mRNA_15053 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|133072
Unique NamemRNA_15053
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
BLAST of jgi.p|Trimin1|133072 vs. uniprot
Match: A0A835ZD77_9STRA (Kinase-like domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZD77_9STRA)

HSP 1 Score: 166 bits (420), Expect = 2.790e-52
Identity = 79/79 (100.00%), Postives = 79/79 (100.00%), Query Frame = 1
Query:    1 RSHPFVCSLYTAFQDARHVYMVLEYAACGDMAALVTTHLKRCLTEAEMRFYASEIVVALEWVHLNGVVFRDLKPENVLV 237
            RSHPFVCSLYTAFQDARHVYMVLEYAACGDMAALVTTHLKRCLTEAEMRFYASEIVVALEWVHLNGVVFRDLKPENVLV
Sbjct:    1 RSHPFVCSLYTAFQDARHVYMVLEYAACGDMAALVTTHLKRCLTEAEMRFYASEIVVALEWVHLNGVVFRDLKPENVLV 79          
BLAST of jgi.p|Trimin1|133072 vs. uniprot
Match: A0A6H5LBF6_9PHAE (Protein kinase domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5LBF6_9PHAE)

HSP 1 Score: 119 bits (297), Expect = 1.990e-29
Identity = 53/78 (67.95%), Postives = 64/78 (82.05%), Query Frame = 1
Query:    4 SHPFVCSLYTAFQDARHVYMVLEYAACGDMAALVTTHLKRCLTEAEMRFYASEIVVALEWVHLNGVVFRDLKPENVLV 237
            +HPFVCSLYTAFQD+RH+Y++++Y A GD+  LV    KR LTE E RFY SEIV ALEWVHL+G V+RDLKPENVL+
Sbjct:  152 AHPFVCSLYTAFQDSRHLYLLMDYCAGGDLKTLVRDVAKRALTEEEARFYVSEIVAALEWVHLHGYVYRDLKPENVLI 229          
BLAST of jgi.p|Trimin1|133072 vs. uniprot
Match: UPI001D529528 (uncharacterized protein n=1 Tax=Ogataea philodendri TaxID=1378263 RepID=UPI001D529528)

HSP 1 Score: 91.7 bits (226), Expect = 7.890e-20
Identity = 37/78 (47.44%), Postives = 57/78 (73.08%), Query Frame = 1
Query:    4 SHPFVCSLYTAFQDARHVYMVLEYAACGDMAALVTTHLKRCLTEAEMRFYASEIVVALEWVHLNGVVFRDLKPENVLV 237
            SHPF+ +LY +FQ   H+Y+ +EY   G+    + T   +C++EA+ RFYA+E+V ALE++HL G ++RDLKPEN+L+
Sbjct:  420 SHPFIVTLYHSFQSEDHLYLCMEYCMGGEFFRALQTRKMKCISEADARFYAAEVVAALEYLHLMGFIYRDLKPENILL 497          
BLAST of jgi.p|Trimin1|133072 vs. uniprot
Match: I1C953_RHIO9 (Protein kinase domain-containing protein n=1 Tax=Rhizopus delemar (strain RA 99-880 / ATCC MYA-4621 / FGSC 9543 / NRRL 43880) TaxID=246409 RepID=I1C953_RHIO9)

HSP 1 Score: 89.0 bits (219), Expect = 8.330e-20
Identity = 36/78 (46.15%), Postives = 55/78 (70.51%), Query Frame = 1
Query:    4 SHPFVCSLYTAFQDARHVYMVLEYAACGDMAALVTTHLKRCLTEAEMRFYASEIVVALEWVHLNGVVFRDLKPENVLV 237
            +HPF+ SLY +FQ   HVY V+EY   G+    + +   +CL+E   +FYA+E++ ALE++HL G ++RDLKPEN+L+
Sbjct:   21 NHPFIVSLYHSFQSQEHVYFVMEYCLGGEFFRALQSRPGKCLSEEGAKFYAAEVIAALEYLHLQGFIYRDLKPENILL 98          
BLAST of jgi.p|Trimin1|133072 vs. uniprot
Match: A0A0L0STD2_ALLM3 (AGC/RSK protein kinase n=1 Tax=Allomyces macrogynus (strain ATCC 38327) TaxID=578462 RepID=A0A0L0STD2_ALLM3)

