ctg_1140021
Hectar predicted targeting categorymitochondrion
TranscriptId352603
TrackFilteredModels1
ProteinId352281
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|352281gene_15056Tribonema minus UTEX_B_3156 geneContig_114 153870..154775 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_15056_1exon_15056_1Tribonema minus UTEX_B_3156 exonContig_114 153870..154372 +
exon_15056_2exon_15056_2Tribonema minus UTEX_B_3156 exonContig_114 154462..154627 +
exon_15056_3exon_15056_3Tribonema minus UTEX_B_3156 exonContig_114 154730..154775 +


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR5_15056UTR5_15056Tribonema minus UTEX_B_3156 five_prime_UTRContig_114 153870..154038 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_15056CDS_15056Tribonema minus UTEX_B_3156 CDSContig_114 154039..154372 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|352281Trimin1|352281|estExt_Genemark1.C_Ctg_1140021Tribonema minus UTEX_B_3156 polypeptideContig_114 154039..154775 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_15056 ID=mRNA_15056|Name=jgi.p|Trimin1|352281|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=715bp|location=Sequence derived from alignment at Contig_114:153870..154775+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
CGGCGATGCACCAGATGGTGTCGCGCATTCGCGTCTGCAGGCCGCATGCA
TTGCGCCGTGTCGCGCACGTTTTGCCGCGCCGACGGGGCTCAGGGCCGAT
GTACATATATGTCGAAGTATACATATATTTGTACGCCGCATATCTCTTGC
GTGATTCAGGCTTGGCAGTATGGGGTCGTGCGCCGCTGTCGCCGCCGCTC
CGCGCTGGCGCGGAGGGCGCGCAGCAGCGTCCACGTGCTGCGGCCACGAC
GCCCTGATGGCTTTGCGCAGCCATGCGCCGAGCACGCGGCAGCAGCGGCG
GCGCGCGGCGGCACTACCCCTATCGCGCTGCCGCTTGCACACGCGCGTGC
CGCGGCAGAATGCTCTCAGGCCGCGCAACAGACGGGCATGCGCCAGCACG
CCGGGCGCCGCGGCATTGCTCAGCAACGCCATCTCCGTTCGCCGCGTGCG
CGATGATGTGATCCTTGCAGCGCGGGCTGGAGGCGCACCAGCAGCAGCAG
CAGGTGTTGCCGCCTCGAACTTCTTCGCGTGCGCATCGCCTCCGTCCGGG
GCCTCGGAGGCGGCGGCGCATCGGCGGCGCTGCACGCTCGCGCTGCGGCG
CCGCTCTGCGCAGCAGCCGCCGTTCCGCATTTGCGTCGCTGCTGGGCACT
GCTTCGCCTGTGAGCACAGCTTGGCAGGAGCGCGCCGCACGCACGGCGCT
GCCGCGGAGCAGTGA
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protein sequence of jgi.p|Trimin1|352281

>Trimin1|352281|estExt_Genemark1.C_Ctg_1140021 ID=Trimin1|352281|estExt_Genemark1.C_Ctg_1140021|Name=jgi.p|Trimin1|352281|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=182bp
MGSCAAVAAAPRWRGGRAAASTCCGHDALMALRSHAPSTRQQRRRAAALP
LSRCRLHTRVPRQNALRPRNRRACASTPGAAALLSNAISVRRVRDDVILA
ARAGGAPAAAAGVAASNFFACASPPSGASEAAAHRRRCTLALRRRSAQQP
PFRICVAAGHCFACEHSLAGARRTHGAAAEQ*
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mRNA from alignment at Contig_114:153870..154775+

Legend: exonfive_prime_UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_15056 ID=mRNA_15056|Name=jgi.p|Trimin1|352281|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=906bp|location=Sequence derived from alignment at Contig_114:153870..154775+ (Tribonema minus UTEX_B_3156 )
CGGCGATGCACCAGATGGTGTCGCGCATTCGCGTCTGCAGGCCGCATGCA
TTGCGCCGTGTCGCGCACGTTTTGCCGCGCCGACGGGGCTCAGGGCCGAT
GTACATATATGTCGAAGTATACATATATTTGTACGCCGCATATCTCTTGC
GTGATTCAGGCTTGGCAGTATGGGGTCGTGCGCCGCTGTCGCCGCCGCTC
CGCGCTGGCGCGGAGGGCGCGCAGCAGCGTCCACGTGCTGCGGCCACGAC
GCCCTGATGGCTTTGCGCAGCCATGCGCCGAGCACGCGGCAGCAGCGGCG
GCGCGCGGCGGCACTACCCCTATCGCGCTGCCGCTTGCACACGCGCGTGC
CGCGGCAGAATGCTCTCAGGCCGCGCAACAGACGGGCATGCGCCAGCACG
CCGGGCGCCGCGGCATTGCTCAGCAACGCCATCTCCGTTCGCCGCGTGCG
CGATGATGTGATCCTTGCAGCGCGGGCTGGAGGCGCACCAGCAGCAGCAG
CAGGTGAGCGCTGCCAGCGACGCGTGTGTCAGCTCGGCGGCAGGGCGGTC
ATTCCTTGCGCGCACAGCCACTGTCGCCGCTGCTGAGAAAAGGTGTTGCC
GCCTCGAACTTCTTCGCGTGCGCATCGCCTCCGTCCGGGGCCTCGGAGGC
GGCGGCGCATCGGCGGCGCTGCACGCTCGCGCTGCGGCGCCGCTCTGCGC
AGCAGCCGCCGTTCCGCATTTGCGTCGCTGCTGGGCACTGCTTCGCCTGT
GAGCACAGGTGTCATGTTCTGTTGCGGTCGAGTGCGCGCCGGCCAGCACA
CCACCGCCACCGCTGCCGCACGTTGTGGCAATGGCGCAAACGCGGCGCCG
CGTGCCGCAGCTTGGCAGGAGCGCGCCGCACGCACGGCGCTGCCGCGGAG
CAGTGA
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Coding sequence (CDS) from alignment at Contig_114:153870..154775+

>mRNA_15056 ID=mRNA_15056|Name=jgi.p|Trimin1|352281|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=546bp|location=Sequence derived from alignment at Contig_114:153870..154775+ (Tribonema minus UTEX_B_3156 )
ATGGGGTCGTGCGCCGCTGTCGCCGCCGCTCCGCGCTGGCGCGGAGGGCG
CGCAGCAGCGTCCACGTGCTGCGGCCACGACGCCCTGATGGCTTTGCGCA
GCCATGCGCCGAGCACGCGGCAGCAGCGGCGGCGCGCGGCGGCACTACCC
CTATCGCGCTGCCGCTTGCACACGCGCGTGCCGCGGCAGAATGCTCTCAG
GCCGCGCAACAGACGGGCATGCGCCAGCACGCCGGGCGCCGCGGCATTGC
TCAGCAACGCCATCTCCGTTCGCCGCGTGCGCGATGATGTGATCCTTGCA
GCGCGGGCTGGAGGCGCACCAGCAGCAGCAGCAGGTGTTGCCGCCTCGAA
CTTCTTCGCGTGCGCATCGCCTCCGTCCGGGGCCTCGGAGGCGGCGGCGC
ATCGGCGGCGCTGCACGCTCGCGCTGCGGCGCCGCTCTGCGCAGCAGCCG
CCGTTCCGCATTTGCGTCGCTGCTGGGCACTGCTTCGCCTGTGAGCACAG
CTTGGCAGGAGCGCGCCGCACGCACGGCGCTGCCGCGGAGCAGTGA
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