mRNA_14999 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_14999 ID=mRNA_14999|Name=jgi.p|Trimin1|177496|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1839bp|location=Sequence derived from alignment at Contig_152:72998..78789+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGACGGCGCTGCCGGACAGCATCGGCGCCTTGCCAGCACTCACCCACCT
GAACGTGAACAGCCTCTCAGAGCTGACAAGTCTGCCGAGCACCATCGGCA
GCCTGTCCGCACTCACTGTGCTCAACTTGAGCGAGTGCAGGCAGCTCAAG
AGCCTGCCGGATTCGATCGGCGATCTGGCTGTGCTCACGGTTCTCAACCT
CTGGAACTGTGCTGATCTCACCAGCCTGCCGGACCGCATCTGTGACCTGG
CGGCGCTGACGAGGCTCGACTTGGGCGGCACGGTGGACTTGCACGACTGC
AGATCGCTGACGTGCCTGCCGGACAGCATCGGCGCGCTGGCGGCTCTGAC
GGCGCTCGACATGGAGGGGTGCGAGCAGCTGCAGCGGCTGCCCAATACCA
TCGGGCAGCTGGCGGCGCTGACGTCTCTCAATGTGAGCGGGTGCGCGCTG
CTCACGCACCTGCCGGATGCAATCGGCACCCTGCAGGCGCTTACATGCCT
CCAAGCGCGCAACTGCGGAGCACTGACGCAGCTGCCGGACAGCATTGCCG
GCCTGACGGCGCTGACCAACCTCAACCTCAGCCACTGCGAGCAGCTGACC
AGCCTGCCTGACGCCGTGGGGAGTCTGGCGTCGTTGACGGAGCTCGACGT
CAGCGCTTGCCAACGCCTCACAAGCCTGCCGGACACGATCGGCACCATGT
CAGCGCTGCTGCGGCTCCACATCAGCCGGTGCAAGGGGCTCATCAGCCTG
CCGGACGCCATCGGCGGGCTCACGACACTGGAACAGCTCCATGCCAATGG
CTGCAGCCAGCTCGCGCGCCTGCCGGACTCCGTCGGCGCGTTTGTAGCAC
TCACTGACCTCGACTTGAGCAGGGCTTCAGAGCTAACAAGTCTGCCAAGC
ACCATCGGCAACCTGTCTGCGCTCACGGTGCTCAATTTGTGCGCCTGCCG
TGCGCTCAAGAGCCTGCCGGATTCAATCGGCGATCTGGCAGCGCTCACGG
TGCTCGACATCAGCGGTTGCTTCAGGCTCACCAGCTTGCCGGACAGCATG
TGCGACCTCGCGGCGCTAACGAGCCTCAACCTGGGCTACACGGCCTTTGA
GGCGCTGCCGGACCGCTTCGATACCATCGGCAACCTGGCGGCGCTGACCA
CGCTTGACCTCAGCGAGTGCGAGGTACTCACAAGTCTCCCGCTCACATTC
GGTCAATTGCACGCCTTGGAGCAGCTCAACTTGAGCGACTGCACATCGCT
GACTCTGCTGCCAGACGGCATCAGCGCTCTCGCAGCGCTGACTGTGCTCA
ACTTGAGCTCCTGCACGCAGCTTACGGAGCTGCCGGACTTCATCGCCGGC
CTCACAGCGCTGACCTCCCTCGACATCAGCCACTGCGAGCAGCTAACCAG
CCTGCCTGACGCCGTGGGGAGTCTGGCGTCGTTGACGGAGCTCGACGTCA
GCGCTTGCCAACGCCTCACAAGCCTGCCGGACACGATCGGCACCATGTCA
GCGCTGCTGCGGCTCCACATCAGCCGGTGCAAGGGGCTCATCAGCCTGCC
GGACGCCATCGGCGGGCTCACGACACTGGAACAGCTCCATGCCAATGGCT
GCAGCCAGCTGGCCAGCCTGCCCGACGCGATCTGCGAGCTGGGCGCGCTG
ACGTTCCTTGACGTGAACGGTTGCGAGCGGCTCATGGCGCTGCCGGAAAC
GCACGGCAAGCTGGAGCTGCTGCTCGCGAGGTTTGCGGCGGCGCCGCGGC
GCATGCCGCCGAGGCCTGGCTGGGGGCGCGGGAAGAGAGGGGAGGCGGTG
TCCATTCACTCCACATACAGGTGCGGCCAGGGACCGTGA
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protein sequence of jgi.p|Trimin1|177496

