mRNA_15013 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	jgi.p\|Trimin1\|177469
Unique Name	mRNA_15013
Type	mRNA
Organism	Tribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )

Homology

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BLAST of jgi.p|Trimin1|177469 vs. uniprot
Match: A0A835Z835_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z835_9STRA)

HSP 1 Score: 176 bits (445), Expect = 1.630e-44
Identity = 563/563 (100.00%), Postives = 563/563 (100.00%), Query Frame = 1

Query:    1 MTVLPDSIAAFVALTELDLSMASKLRWLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDTHFKALPDCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXILDARSTIFLDQLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTLRLYNVPCASXXXXXXXXXXXXXXXLDASKTLTTLPVTFGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMCGKVAAALTELTXXXXXXXXXXXXGLNSLTKLQTXXXXXXXXXXXXXXSIDALXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRALTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQGKLQLLLRRFAVGPWRVTPRPGWERGRAGNGNSLHIEVWPGTPMAARRLFRSYP 1689
            MTVLPDSIAAFVALTELDLSMASKLRWLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDTHFKALPDCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXILDARSTIFLDQLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTLRLYNVPCASXXXXXXXXXXXXXXXLDASKTLTTLPVTFGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMCGKVAAALTELTXXXXXXXXXXXXGLNSLTKLQTXXXXXXXXXXXXXXSIDALXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRALTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQGKLQLLLRRFAVGPWRVTPRPGWERGRAGNGNSLHIEVWPGTPMAARRLFRSYP
Sbjct:    1 MTVLPDSIAAFVALTELDLSMASKLRWLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDTHFKALPDCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXILDARSTIFLDQLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTLRLYNVPCASXXXXXXXXXXXXXXXLDASKTLTTLPVTFGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMCGKVAAALTELTXXXXXXXXXXXXGLNSLTKLQTXXXXXXXXXXXXXXSIDALXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRALTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQGKLQLLLRRFAVGPWRVTPRPGWERGRAGNGNSLHIEVWPGTPMAARRLFRSYP 563

The following BLAST results are available for this feature:

BLAST of jgi.p|Trimin1|177469 vs. uniprot

BLAST of jgi.p|Trimin1|177469 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1


Match Name	E-value	Identity	Description
A0A835Z835_9STRA	1.630e-44	100.00	Uncharacterized protein n=1 Tax=Tribonema minus Ta...	[more]

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Contig_152	contig	Contig_152:153587..155278 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
OGS1.0 of Tribonema minus UTEX_B_3156	2021-06-17

Properties


Property Name	Value
ProteomeId	Trimin1\|177469\|e_gw1.152.29.1
Hectar predicted targeting category	other localisation
TranscriptId	177791
Track	FilteredModels1
ProteinId	177469

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
jgi.p\|Trimin1\|177469	gene_15013	Tribonema minus UTEX_B_3156	gene	Contig_152 153587..155278 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
exon_15013_1	exon_15013_1	Tribonema minus UTEX_B_3156	exon	Contig_152 153587..155278 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
CDS_15013	CDS_15013	Tribonema minus UTEX_B_3156	CDS	Contig_152 153587..155278 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
jgi.p\|Trimin1\|177469	Trimin1\|177469\|e_gw1.152.29.1	Tribonema minus UTEX_B_3156	polypeptide	Contig_152 153587..155278 -

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Contig_152:153587..155278-
coding sequence from alignment at Contig_152:153587..155278-

