mRNA_15015 (mRNA) Tribonema minus UTEX_B_3156
Overview
Homology
BLAST of jgi.p|Trimin1|177508 vs. uniprot
Match: A0A835ZB49_9STRA (Ubiquinone biosynthesis protein COQ7-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZB49_9STRA) HSP 1 Score: 453 bits (1166), Expect = 1.100e-160 Identity = 243/243 (100.00%), Postives = 243/243 (100.00%), Query Frame = 1 Query: 1 MTSLPSRPQAQAAAAPTSEPAVFARFDFNWQALFAERISWLTQPNVVADLRSDHAGETGAVYIYLGAAWAMALSPQRYTPGAHSFVTEHCATEEGHLALFDRLLPREHHSKLLLAWKAAGFALGALPTLVGEAALFCTVESVETFVEEHYNEHIVPMEREGAYPELVRLLRHCRDDEVHHKNDAAARWGAPAATASGSGXXXXXXXXXXXXXXXXSARPWYGRAWAAVVGRGSKAAVAVCRRV 729 MTSLPSRPQAQAAAAPTSEPAVFARFDFNWQALFAERISWLTQPNVVADLRSDHAGETGAVYIYLGAAWAMALSPQRYTPGAHSFVTEHCATEEGHLALFDRLLPREHHSKLLLAWKAAGFALGALPTLVGEAALFCTVESVETFVEEHYNEHIVPMEREGAYPELVRLLRHCRDDEVHHKNDAAARWGAPAATASGSGXXXXXXXXXXXXXXXXSARPWYGRAWAAVVGRGSKAAVAVCRRV Sbjct: 1 MTSLPSRPQAQAAAAPTSEPAVFARFDFNWQALFAERISWLTQPNVVADLRSDHAGETGAVYIYLGAAWAMALSPQRYTPGAHSFVTEHCATEEGHLALFDRLLPREHHSKLLLAWKAAGFALGALPTLVGEAALFCTVESVETFVEEHYNEHIVPMEREGAYPELVRLLRHCRDDEVHHKNDAAARWGAPAATASGSGXXXXXXXXXXXXXXXXSARPWYGRAWAAVVGRGSKAAVAVCRRV 243
BLAST of jgi.p|Trimin1|177508 vs. uniprot
Match: A0A7S3Y216_HETAK (Hypothetical protein (Fragment) n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y216_HETAK) HSP 1 Score: 201 bits (512), Expect = 6.450e-61 Identity = 107/173 (61.85%), Postives = 122/173 (70.52%), Query Frame = 1 Query: 52 SEPAVFARFDFNWQALFAE-RISWLTQPNVVADLRSDHAGETGAVYIYLGAAWAMALSPQRYTPGAHSFVTEHCATEEGHLALFDRLLPREHHSKLLLAWKAAGFALGALPTLVGEAALFCTVESVETFVEEHYNEHIVPMEREGAYPELVRLLRHCRDDEVHHKNDAAARWG 567 S+P A F+W AL E R W P VA LRSDHAGETGAV+IY GAAWA+A TP A FV EH ATE GHLAL +RLL S+LL W+AAGF LGALP LV EAALFCTVE+VETFVEEHY EH++P+E G PEL RLLR C ++EVHH++DAA RWG Sbjct: 81 SDPPPNAEGLFDWAALEREKREVWGADPGTVAALRSDHAGETGAVWIYRGAAWALARRSGG-TPAARRFVAEHLATEAGHLALMERLLEEGQRSRLLPLWRAAGFGLGALPALVSEAALFCTVEAVETFVEEHYLEHLLPLEAGGRCPELCRLLRRCCEEEVHHRDDAARRWG 252
BLAST of jgi.p|Trimin1|177508 vs. uniprot
Match: W7TH15_9STRA (Ubiquinone biosynthesis protein coq7 n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TH15_9STRA) HSP 1 Score: 180 bits (456), Expect = 6.100e-52 Identity = 109/223 (48.88%), Postives = 133/223 (59.64%), Query Frame = 1 Query: 82 FNWQALFAERISWLT-----QPNVVADLRSDHAGETGAVYIYLGAAWAMALSPQ-RYTPGAHSFVTEHCATEEGHLALFDRLLPREHHSKLLLAWKAAGFALGALPTLVG-EAALFCTVESVETFVEEHYNEHIVPMEREGAYPELVRLLRHCRDDEVHHKNDAAARWGAPAATASGSGXXXXXXXXXXXXXXXXSARPWYGRAWAAVVGRGSKAAVAVCRRV 729 F+W L E+ W + +V DLRSDHAGETGAVYIY GA AM R++ + +FV H ATE HLA F+RLL SKLL W+ +G+ LG PTL+G E+ALF TVE+VETFVE HY E I P++ G +PEL++LLRHC D+EVHHK DA ARW G G RP R WA VVG GS+AAVAVCR++ Sbjct: 111 FDWIGLEEEKKIWGDFESNGEAVLVQDLRSDHAGETGAVYIYAGAQAAMKWGGGGRFSAESRAFVQTHHATESEHLAYFERLLDPGMKSKLLPFWRISGWCLGFFPTLLGGESALFLTVEAVETFVEAHYQEQIYPLQCSGRFPELLKLLRHCCDEEVHHKEDAQARW------LQGRGFGEVED------------RPRLARLWAWVVGTGSRAAVAVCRKI 315