>Trimin1|177496|e_gw1.152.62.1 ID=Trimin1|177496|e_gw1.152.62.1|Name=jgi.p|Trimin1|177496|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=613bp
MTALPDSIGALPALTHLNVNSLSELTSLPSTIGSLSALTVLNLSECRQLK
SLPDSIGDLAVLTVLNLWNCADLTSLPDRICDLAALTRLDLGGTVDLHDC
RSLTCLPDSIGALAALTALDMEGCEQLQRLPNTIGQLAALTSLNVSGCAL
LTHLPDAIGTLQALTCLQARNCGALTQLPDSIAGLTALTNLNLSHCEQLT
SLPDAVGSLASLTELDVSACQRLTSLPDTIGTMSALLRLHISRCKGLISL
PDAIGGLTTLEQLHANGCSQLARLPDSVGAFVALTDLDLSRASELTSLPS
TIGNLSALTVLNLCACRALKSLPDSIGDLAALTVLDISGCFRLTSLPDSM
CDLAALTSLNLGYTAFEALPDRFDTIGNLAALTTLDLSECEVLTSLPLTF
GQLHALEQLNLSDCTSLTLLPDGISALAALTVLNLSSCTQLTELPDFIAG
LTALTSLDISHCEQLTSLPDAVGSLASLTELDVSACQRLTSLPDTIGTMS
ALLRLHISRCKGLISLPDAIGGLTTLEQLHANGCSQLASLPDAICELGAL
TFLDVNGCERLMALPETHGKLELLLARFAAAPRRMPPRPGWGRGKRGEAV
SIHSTYRCGQGP*
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mRNA from alignment at Contig_152:72998..78789+

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_14999 ID=mRNA_14999|Name=jgi.p|Trimin1|177496|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=5792bp|location=Sequence derived from alignment at Contig_152:72998..78789+ (Tribonema minus UTEX_B_3156 )
ATGACGGCGCTGCCGGACAGCATCGGCGCCTTGCCAGCACTCACCCACCT GAACGTGAACAGCCTCTCAGAGCTGACAAGTCTGCCGAGCACCATCGGCA GCCTGTCCGCACTCACTGTGCTCAACTTGAGCGAGTGCAGGCAGCTCAAG AGCCTGCCGGATTCGATCGGCGATCTGGCTGTGCTCACGGTTCTCAACCT CTGGAACTGTGCTGATCTCACCAGCCTGCCGGACCGCATCTGTGACCTGG CGGCGCTGACGAGGCTCGACTTGGGCGGCACGTACTTCAGGGCTTTACCG GATCGCTTTGGTGATCTGGCAGCACTAACAGAGCTCGACATACGTGATTC ATTCCTGAGGGCCCTGCCTGAGAGCATTGGCAGCCTGGCACGACTGAAGA CGCTCGTCGCATTTGGAATATGGTGCGACCGACTGCCGGAGCGGTTTGGC GAGTTGGCAGCGCTCACGACGCTAGATTTGAGCCGCTCCAACCTCAGCAG CGTGCCAGACTGCATCGGTGGCTTGGTAGCACTGCAGACGCTTACGTTGC GCCAACTATCCTGTGCCAGCCTGCCAGACACCATCGGCGACCTGGCGGCG CTGACAACGCTGGACCTCAGCGAGAGCGAGGCACTCACAAGTCTCCCGGT CACATTTGGTCAACTGCACGCCTTGGAGCAGCTCAACTTGAGCGGCTGCA CGACTCTGGCTCTGCTGCCAGACGACATCAGCGCTCTGGCGGCATTGTCA GTGCTCAACTTGAGCTCCTGCGCAGCTAGCGCGGCTGCCGGACGTCTGCG GCAAGCTGGCAGCAGCGCTCACGGAGCTGAACCTGCACGGGTGCGGGCGG CTCTCTCGCTTGCCGGACAGCCTCAACAGCCTCACAAAGCTACCGTCGCT CATGCTGCGCGATTGCGGACGGCTCATCTGCCTGCCGGAACATTTGCAGG GCCTTGCAGCGGTGACTAGGGTGGACTTGCACGACTGCAGATCGCTGACG TGCCTGCCGGACAGCATCGGCGCGCTGGCGGCTCTGACGGCGCTCGACAT