mRNA_15051 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|137026
Unique NamemRNA_15051
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|137026 vs. uniprot
Match: A0A836CK44_9STRA (MULE domain-containing protein (Fragment) n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A836CK44_9STRA)

HSP 1 Score: 122 bits (307), Expect = 2.570e-35
Identity = 64/67 (95.52%), Postives = 65/67 (97.01%), Query Frame = 1 
Query:    1 VVVAVAFGIAMLDAFGAGYDRMVLLDATGGTNKYGYQLYSLVVVDDFREGVPVAFMLTSSQAAKEVK 201
            +VVAVAFGIAMLDAFGAG DRMVLLDATGGTNKYGYQLYSLVVVDDFRE VPVAFMLTSSQAAKEVK
Sbjct:    1 IVVAVAFGIAMLDAFGAGDDRMVLLDATGGTNKYGYQLYSLVVVDDFREDVPVAFMLTSSQAAKEVK 67
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BLAST of jgi.p|Trimin1|137026 vs. uniprot
Match: E1ZI21_CHLVA (MULE domain-containing protein n=1 Tax=Chlorella variabilis TaxID=554065 RepID=E1ZI21_CHLVA)

HSP 1 Score: 63.9 bits (154), Expect = 1.640e-11
Identity = 35/67 (52.24%), Postives = 46/67 (68.66%), Query Frame = 1 
Query:    1 VVVAVAFGIAMLDAFGAGYDRMVLLDATGGTNKYGYQLYSLVVVDDFREGVPVAFMLTSSQAAKEVK 201
            +V+ V+F   MLD FG    R+V +DAT G NKYGY LY+LVV D+   GVPV+FM+ SS  A+ V+
Sbjct:   34 IVMQVSFQARMLDQFGR---RLVFMDATFGVNKYGYPLYALVVQDESGRGVPVSFMVCSSDTAEVVE 97
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BLAST of jgi.p|Trimin1|137026 vs. uniprot
Match: E1Z2V7_CHLVA (MULE domain-containing protein n=1 Tax=Chlorella variabilis TaxID=554065 RepID=E1Z2V7_CHLVA)

HSP 1 Score: 63.9 bits (154), Expect = 2.430e-10
Identity = 35/67 (52.24%), Postives = 46/67 (68.66%), Query Frame = 1 
Query:    1 VVVAVAFGIAMLDAFGAGYDRMVLLDATGGTNKYGYQLYSLVVVDDFREGVPVAFMLTSSQAAKEVK 201
            +V+ V+F   MLD FG    R+V +DAT G NKYGY LY+LVV D+   GVPV+FM+ SS  A+ V+
Sbjct:   34 IVMQVSFQARMLDQFGR---RLVFMDATFGVNKYGYPLYALVVQDESGRGVPVSFMVCSSDTAEVVE 97
[Close]
BLAST of jgi.p|Trimin1|137026 vs. uniprot
Match: E1ZRN6_CHLVA (MULE domain-containing protein n=2 Tax=Chlorella variabilis TaxID=554065 RepID=E1ZRN6_CHLVA)

HSP 1 Score: 63.9 bits (154), Expect = 2.710e-10
Identity = 35/67 (52.24%), Postives = 46/67 (68.66%), Query Frame = 1 
Query:    1 VVVAVAFGIAMLDAFGAGYDRMVLLDATGGTNKYGYQLYSLVVVDDFREGVPVAFMLTSSQAAKEVK 201
            +V+ V+F   MLD FG    R+V +DAT G NKYGY LY+LVV D+   GVPV+FM+ SS  A+ V+
Sbjct:  283 IVMQVSFQARMLDQFGR---RLVFMDATFGVNKYGYPLYALVVQDESGRGVPVSFMVCSSDTAEVVE 346
[Close]
BLAST of jgi.p|Trimin1|137026 vs. uniprot
Match: E1ZBJ0_CHLVA (Chloride channel protein n=1 Tax=Chlorella variabilis TaxID=554065 RepID=E1ZBJ0_CHLVA)

HSP 1 Score: 63.9 bits (154), Expect = 2.740e-10
Identity = 35/67 (52.24%), Postives = 46/67 (68.66%), Query Frame = 1 
Query:    1 VVVAVAFGIAMLDAFGAGYDRMVLLDATGGTNKYGYQLYSLVVVDDFREGVPVAFMLTSSQAAKEVK 201
            +V+ V+F   MLD FG    R+V +DAT G NKYGY LY+LVV D+   GVPV+FM+ SS  A+ V+
Sbjct:  283 IVMQVSFQARMLDQFGR---RLVFMDATFGVNKYGYPLYALVVQDESGRGVPVSFMVCSSDTAEVVE 346
[Close]
BLAST of jgi.p|Trimin1|137026 vs. uniprot
Match: E1ZIB1_CHLVA (Uncharacterized protein n=1 Tax=Chlorella variabilis TaxID=554065 RepID=E1ZIB1_CHLVA)