spliced messenger RNA

>mRNA_15013 ID=mRNA_15013|Name=jgi.p|Trimin1|177469|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1692bp|location=Sequence derived from alignment at Contig_152:153587..155278- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGACGGTGCTGCCGGACAGCATCGCCGCGTTTGTAGCACTCACTGAATT
GGACCTGAGCATGGCCTCAAAGCTGAGATGGCTGCCGAGCACCATTGGCA
ACCTGTCCGCGCTCACTGTGCTCAACTTATGCAGCTGTAGTGAGCTCAGG
AGCTTGCCGGATTCGGTCGGCGATCTGTCGGCGCTCACAGCGCTCAGCAT
CGGCTCTTGCCATGGGCTGACCAGCTCGCCGGACAGCATCTGCGACCTGG
CGCAGCTGACGAGCCTCAACTTGGGCGACACGCACTTTAAGGCTCTGCCG
GATTGCTTCGGTGGTCTGGCAGCGCTGACAGAGCTTGACATAGGCGGCGC
ACTCTTGAGGTCCCTGCCTGAGAGCATCGGCAACCTGGCGCGACTGCAAA
TACTCGATGCGAGGAGCACCATCTTTCTAGACCAGCTGCCAAAGCGGTTT
GGCGAGTTGGCAGCACTCACCAGGCTTGAACTGTGCTGCTCCTTTTTCAC
CAGCCTACCAGACTGCATTGTCCGCTTGACAGCACTGCAGACGCTGAGGT
TGTACAACGTGCCCTGCGCAAGCCTGCCGGACAGCATCTGCGACCTAGCT
GCGCTGACGACGCTGAGGCTCGACGCCAGCAAGACACTCACAACTCTCCC
GGTCACATTCGGTCAACTGCACGCCTTGGGTCAGCTCGACTTGAGCGACT
GCACATCGCTGACTCTGTTGCCAGACGGCATCAGCGATCTCGCAGCACTG
ACAGTGCTCAACTTGAGCTTCTGCGCGCAGCTTACAGGGCTACCAGACAT
GTGCGGCAAGGTGGCAGCAGCGCTCACGGAGCTGACCCTGCGCGGGTGCC
AGCGGCTCTCTCACTTGCCGGACGGCCTCAACAGCCTCACGAAGCTACAG
ACGCTCACGCTGCGCGACTGCAGAGCGCTGACGTGCCTGCCAGACAGCAT
CGATGCGCTGGCGGCTCTGACGGCGCTCGACATGGAGGGGTCCGAGCAGC
TGCAGCGGCTGCCCGATACCATCGGCCAGCTGGCGGCGCTGACATCTCTC
AACATCAGCGGCTGTGCACGGCTCGCGCACCTGCCGGATGCAGTCGGCAC
CTTGCAGGCGCTCAAGTGCCTTCATGCAGGCAATTGCAGAGCACTGACGC
GCCTGCCGGACAGCATTGCCAGCCTTACGGCGCTGACCTCCCTCAATCTC
CGCAGCTTCGAGCAGCTGGCCACGCTGCCTGACGCCGTGGGGAGCCTGGT
TTCCTTGACGTCGCTTGACGTCAGCGCTTGCCGACGCCTCACAAGCTTGC
CGGACACGATCGGCGCTCTGTCGGCGCTGCTGCAGCTCGACATCAGTTGG
TGCGAGCGGCTTGTCAGCCTGCCGGACGCCATAGGCGGGCTCACGGCGCT
GGAAGAGCTCGATGCGACTGGCTGCAAGCAGCTCGCGCGCCTGCCAGACA
CGTTGTGCGACCTGGGCGCGCTGACTTTCCTCGACCTGAGCCATTGCGAG
CGGCTCACGGCGCTGCCGGACACGCAGGGCAAGCTGCAGCTGCTGCTCAG
GAGGTTTGCGGTGGGTCCGTGGCGCGTGACGCCGAGGCCAGGCTGGGAGC
GCGGGAGGGCAGGCAATGGCAATTCGCTCCACATAGAGGTATGGCCAGGG
ACCCCAATGGCTGCCCGCAGATTGTTCAGGAGCTACCCCTGA

protein sequence of jgi.p|Trimin1|177469

>Trimin1|177469|e_gw1.152.29.1 ID=Trimin1|177469|e_gw1.152.29.1|Name=jgi.p|Trimin1|177469|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=564bp
MTVLPDSIAAFVALTELDLSMASKLRWLPSTIGNLSALTVLNLCSCSELR
SLPDSVGDLSALTALSIGSCHGLTSSPDSICDLAQLTSLNLGDTHFKALP
DCFGGLAALTELDIGGALLRSLPESIGNLARLQILDARSTIFLDQLPKRF
GELAALTRLELCCSFFTSLPDCIVRLTALQTLRLYNVPCASLPDSICDLA
ALTTLRLDASKTLTTLPVTFGQLHALGQLDLSDCTSLTLLPDGISDLAAL
TVLNLSFCAQLTGLPDMCGKVAAALTELTLRGCQRLSHLPDGLNSLTKLQ
TLTLRDCRALTCLPDSIDALAALTALDMEGSEQLQRLPDTIGQLAALTSL
NISGCARLAHLPDAVGTLQALKCLHAGNCRALTRLPDSIASLTALTSLNL
RSFEQLATLPDAVGSLVSLTSLDVSACRRLTSLPDTIGALSALLQLDISW
CERLVSLPDAIGGLTALEELDATGCKQLARLPDTLCDLGALTFLDLSHCE
RLTALPDTQGKLQLLLRRFAVGPWRVTPRPGWERGRAGNGNSLHIEVWPG
TPMAARRLFRSYP*