HSP 1 Score: 91.3 bits (225), Expect = 1.020e-19
Identity = 37/78 (47.44%), Postives = 58/78 (74.36%), Query Frame = 1
Query:    4 SHPFVCSLYTAFQDARHVYMVLEYAACGDMAALVTTHLKRCLTEAEMRFYASEIVVALEWVHLNGVVFRDLKPENVLV 237
            +HPF+ ++Y +FQ AR++Y  LEY   G+    + +   RCL E E+RFY +E+V+ALE++H+NG ++RDLKPEN+L+
Sbjct:  376 NHPFLITMYHSFQTARNIYFCLEYCVGGEFFRALQSRPGRCLREDEVRFYVAEVVLALEYLHMNGYIYRDLKPENILL 453          
BLAST of jgi.p|Trimin1|133072 vs. uniprot
Match: A0A0L0SJI7_ALLM3 (AGC/RSK protein kinase n=1 Tax=Allomyces macrogynus (strain ATCC 38327) TaxID=578462 RepID=A0A0L0SJI7_ALLM3)

HSP 1 Score: 91.3 bits (225), Expect = 1.070e-19
Identity = 37/78 (47.44%), Postives = 58/78 (74.36%), Query Frame = 1
Query:    4 SHPFVCSLYTAFQDARHVYMVLEYAACGDMAALVTTHLKRCLTEAEMRFYASEIVVALEWVHLNGVVFRDLKPENVLV 237
            +HPF+ ++Y +FQ AR++Y  LEY   G+    + +   RCL E E+RFY +E+V+ALE++H+NG ++RDLKPEN+L+
Sbjct:  423 NHPFLVTMYHSFQTARNIYFCLEYCVGGEFFRALQSRPGRCLREDEVRFYVAEVVLALEYLHMNGYIYRDLKPENILL 500          
BLAST of jgi.p|Trimin1|133072 vs. uniprot
Match: W1QKZ2_OGAPD (Protein kinase domain-containing protein n=3 Tax=Ogataea TaxID=461281 RepID=W1QKZ2_OGAPD)

HSP 1 Score: 91.3 bits (225), Expect = 1.080e-19
Identity = 37/77 (48.05%), Postives = 56/77 (72.73%), Query Frame = 1
Query:    7 HPFVCSLYTAFQDARHVYMVLEYAACGDMAALVTTHLKRCLTEAEMRFYASEIVVALEWVHLNGVVFRDLKPENVLV 237
            HPF+ +LY +FQ   H+Y+ +EY   G+    + T   +C++EA+ RFYASE+V ALE++HL G ++RDLKPEN+L+
Sbjct:  424 HPFIVTLYHSFQSEDHLYLCMEYCMGGEFFRALQTRKMKCISEADARFYASEVVAALEYLHLMGFIYRDLKPENILL 500          
BLAST of jgi.p|Trimin1|133072 vs. uniprot
Match: G3B1U9_CANTC (Protein kinase domain-containing protein n=1 Tax=Candida tenuis (strain ATCC 10573 / BCRC 21748 / CBS 615 / JCM 9827 / NBRC 10315 / NRRL Y-1498 / VKM Y-70) TaxID=590646 RepID=G3B1U9_CANTC)

HSP 1 Score: 90.5 bits (223), Expect = 1.930e-19
Identity = 36/78 (46.15%), Postives = 56/78 (71.79%), Query Frame = 1
Query:    4 SHPFVCSLYTAFQDARHVYMVLEYAACGDMAALVTTHLKRCLTEAEMRFYASEIVVALEWVHLNGVVFRDLKPENVLV 237
            +HPF+ +LY +FQ   ++Y+ +EY   G+    + T   RC+ E++ RFY SE+V ALE++HLNG ++RDLKPEN+L+
Sbjct:  218 NHPFIITLYHSFQSEDYLYLCMEYCMGGEFFRALQTRENRCINESDARFYVSEVVAALEYLHLNGFIYRDLKPENILL 295          
BLAST of jgi.p|Trimin1|133072 vs. uniprot
Match: A0A367IW02_RHIAZ (Protein kinase domain-containing protein n=5 Tax=Rhizopus TaxID=4842 RepID=A0A367IW02_RHIAZ)