HSP 1 Score: 63.9 bits (154), Expect = 2.750e-10
Identity = 35/67 (52.24%), Postives = 46/67 (68.66%), Query Frame = 1 
Query:    1 VVVAVAFGIAMLDAFGAGYDRMVLLDATGGTNKYGYQLYSLVVVDDFREGVPVAFMLTSSQAAKEVK 201
            +V+ V+F   MLD FG    R+V +DAT G NKYGY LY+LVV D+   GVPV+FM+ SS  A+ V+
Sbjct:  431 IVMQVSFQARMLDQFGR---RLVFMDATFGVNKYGYPLYALVVQDESGRGVPVSFMVCSSDTAEVVE 494
[Close]
BLAST of jgi.p|Trimin1|137026 vs. uniprot
Match: E1ZI22_CHLVA (MULE domain-containing protein n=1 Tax=Chlorella variabilis TaxID=554065 RepID=E1ZI22_CHLVA)

HSP 1 Score: 63.5 bits (153), Expect = 3.450e-10
Identity = 35/67 (52.24%), Postives = 46/67 (68.66%), Query Frame = 1 
Query:    1 VVVAVAFGIAMLDAFGAGYDRMVLLDATGGTNKYGYQLYSLVVVDDFREGVPVAFMLTSSQAAKEVK 201
            +V+ V+F   MLD FG    R+V +DAT G NKYGY LY+LVV D+   GVPV+FM+ SS  A+ V+
Sbjct:  116 IVMQVSFQARMLDQFGR---RLVFMDATFGINKYGYPLYALVVQDESGRGVPVSFMVCSSDTAEVVE 179
[Close]
BLAST of jgi.p|Trimin1|137026 vs. uniprot
Match: E1Z6L9_CHLVA (MULE domain-containing protein n=1 Tax=Chlorella variabilis TaxID=554065 RepID=E1Z6L9_CHLVA)

HSP 1 Score: 62.8 bits (151), Expect = 6.820e-10
Identity = 34/63 (53.97%), Postives = 43/63 (68.25%), Query Frame = 1 
Query:   13 VAFGIAMLDAFGAGYDRMVLLDATGGTNKYGYQLYSLVVVDDFREGVPVAFMLTSSQAAKEVK 201
            V+F   MLD FG    R+V +DAT G NKYGY LY+LVV D+   GVPV+FM+ SS  A+ V+
Sbjct:    3 VSFQARMLDQFGR---RLVFMDATFGVNKYGYPLYALVVQDESGRGVPVSFMVCSSDTAEVVE 62
[Close]
BLAST of jgi.p|Trimin1|137026 vs. uniprot
Match: E1ZEI8_CHLVA (MULE domain-containing protein n=1 Tax=Chlorella variabilis TaxID=554065 RepID=E1ZEI8_CHLVA)

HSP 1 Score: 56.6 bits (135), Expect = 1.040e-7
Identity = 27/47 (57.45%), Postives = 35/47 (74.47%), Query Frame = 1 
Query:   61 RMVLLDATGGTNKYGYQLYSLVVVDDFREGVPVAFMLTSSQAAKEVK 201
            R+V +DAT G NKYGY LY+LVV D+   GVPV+FM+ SS  A+ V+
Sbjct:  371 RLVSMDATFGVNKYGYPLYALVVQDESGRGVPVSFMVCSSDTAEVVE 417
[Close]
BLAST of jgi.p|Trimin1|137026 vs. uniprot
Match: A0A7J7PEX3_9CHLO (Uncharacterized protein n=1 Tax=Scenedesmus sp. NREL 46B-D3 TaxID=2650976 RepID=A0A7J7PEX3_9CHLO)