mRNA from alignment at Contig_152:153587..155278-

Legend: exonpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_15013 ID=mRNA_15013|Name=jgi.p|Trimin1|177469|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1692bp|location=Sequence derived from alignment at Contig_152:153587..155278- (Tribonema minus UTEX_B_3156 )
ATGACGGTGCTGCCGGACAGCATCGCCGCGTTTGTAGCACTCACTGAATT
GGACCTGAGCATGGCCTCAAAGCTGAGATGGCTGCCGAGCACCATTGGCA
ACCTGTCCGCGCTCACTGTGCTCAACTTATGCAGCTGTAGTGAGCTCAGG
AGCTTGCCGGATTCGGTCGGCGATCTGTCGGCGCTCACAGCGCTCAGCAT
CGGCTCTTGCCATGGGCTGACCAGCTCGCCGGACAGCATCTGCGACCTGG
CGCAGCTGACGAGCCTCAACTTGGGCGACACGCACTTTAAGGCTCTGCCG
GATTGCTTCGGTGGTCTGGCAGCGCTGACAGAGCTTGACATAGGCGGCGC
ACTCTTGAGGTCCCTGCCTGAGAGCATCGGCAACCTGGCGCGACTGCAAA
TACTCGATGCGAGGAGCACCATCTTTCTAGACCAGCTGCCAAAGCGGTTT
GGCGAGTTGGCAGCACTCACCAGGCTTGAACTGTGCTGCTCCTTTTTCAC
CAGCCTACCAGACTGCATTGTCCGCTTGACAGCACTGCAGACGCTGAGGT
TGTACAACGTGCCCTGCGCAAGCCTGCCGGACAGCATCTGCGACCTAGCT
GCGCTGACGACGCTGAGGCTCGACGCCAGCAAGACACTCACAACTCTCCC
GGTCACATTCGGTCAACTGCACGCCTTGGGTCAGCTCGACTTGAGCGACT
GCACATCGCTGACTCTGTTGCCAGACGGCATCAGCGATCTCGCAGCACTG
ACAGTGCTCAACTTGAGCTTCTGCGCGCAGCTTACAGGGCTACCAGACAT
GTGCGGCAAGGTGGCAGCAGCGCTCACGGAGCTGACCCTGCGCGGGTGCC
AGCGGCTCTCTCACTTGCCGGACGGCCTCAACAGCCTCACGAAGCTACAG
ACGCTCACGCTGCGCGACTGCAGAGCGCTGACGTGCCTGCCAGACAGCAT
CGATGCGCTGGCGGCTCTGACGGCGCTCGACATGGAGGGGTCCGAGCAGC
TGCAGCGGCTGCCCGATACCATCGGCCAGCTGGCGGCGCTGACATCTCTC
AACATCAGCGGCTGTGCACGGCTCGCGCACCTGCCGGATGCAGTCGGCAC
CTTGCAGGCGCTCAAGTGCCTTCATGCAGGCAATTGCAGAGCACTGACGC
GCCTGCCGGACAGCATTGCCAGCCTTACGGCGCTGACCTCCCTCAATCTC
CGCAGCTTCGAGCAGCTGGCCACGCTGCCTGACGCCGTGGGGAGCCTGGT
TTCCTTGACGTCGCTTGACGTCAGCGCTTGCCGACGCCTCACAAGCTTGC
CGGACACGATCGGCGCTCTGTCGGCGCTGCTGCAGCTCGACATCAGTTGG
TGCGAGCGGCTTGTCAGCCTGCCGGACGCCATAGGCGGGCTCACGGCGCT
GGAAGAGCTCGATGCGACTGGCTGCAAGCAGCTCGCGCGCCTGCCAGACA
CGTTGTGCGACCTGGGCGCGCTGACTTTCCTCGACCTGAGCCATTGCGAG
CGGCTCACGGCGCTGCCGGACACGCAGGGCAAGCTGCAGCTGCTGCTCAG
GAGGTTTGCGGTGGGTCCGTGGCGCGTGACGCCGAGGCCAGGCTGGGAGC
GCGGGAGGGCAGGCAATGGCAATTCGCTCCACATAGAGGTATGGCCAGGG
ACCCCAATGGCTGCCCGCAGATTGTTCAGGAGCTACCCCTGA