HSP 1 Score: 90.1 bits (222), Expect = 2.340e-19
Identity = 38/78 (48.72%), Postives = 56/78 (71.79%), Query Frame = 1
Query:    4 SHPFVCSLYTAFQDARHVYMVLEYAACGDMAALVTTHLKRCLTEAEMRFYASEIVVALEWVHLNGVVFRDLKPENVLV 237
            +HPF+ SLY +FQ   HVY V+EY + G+    + +   +CL E E RFYA+E++ ALE++HL G ++RDLKPEN+L+
Sbjct:  169 NHPFIVSLYHSFQSQDHVYFVMEYCSGGEFFRALQSWPGKCLCEDEARFYAAEVISALEYLHLQGFIYRDLKPENILL 246          
BLAST of jgi.p|Trimin1|133072 vs. uniprot
Match: A0A8J5X5G5_DIALT (Protein kinase domain-containing protein n=2 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J5X5G5_DIALT)

HSP 1 Score: 89.4 bits (220), Expect = 5.160e-19
Identity = 42/78 (53.85%), Postives = 54/78 (69.23%), Query Frame = 1
Query:    4 SHPFVCSLYTAFQDARHVYMVLEYAACGDMAALVTTHLKRCLTEAEMRFYASEIVVALEWVHLNGVVFRDLKPENVLV 237
            +HPFV  L  AFQD R  YM LEY + GD+  L+       L E   RFYA++IVVAL+W+HL+GV++RDLK ENVL+
Sbjct:   64 AHPFVLGLVAAFQDERWAYMALEYCSGGDLFELLQRQPYARLAERAARFYAAQIVVALQWLHLHGVLYRDLKAENVLI 141          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|133072 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835ZD77_9STRA2.790e-52100.00Kinase-like domain-containing protein (Fragment) n... [more]
A0A6H5LBF6_9PHAE1.990e-2967.95Protein kinase domain-containing protein n=2 Tax=E... [more]
UPI001D5295287.890e-2047.44uncharacterized protein n=1 Tax=Ogataea philodendr... [more]
I1C953_RHIO98.330e-2046.15Protein kinase domain-containing protein n=1 Tax=R... [more]
A0A0L0STD2_ALLM31.020e-1947.44AGC/RSK protein kinase n=1 Tax=Allomyces macrogynu... [more]
A0A0L0SJI7_ALLM31.070e-1947.44AGC/RSK protein kinase n=1 Tax=Allomyces macrogynu... [more]
W1QKZ2_OGAPD1.080e-1948.05Protein kinase domain-containing protein n=3 Tax=O... [more]
G3B1U9_CANTC1.930e-1946.15Protein kinase domain-containing protein n=1 Tax=C... [more]
A0A367IW02_RHIAZ2.340e-1948.72Protein kinase domain-containing protein n=5 Tax=R... [more]
A0A8J5X5G5_DIALT5.160e-1953.85Protein kinase domain-containing protein n=2 Tax=D... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_114contigContig_114:140409..141954 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|133072|gw1.114.15.1
BRITEko00000,ko01000
KEGG koko:K08286
GOsGO:0000166,GO:0000749,GO:0003674,GO:0003824,GO:0004672,GO:0004674,GO:0005488,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005886,GO:0005937,GO:0006464,GO:0006468,GO:0006793,GO:0006796,GO:0006807,GO:0006810,GO:0006811,GO:0006820,GO:0006869,GO:0007154,GO:0007165,GO:0008144,GO:0008150,GO:0008152,GO:0009987,GO:0010033,GO:0010876,GO:0015711,GO:0015748,GO:0015914,GO:0016020,GO:0016043,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016773,GO:0017076,GO:0019236,GO:0019538,GO:0023052,GO:0030427,GO:0030554,GO:0031136,GO:0031137,GO:0031139,GO:0032368,GO:0032370,GO:0032553,GO:0032555,GO:0032559