HSP 1 Score: 51.6 bits (122), Expect = 3.900e-7
Identity = 24/43 (55.81%), Postives = 33/43 (76.74%), Query Frame = 1 
Query:   61 RMVLLDATGGTNKYGYQLYSLVVVDDFREGVPVAFMLTSSQAA 189
            ++VLLDATGGTN+YG+  +++VVVD+F  G  VA  +TSS  A
Sbjct:    1 KVVLLDATGGTNRYGFTSFAVVVVDEFNNGCLVAPYITSSGVA 43
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|137026 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A836CK44_9STRA2.570e-3595.52MULE domain-containing protein (Fragment) n=2 Tax=... [more]
E1ZI21_CHLVA1.640e-1152.24MULE domain-containing protein n=1 Tax=Chlorella v... [more]
E1Z2V7_CHLVA2.430e-1052.24MULE domain-containing protein n=1 Tax=Chlorella v... [more]
E1ZRN6_CHLVA2.710e-1052.24MULE domain-containing protein n=2 Tax=Chlorella v... [more]
E1ZBJ0_CHLVA2.740e-1052.24Chloride channel protein n=1 Tax=Chlorella variabi... [more]
E1ZIB1_CHLVA2.750e-1052.24Uncharacterized protein n=1 Tax=Chlorella variabil... [more]
E1ZI22_CHLVA3.450e-1052.24MULE domain-containing protein n=1 Tax=Chlorella v... [more]
E1Z6L9_CHLVA6.820e-1053.97MULE domain-containing protein n=1 Tax=Chlorella v... [more]
E1ZEI8_CHLVA1.040e-757.45MULE domain-containing protein n=1 Tax=Chlorella v... [more]
A0A7J7PEX3_9CHLO3.900e-755.81Uncharacterized protein n=1 Tax=Scenedesmus sp. NR... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_114contigContig_114:121070..121270 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|137026|gw1.114.29.1
DescriptionMULE transposase domain
COG categoryS
Max annot lvl2759|Eukaryota
EggNOG OGs28MET@1|root,2QTYA@2759|Eukaryota,37XPJ@33090|Viridiplantae,34KC8@3041|Chlorophyta
Evalue4.44e-11
Seed ortholog554065.XP_005843545.1
Hectar predicted targeting categorysignal peptide
TranscriptId137348
TrackFilteredModels1
ProteinId137026
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|137026gene_15051Tribonema minus UTEX_B_3156 geneContig_114 121070..121270 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_15051_1exon_15051_1Tribonema minus UTEX_B_3156 exonContig_114 121070..121270 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_15051CDS_15051Tribonema minus UTEX_B_3156 CDSContig_114 121070..121270 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|137026Trimin1|137026|gw1.114.29.1Tribonema minus UTEX_B_3156 polypeptideContig_114 121070..121270 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_15051 ID=mRNA_15051|Name=jgi.p|Trimin1|137026|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=201bp|location=Sequence derived from alignment at Contig_114:121070..121270- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
GTCGTTGTGGCTGTTGCATTTGGCATCGCCATGCTTGATGCATTTGGAGC
CGGATATGACCGCATGGTGCTGCTGGATGCAACGGGGGGGACCAACAAGT
ATGGCTACCAGCTGTACAGCCTGGTGGTGGTGGATGACTTCAGGGAAGGC
GTACCTGTCGCATTCATGCTCACCTCGAGCCAGGCAGCCAAGGAGGTCAA
G
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protein sequence of jgi.p|Trimin1|137026

>Trimin1|137026|gw1.114.29.1 ID=Trimin1|137026|gw1.114.29.1|Name=jgi.p|Trimin1|137026|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=67bp
VVVAVAFGIAMLDAFGAGYDRMVLLDATGGTNKYGYQLYSLVVVDDFREG
VPVAFMLTSSQAAKEVK
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mRNA from alignment at Contig_114:121070..121270-

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_15051 ID=mRNA_15051|Name=jgi.p|Trimin1|137026|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=201bp|location=Sequence derived from alignment at Contig_114:121070..121270- (Tribonema minus UTEX_B_3156 )
GTCGTTGTGGCTGTTGCATTTGGCATCGCCATGCTTGATGCATTTGGAGC
CGGATATGACCGCATGGTGCTGCTGGATGCAACGGGGGGGACCAACAAGT
ATGGCTACCAGCTGTACAGCCTGGTGGTGGTGGATGACTTCAGGGAAGGC
GTACCTGTCGCATTCATGCTCACCTCGAGCCAGGCAGCCAAGGAGGTCAA
G
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Coding sequence (CDS) from alignment at Contig_114:121070..121270-

>mRNA_15051 ID=mRNA_15051|Name=jgi.p|Trimin1|137026|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=201bp|location=Sequence derived from alignment at Contig_114:121070..121270- (Tribonema minus UTEX_B_3156 )
GTCGTTGTGGCTGTTGCATTTGGCATCGCCATGCTTGATGCATTTGGAGC
CGGATATGACCGCATGGTGCTGCTGGATGCAACGGGGGGGACCAACAAGT
ATGGCTACCAGCTGTACAGCCTGGTGGTGGTGGATGACTTCAGGGAAGGC
GTACCTGTCGCATTCATGCTCACCTCGAGCCAGGCAGCCAAGGAGGTCAA
G
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