Coding sequence (CDS) from alignment at Contig_152:153587..155278-

>mRNA_15013 ID=mRNA_15013|Name=jgi.p|Trimin1|177469|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=1692bp|location=Sequence derived from alignment at Contig_152:153587..155278- (Tribonema minus UTEX_B_3156 )
ATGACGGTGCTGCCGGACAGCATCGCCGCGTTTGTAGCACTCACTGAATT
GGACCTGAGCATGGCCTCAAAGCTGAGATGGCTGCCGAGCACCATTGGCA
ACCTGTCCGCGCTCACTGTGCTCAACTTATGCAGCTGTAGTGAGCTCAGG
AGCTTGCCGGATTCGGTCGGCGATCTGTCGGCGCTCACAGCGCTCAGCAT
CGGCTCTTGCCATGGGCTGACCAGCTCGCCGGACAGCATCTGCGACCTGG
CGCAGCTGACGAGCCTCAACTTGGGCGACACGCACTTTAAGGCTCTGCCG
GATTGCTTCGGTGGTCTGGCAGCGCTGACAGAGCTTGACATAGGCGGCGC
ACTCTTGAGGTCCCTGCCTGAGAGCATCGGCAACCTGGCGCGACTGCAAA
TACTCGATGCGAGGAGCACCATCTTTCTAGACCAGCTGCCAAAGCGGTTT
GGCGAGTTGGCAGCACTCACCAGGCTTGAACTGTGCTGCTCCTTTTTCAC
CAGCCTACCAGACTGCATTGTCCGCTTGACAGCACTGCAGACGCTGAGGT
TGTACAACGTGCCCTGCGCAAGCCTGCCGGACAGCATCTGCGACCTAGCT
GCGCTGACGACGCTGAGGCTCGACGCCAGCAAGACACTCACAACTCTCCC
GGTCACATTCGGTCAACTGCACGCCTTGGGTCAGCTCGACTTGAGCGACT
GCACATCGCTGACTCTGTTGCCAGACGGCATCAGCGATCTCGCAGCACTG
ACAGTGCTCAACTTGAGCTTCTGCGCGCAGCTTACAGGGCTACCAGACAT
GTGCGGCAAGGTGGCAGCAGCGCTCACGGAGCTGACCCTGCGCGGGTGCC
AGCGGCTCTCTCACTTGCCGGACGGCCTCAACAGCCTCACGAAGCTACAG
ACGCTCACGCTGCGCGACTGCAGAGCGCTGACGTGCCTGCCAGACAGCAT
CGATGCGCTGGCGGCTCTGACGGCGCTCGACATGGAGGGGTCCGAGCAGC
TGCAGCGGCTGCCCGATACCATCGGCCAGCTGGCGGCGCTGACATCTCTC
AACATCAGCGGCTGTGCACGGCTCGCGCACCTGCCGGATGCAGTCGGCAC
CTTGCAGGCGCTCAAGTGCCTTCATGCAGGCAATTGCAGAGCACTGACGC
GCCTGCCGGACAGCATTGCCAGCCTTACGGCGCTGACCTCCCTCAATCTC
CGCAGCTTCGAGCAGCTGGCCACGCTGCCTGACGCCGTGGGGAGCCTGGT
TTCCTTGACGTCGCTTGACGTCAGCGCTTGCCGACGCCTCACAAGCTTGC
CGGACACGATCGGCGCTCTGTCGGCGCTGCTGCAGCTCGACATCAGTTGG
TGCGAGCGGCTTGTCAGCCTGCCGGACGCCATAGGCGGGCTCACGGCGCT
GGAAGAGCTCGATGCGACTGGCTGCAAGCAGCTCGCGCGCCTGCCAGACA
CGTTGTGCGACCTGGGCGCGCTGACTTTCCTCGACCTGAGCCATTGCGAG
CGGCTCACGGCGCTGCCGGACACGCAGGGCAAGCTGCAGCTGCTGCTCAG
GAGGTTTGCGGTGGGTCCGTGGCGCGTGACGCCGAGGCCAGGCTGGGAGC
GCGGGAGGGCAGGCAATGGCAATTCGCTCCACATAGAGGTATGGCCAGGG
ACCCCAATGGCTGCCCGCAGATTGTTCAGGAGCTACCCCTGA