GGAGGGGTGCGAGCAGCTGCAGCGGCTGCCCAATACCATCGGGCAGCTGG CGGCGCTGACGTCTCTCAATGTGAGCGGGTGCGCGCTGCTCACGCACCTG CCGGATGCAATCGGCACCCTGCAGGCGCTTACATGCCTCCAAGCGCGCAA CTGCGGAGCACTGACGCAGCTGCCGGACAGCATTGCCGGCCTGACGGCGC TGACCAACCTCAACCTCAGCCACTGCGAGCAGCTGACCAGCCTGCCTGAC GCCGTGGGGAGTCTGGCGTCGTTGACGGAGCTCGACGTCAGCGCTTGCCA ACGCCTCACAAGCCTGCCGGACACGATCGGCACCATGTCAGCGCTGCTGC GGCTCCACATCAGCCGGTGCAAGGGGCTCATCAGCCTGCCGGACGCCATC GGCGGGCTCACGACACTGGAACAGCTCCATGCCAATGGCTGCAGCCAGCT CGCGCGCCTGCCGGACTCGTTCTGCGACCTGGGCGCGCTGATGTTCCTCG ACCTGCACGGCTGCGAGCGGCTCACGACGCTGCCGGAAACGCACGGCAAG CTGGAGCTGCTCCTCAGGAGGTTTGCGGCGGCGCCGCGGCGCATGCCGCC GAGGCCTGGCTGGGGGCGCGGGAAGAGAGGGGAGGCGGTGTCCATTCACT CCACATACAGGTGCGGCCAGGGACCGTGATGCGCGCCAAGAGGTTGCGCA AGAGCCCTTATTAGTGATGGTTGTAGGCGACAGTGACGCATATGACAGGC TGCGTACAACAAGAGGTTGCGTGATGGCACTGCATATGCAATGGTGACTA TTCGTACTACTTATGCATGCATCATGATGATTTGCCCGCTCTTGTCTTCC TGTCTGCTTGTCATTGAAGCGCAGTGTATTGCAGATGATTGCTGTGCATA CGGCTGCACATAGAGTCATCACAGCAGACCATTGGGCCACTTCCATCAAA GTCCGCACACCAGTGAATCGCATGCACATTGCGCACTCATGTGATGCATC AACCCCCGGCATGCCTGTGCTCAGCAGCGTGATTGTGTGAATGCTGTTGT GCCTTTGAATAGGCTTGTATGCTCTTCTTGCCAGCCTTGCGTGCACACCC TTGAAGTGGCGCATCTGTAGGGGCATTCTACGGTCTGTTGTTGACAAGCT TCAACATTGCAAACCATTGCACCAGTTATGCTGTAACTGCTCAAAGTTAC AGCTGCTATTATGATGCCACACTGGTGCATCGCCCTGCGGCACCGCTTCC GATATCGAGCACTGCGCGTTGTGCTGTGCTGCAATATGCATGCAGGTGTA AGCAGACTTCACATTGGCATGTAGCTGCGGCTTCTTGTTGCTGAGGTGTC CCGTGACTGGCAAACATGAGCAGCTGCTGTGAATTGAATATTGTATCTGT AGGCCTGATGACAGGCGTTTATGTTGTGGAATAATTGCTTGATCAACAAT TGCAGTAATTCAGGTGAGAATTTGTGAGCTAACAGTACCATGCACAATAT CTAGATGTGGTTGTGGTTCAAAATGATCACACATGTTTATTAATGAGCAC ATGCATGTTTCTGAGCCCATGCAAATGCTTTGAACCCAGTACAATGTCAG CGGTGTACACGTGTACTCCAGTCAGTGGTTGTGTTGCATTTCCGGCTTGT GTGTCAGCACAGCGAGGGTGTGCAGTCGCTTGGTACTCAAACGCCGACTT CAGCGCCTCTCCACTGATTGAATGTCATTGGTCATGTCAACATGAATGTC TGCATGCATGAAGGTGCCGCAGTAAGTATCAATGCTCTCTGAGCCAATGC ACAACTTACGCAAGCGTGCATACAATGTGCAAGTTCACGCTTCGACCATT GCGCACTGTTCCGCAAGGTACCTGGGAGTTTCTCAACTGCCAGTGATGTG GGACATATACATCGTTGCTATGGTCTAATACTACGCCACAGGTCGCTTAT TGCATCGCAGCCCCTCAAGAGTACAGCACACTTCTGCACGCTGCTGACAG CGCCACATTCTCGAGTGAAAGACACTTCAAGGTTCACCTTCACCAGTTCA CGAGCTTGATGCTGCCAGCCAGGAGTGACATGAGGAGTTCTCACTTCGAA CAACTTCAATATGACGACTTGAAGTATGGGCAGACGCGGAAAAAGTAGCC TTGGTGCAGTCGGATCCAACCTCCTCTGGCCAGCGCGGCTAGCGCGAACC