,GO:0032879,GO:0033036,GO:0034204,GO:0035556,GO:0035639,GO:0036094,GO:0036211,GO:0042221,GO:0042995,GO:0043167,GO:0043168,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043269,GO:0043270,GO:0043332,GO:0043412,GO:0043900,GO:0043902,GO:0044070,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044424,GO:0044463,GO:0044464,GO:0045332,GO:0046777,GO:0046999,GO:0048518,GO:0048522,GO:0050789,GO:0050794,GO:0050896,GO:0051049,GO:0051050,GO:0051128,GO:0051130,GO:0051179,GO:0051234,GO:0051286,GO:0051716,GO:0061024,GO:0061091,GO:0061092,GO:0065007,GO:0065008,GO:0070887,GO:0071310,GO:0071444,GO:0071702,GO:0071704,GO:0071840,GO:0071944,GO:0097035,GO:0097159,GO:0097367,GO:0120025,GO:0120038,GO:0140096,GO:1901265,GO:1901363,GO:1901564,GO:1903793,GO:1905952,GO:1905954,GO:2000241,GO:2000243,GO:2001138,GO:2001140
Preferred nameNRC2
Descriptionto Saccharomyces cerevisiae KIN82 (YCR091W) and YNR047W
COG categoryT
Max annot lvl4751|Fungi
EggNOG OGsKOG0610@1|root,KOG0610@2759|Eukaryota,38ERQ@33154|Opisthokonta,3NUP7@4751|Fungi,3QMER@4890|Ascomycota,3RRQ4@4891|Saccharomycetes
Evalue1.77e-20
Seed ortholog1005962.W1QKZ2
Hectar predicted targeting categoryother localisation
TranscriptId133394
TrackFilteredModels1
ProteinId133072
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|133072gene_15053Tribonema minus UTEX_B_3156 geneContig_114 140409..141954 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|133072Trimin1|133072|gw1.114.15.1Tribonema minus UTEX_B_3156 polypeptideContig_114 140409..141954 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_15053_2exon_15053_2Tribonema minus UTEX_B_3156 exonContig_114 140409..140444 -
exon_15053_1exon_15053_1Tribonema minus UTEX_B_3156 exonContig_114 141754..141954 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_15053CDS_15053Tribonema minus UTEX_B_3156 CDSContig_114 141754..141954 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_15053 ID=mRNA_15053|Name=jgi.p|Trimin1|133072|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=237bp|location=Sequence derived from alignment at Contig_114:140409..141954- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
CGCAGCCACCCGTTCGTCTGCTCGCTATACACGGCATTTCAGGACGCGCG
ACACGTGTACATGGTGCTGGAGTATGCGGCGTGCGGCGACATGGCGGCGC
TCGTGACGACGCACCTCAAGCGCTGCCTGACGGAGGCCGAGATGCGCTTC
TACGCGAGCGAGATCGTGGTGGCGCTCGAGTGGGTTCACCTCAACGGCGT
GGTCTTTCGCGACCTGAAGCCCGAGAACGTCCTCGTC
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protein sequence of jgi.p|Trimin1|133072

>Trimin1|133072|gw1.114.15.1 ID=Trimin1|133072|gw1.114.15.1|Name=jgi.p|Trimin1|133072|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=79bp
RSHPFVCSLYTAFQDARHVYMVLEYAACGDMAALVTTHLKRCLTEAEMRF
YASEIVVALEWVHLNGVVFRDLKPENVLV
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mRNA from alignment at Contig_114:140409..141954-