BLAST of jgi.p|Trimin1|177508 vs. uniprot
Match: A0A5A8C9Y3_CAFRO (Uncharacterized protein n=1 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8C9Y3_CAFRO) HSP 1 Score: 149 bits (377), Expect = 1.650e-41 Identity = 97/219 (44.29%), Postives = 124/219 (56.62%), Query Frame = 1 Query: 136 VVADLRSDHAGETGAVYIYLGAAWAMALSPQRYTPGAHSFVTEHCATEEGHLALFDRLLPREHHSKLLLAWKAAGFALGALPTLVGEAALFCTVESVETFVEEHYNEHIVPM------------ER-----EGAYPELVRLLRHCRDDEVHHKNDAAARWGAPAATASGSGXXXXXXXXXXXXXXXXSARPWYG----RAWAAVVGRGSKAAVAVCRRV 729 ++ADLRSDHAGETGAV+IY GAA A L + ++ A FV +H +E+ HL FD LL +H +KLL W+A GF LG P +VGEAALF TVE+VETFVEEHY++ + + ER +G ELVR++ CRDDEV HKNDAA+R G+P A+P + RAWA V+ GS+ AV R V Sbjct: 7 LLADLRSDHAGETGAVWIYKGAAAAQRL--RGHSAEAREFVGQHLESEQQHLDFFDDLLEAQHTTKLLPLWRACGFVLGFAPAMVGEAALFATVEAVETFVEEHYDDQLAYLRSNGEMRSGGHAERHAEGSDGGVAELVRVIAACRDDEVSHKNDAASR-GSPR-----------------------EAQPVFVAAAVRAWARVIDAGSRLAVVASRAV 199
BLAST of jgi.p|Trimin1|177508 vs. uniprot
Match: A0A7S4EU99_CHRCT (Hypothetical protein n=1 Tax=Chrysotila carterae TaxID=13221 RepID=A0A7S4EU99_CHRCT) HSP 1 Score: 149 bits (376), Expect = 1.290e-39 Identity = 94/221 (42.53%), Postives = 118/221 (53.39%), Query Frame = 1 Query: 79 DFNWQALFAERISWLTQPNVVADLRSDHAGETGAVYIYLGAAWAMALSPQRYT----PGAHSFVTEHCATEEGHLALFDRLLPREHHSKLLLAWKAAGFALGALPTLVGEAALFCTVESVETFVEEHYNEHIVPMEREGAYPELVRLLRHCRDDEVHHKNDAAARWGAPAATASGSGXXXXXXXXXXXXXXXXSARPWYGRAWAAVVGRGSKAAVAVCRRV 729 + +W+ A R WL +L S+ AGETGAVYIY GAA A++L + P FV EH E HL LF+ LLP+ ++LL W+ G+ LG P LV AL+ TV++VETFVEEHY E IVP+E++G PELV+LLR C DEVHHK+DAA R P RAW AVV +GS A V RR+ Sbjct: 167 EVSWEQPHA-RWHWLD-----GELSSNIAGETGAVYIYRGAASALSLRESLLSRAIEPDVSRFVHEHMEAEAAHLELFELLLPQSKRTRLLPVWRLFGWVLGFAPALVSPRALYLTVQAVETFVEEHYMEQIVPLEQQGRCPELVKLLRACCADEVHHKDDAADRAQGPPGLLE--------------------------RAWMAVVRKGSAVAAEVARRI 355
BLAST of jgi.p|Trimin1|177508 vs. uniprot
Match: A0A7S3G368_9EUKA (Hypothetical protein n=1 Tax=Palpitomonas bilix TaxID=652834 RepID=A0A7S3G368_9EUKA) HSP 1 Score: 145 bits (365), Expect = 5.930e-39 Identity = 82/196 (41.84%), Postives = 111/196 (56.63%), Query Frame = 1 Query: 136 VVADLRSDHAGETGAVYIYLGAAWAMALSPQRYTPGAHSFVTEHCATEEGHLALFDRLLPREHHSKLLLAWKAAGFALGALPTLVGEAALFCTVESVETFVEEHYNEHIVPMEREGAYPELVRLLRHCRDDEVHHKNDAAARWGAPAATASGSGXXXXXXXXXXXXXXXXSARPWYGRAWAAVVGRGSKAAVAVCR 723 +++DLR+DHAGE GAV IY GA P + A +FV EH E HL F LLP + LL WK AG+ LGALP+L+ + ALF T+++VE+FVEEHYNE I P+++ G YP + +LL C +DEVHH++DA R +P+++ S W A+VG GSK AV + R Sbjct: 88 LLSDLRTDHAGEYGAVAIYEGAL------PFVKSAAAKAFVKEHIDNERQHLRYFTHLLPPAERTSLLPLWKLAGWTLGALPSLISDRALFITIDAVESFVEEHYNEQINPLKKSGKYPAIRKLLEECCEDEVHHRDDARLRHSSPSSSPPPSPLLQGIEA-----------------TWRAIVGGGSKGAVTLSR 260
BLAST of jgi.p|Trimin1|177508 vs. uniprot
Match: UPI001FCC98BE (demethoxyubiquinone hydroxylase family protein n=3 Tax=unclassified Roseomonas TaxID=2617492 RepID=UPI001FCC98BE) HSP 1 Score: 142 bits (358), Expect = 7.570e-39 Identity = 86/201 (42.79%), Postives = 109/201 (54.23%), Query Frame = 1 Query: 136 VVADLRSDHAGETGAVYIYLGAAWAMALSPQRYTPGAHSFVTEHCATEEGHLALFDRLLPREHHSKLLLAWKAAGFALGALPTLVGEAALFCTVESVETFVEEHYNEHIVPMEREGAYPELVRLLRHCRDDEVHHKNDAAARWGAPAATASGSGXXXXXXXXXXXXXXXXSARPWYG---RAWAAVVGRGSKAAVAVCRRV 729 +V +LRSDHAGETGAV IY G +A S P F T H ATE+GHL L + LLP S+LL W+ AG+ GALP L G A+F TV++VETFV+ HY + EG +P++ LL HCR++EVHH+++A PA YG RAWA VVG GS AAVA +R+ Sbjct: 18 LVGELRSDHAGETGAVRIYDG---ILAFSRD---PAVRDFATRHRATEQGHLDLLEGLLPPADRSRLLPIWRVAGWLTGALPALFGPRAVFATVDAVETFVDHHYRAQTDRLAAEGIFPDVHALLEHCREEEVHHRDEAREAGEGPA----------------------------YGPVLRAWAWVVGSGSAAAVAAAKRI 184
BLAST of jgi.p|Trimin1|177508 vs. uniprot
Match: A0A7S0D6H7_9EUKA (Hypothetical protein n=1 Tax=Amorphochlora amoebiformis TaxID=1561963 RepID=A0A7S0D6H7_9EUKA) HSP 1 Score: 146 bits (369), Expect = 8.340e-39 Identity = 95/239 (39.75%), Postives = 124/239 (51.88%), Query Frame = 1 Query: 82 FNWQALFAERIS---WLTQPNVVADLRSDHAGETGAVYIYLGAAWAMALSPQR----YTPG--------------AHSFVTEHCATEEGHLALFDRLLPREHHSKLLLAWKAAGFALGALPTLVGEAA--LFCTVESVETFVEEHYNEHIVPMEREGAYPELVRLLRHCRDDEVHHKNDAAARWGAPAATASGSGXXXXXXXXXXXXXXXXSARPWYGRAWAAVVGRGSKAAVAVCRRV 729 F+W+A+ E+ WL + +LRSDHAGETGAV+IY GA WAM L Y G A FV H TE HL L +R++ ++ SK L WK A F LGA+PTL+G L+ TV+ VETFVE+HY HI+P+E +G PELVRLLR C ++EV H+ DAA G T + + RAW V+ GS AV+V +R+ Sbjct: 119 FDWEAIDKEKTHGPHWLDE-----ELRSDHAGETGAVWIYKGAIWAMQLRSNSANALYQLGVDMGCPYRVLEKQEAWQFVNHHIRTEAKHLELMERIVDLDNRSKALPIWKLAAFVLGAMPTLLGPTPKWLYYTVDGVETFVEQHYLNHIIPLEVDGKCPELVRLLRMCMEEEVRHREDAAGLSGIETCTRV--------------------PKSFVVRAWFWVLRSGSSLAVSVAKRI 332
BLAST of jgi.p|Trimin1|177508 vs. uniprot