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_15053 ID=mRNA_15053|Name=jgi.p|Trimin1|133072|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1546bp|location=Sequence derived from alignment at Contig_114:140409..141954- (Tribonema minus UTEX_B_3156 )
CGCAGCCACCCGTTCGTCTGCTCGCTATACACGGCATTTCAGGACGCGCG ACACGTGTACATGGTGCTGGAGTATGCGGCGTGCGGCGACATGGCGGCGC TCGTGACGACGCACCTCAAGCGCTGCCTGACGGAGGCCGAGATGCGCTTC TACGCGAGCGAGATCGTGGTGGCGCTCGAGTGGGTTCACCTCAACGGCGT GGTGAGCGCCGCTGCCGATGTGTGTAACTGTAACAGGCTGTAAGTGTCCG CTATTCTTATCCGTAGCGATCTGTGGCGGGGTGCTTGTGCTGTGACGCGC AGTAGACACGCTTCAAAAGTTATGTTGGTACTTCCAAGTAGAAGTATTAT ACTTCTGAAGTATGCGATTCTTAGGTGGGTACATGTATGTATACGGAGTC GAGATGCGTTTCTACGCGAGCAATATCGTGGTTGCGCTCGAGTGGGTCCA CCTTAACGGCGTGGTGAGCGCTGCTGCCGATGTGTGTGGCTGTAGCAGCC TGTAACTGTCCGCCACTCTTGTCCGGAACGGTCTGCGGCAAGGTGCTCGT GCTGCTGTGGTGCCGTGCGGTAGACACGCTGCAAAAGGTACGTTGGTGTG GTGTAGAAGTACAGTGTAGAGGTGGGTATGTCACAGAAGCGGAGATGCGC TTGTACGCAAGCGACATCATCGTCACACGCGAGTGGGTCCACGTCAACGG CGTGGTGAGCGCTGCCGCCATGGGGATGTAACTGCCCGTAACTGCCGGGC CGCAAGTGGTCCGTAGTTGTCGTCAACATGGGCAGGTTCATGGGGCTGCA GGGTGGTGGGAGGGTGTGTCGTAGCCACCGGTGTCCGGCGAGTGCGCTCA CGCCGCCGCCGTCGTCGTCGCCGCCGCTGCCACATGTGTTTGGCGACCGG GGGGGGGGGGGGGGGGGAGCTACTGAGGAGTGCTCTTGCACTGTGCGCCG TGCTGTGCTCAAAAGCGCTGGCCATGTACCGCCGGAATAACAGCTGACGT GCTTTCACAGCCGCGTCGCAACGCACAACACTGACGCCAGCAACCATCCT AGATTTTGTTGAACGCCAAACTCTGAGCGCTTGCCGCGATGGTGCGCTTT CGCCCTTGATGCATACCTTGAAGGTACTTTGTGAGCGATGTGCAGATCAG CGCGATTAGGGTTAGGGTTAGGTTGTGGCGTTACACGGCCTGCTGCCCTC CTGCTGCCGCGCTTCCATCACCTGTGTTGTAGCCATCAGTGTCCAGCGAG TGAGCTCACGCCGCCGCCACTGCCACCGTGGCCGCCGCCGCTGCCGCGAT CCCATCACCCCTGGCCGCAGCCGCTGCCGCGTCGTCATCCCTGGCCGCCG CCGTTGCCGCGTTCCCTTCATCTTGGCATCGGTGTCCGGCGAGTGCGCTC ACACCGCCGCTGCCGCTGTTGCTGTCGCGTTATTCTCACATCTGCCAGCC GTATCCGATGAGCGCGCTCACGCCGCCGCCGCTGCCGCCGCCGCCGCGCC GCGCGCACAGGTCTTTCGCGACCTGAAGCCCGAGAACGTCCTCGTC
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Coding sequence (CDS) from alignment at Contig_114:140409..141954-

>mRNA_15053 ID=mRNA_15053|Name=jgi.p|Trimin1|133072|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=237bp|location=Sequence derived from alignment at Contig_114:140409..141954- (Tribonema minus UTEX_B_3156 )
CGCAGCCACCCGTTCGTCTGCTCGCTATACACGGCATTTCAGGACGCGCG
ACACGTGTACATGGTGCTGGAGTATGCGGCGTGCGGCGACATGGCGGCGC
TCGTGACGACGCACCTCAAGCGCTGCCTGACGGAGGCCGAGATGCGCTTC
TACGCGAGCGAGATCGTGGTGGCGCTCGAGTGGGTTCACCTCAACGGCGT
GGTCTTTCGCGACCTGAAGCCCGAGAACGTCCTCGTC
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