Match: UPI0010C0B480 (demethoxyubiquinone hydroxylase family protein n=3 Tax=Roseomonas TaxID=125216 RepID=UPI0010C0B480) HSP 1 Score: 140 bits (354), Expect = 3.020e-38 Identity = 86/198 (43.43%), Postives = 107/198 (54.04%), Query Frame = 1 Query: 136 VVADLRSDHAGETGAVYIYLGAAWAMALSPQRYTPGAHSFVTEHCATEEGHLALFDRLLPREHHSKLLLAWKAAGFALGALPTLVGEAALFCTVESVETFVEEHYNEHIVPMEREGAYPELVRLLRHCRDDEVHHKNDAAARWGAPAATASGSGXXXXXXXXXXXXXXXXSARPWYGRAWAAVVGRGSKAAVAVCRRV 729 +V +LRSDHAGETGAV IY G +A S P F H ATE+GHL L + LLPR S+LL W+ AG+ GALP L G A+F TV++VETFV+ HY +ERE PE+ LL CR++EVHH+++A PA G RAWA VVG GS AAVA +R+ Sbjct: 18 LVGELRSDHAGETGAVRIYDG---ILAFSRD---PAVRDFAERHRATEQGHLDLLEDLLPRAERSRLLPIWRVAGWLTGALPALFGPRAVFATVDAVETFVDHHYRAQTERLERERILPEIHALLERCREEEVHHRDEAREAGAGPA-----HGPVL--------------------RAWAWVVGSGSAAAVAAAKRI 184
BLAST of jgi.p|Trimin1|177508 vs. uniprot
Match: A0A7S3QD80_9STRA (Hypothetical protein n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3QD80_9STRA) HSP 1 Score: 143 bits (361), Expect = 4.620e-38 Identity = 74/142 (52.11%), Postives = 98/142 (69.01%), Query Frame = 1 Query: 145 DLRSDHAGETGAVYIYLGAAWAMALSPQRYT--PGAHSFVTEHCATEEGHLALFDRLLPREHHSKLLLAWKAAGFALGALPTLVGEA-ALFCTVESVETFVEEHYNEHIVPMEREGAYPELVRLLRHCRDDEVHHKNDAAAR 561 +L S+ AGETGAV+IY GA AM + P ++ A F EH A E HL +F ++P H++LL W+AAG+ LG PTL+G + AL+ TVESVETFVEEH+ E IVP++++ + PEL+RLL HC +DEVHHK DA R Sbjct: 105 ELSSNVAGETGAVHIYKGALAAMKVRPLSFSCSSDAADFAMEHVANESAHLRMFQAVVPHGKHTRLLPMWRAAGWVLGFFPTLLGGSKALYVTVESVETFVEEHFQEQIVPLKKQDSCPELLRLLEHCCEDEVHHKEDAERR 246 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|177508 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_15015 ID=mRNA_15015|Name=jgi.p|Trimin1|177508|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=732bp|location=Sequence derived from alignment at Contig_152:162433..163779+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. ATGACGTCACTTCCGTCGAGACCGCAAGCGCAGGCGGCAGCAGCGCCAACback to top protein sequence of jgi.p|Trimin1|177508 >Trimin1|177508|e_gw1.152.14.1 ID=Trimin1|177508|e_gw1.152.14.1|Name=jgi.p|Trimin1|177508|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=244bp MTSLPSRPQAQAAAAPTSEPAVFARFDFNWQALFAERISWLTQPNVVADLback to top mRNA from alignment at Contig_152:162433..163779+ Legend: exonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_15015 ID=mRNA_15015|Name=jgi.p|Trimin1|177508|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1347bp|location=Sequence derived from alignment at Contig_152:162433..163779+ (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_152:162433..163779+ >mRNA_15015 ID=mRNA_15015|Name=jgi.p|Trimin1|177508|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=732bp|location=Sequence derived from alignment at Contig_152:162433..163779+ (Tribonema minus UTEX_B_3156 )back to top |