GATTAAATCACTGCCATCCCAGCAGCAGCGCACTGCGGCAGCCTCAGACC AGGACGCTGCCAAGGTTCTCACGGAAGATATGCAAGCAATGGAAGCCGAG GTCACACAGCAGAACCAAGGCGACGGAGTAGCCATTGACACCAGCTTGCT GCGCGAGCACCCTTATCTAGATAAAAGCATCGGCGCCGGCGAGGACCCTC AGGGTGCATCGGAGCACGTGGGTGGCCCGGCTGCATCTGAGGGCAAGGCC GACGAGCTGCGGGATGGCGGCGGGAGCGCTGCAGCAGATTGCGTTTCCGC GGCTGTGGGTGGGAGCAAGAGCGGTGCTGTTGACTCAGCGATGCGGCTGG ACTCCGAGGTGCATAAGCGCGTCATGGCAGCAGAGCAGAGCATGGACACA CTCATCCAGGTGTTCACCGTGCTGGCGCAGGGTCGCAACCTTCCTAAGCG TGCCTGGGACCTGTGCACTGCACTGCATCACAAGGTGCGTCCCTCTGCGC ACATAAAACTGCGTGGTCCGCGGCCGCCAGAAGCAGCTGCTCATGCGTTC TTCAGCAAGCATGTCGTCCGGCTGCGGCTCAGCGGGTCCTTCGACATCGA CCCCCTTCTAGCGCTGAGTCTCAGCCCTGCAGCAAGACAGCGAGGTGCCA CCGACGCGTTTGAGGACATGTACGCAGACGTGGGTGTCATCACCTTGCGG CACTACCGCGGGCCGCTCAAGCGCATACCGCGCAACTGCAAGGAAGTGCG CCTGGCGTCGAGCAATCCCACTTATCACCTGCGGCTGCTGCGGTCAGTGG ACCGACACACAGATGCAGGCCTTCGAGCGAATGCGCTGATGCTGGTCCAG TCGCTCTCAGCACATAAATACATGGCGGTGCTGCCGGACAGCGTCGGCGC GTTTGTAGCACTCACTGACCTCGACTTGAGCAGGGCTTCAGAGCTAACAA GTCTGCCAAGCACCATCGGCAACCTGTCTGCGCTCACGGTGCTCAATTTG TGCGCCTGCCGTGCGCTCAAGAGCCTGCCGGATTCAATCGGCGATCTGGC AGCGCTCACGGTGCTCGACATCAGCGGTTGCTTCAGGCTCACCAGCTTGC CGGACAGCATGTGCGACCTCGCGGCGCTAACGAGCCTCAACCTGGGCTAC ACGGCCTTTGAGGCGCTGCCGGACCGCTTCGGTCATCTGGCAGCGCTGAC AGAGCTCGACATAAGCAATTCATCCCTGAGGTCCCTGCCGGAGAGCATTG GCAGCCTGGCGCGACTGAAGACGCTCGTCACATCTGGCATCAAGTGCGAC CTACTGCTGGAACATCACGGTCTTGGCCTGTTGGCAGCACTCACAACGCT AGACCTGAGCCTGTCCAGCCTCATCTTCAGCCTGTCAGATACCATCGGCA ACCTGGCGGCGCTGACCACGCTTGACCTCAGCGAGTGCGAGGTACTCACA AGTCTCCCGCTCACATTCGGTCAATTGCACGCCTTGGAGCAGCTCAACTT GAGCGACTGCACATCGCTGACTCTGCTGCCAGACGGCATCAGCGCTCTCG CAGCGCTGACTGTGCTCAACTTGAGCTCCTGCACGCAGCTTACGGAGCTG CCGGACTTGTGCGGCAAGCTGGCAGCAGCGCTCACGGAGCTGAACCTGCG CGGGTGCGGGCAGCTCTCTCACTTGCCGGACAGCCTCAACAGCCTCACAA AGCTACAGACGCTCACGCTGCGCGACTGCGGACAGCTCATCTGCCTGCCG GAACATTTACAGGGCCTTGCAGCGCTGACCAGCGTAGACTTGCACGACTG CCGATCGCTGACGTGCCTGCCGGACAGCATCGGTGCGCTGGCGGCTTTGA CGGCGCTCGACATGGAGGGGTGCGACCAACTGCAGCGGCTGCCCGATACC ATTGGCCAGCTGACGGCACTGACATCTCTCAATCTGGGCAGCTGCGCGCG ACTGGCGCACCTGCCGGATGCGTTCGACACCTTGCAGGCGCTCGAGTGCC TTCAAGCGCGCAACTGCGGAGCACTGACGCGTCTGCCGGACAGCATCGCC GGCCTCACAGCGCTGACCTCCCTCGACATCAGCCACTGCGAGCAGCTAAC CAGCCTGCCTGACGCCGTGGGGAGTCTGGCGTCGTTGACGGAGCTCGACG TCAGCGCTTGCCAACGCCTCACAAGCCTGCCGGACACGATCGGCACCATG TCAGCGCTGCTGCGGCTCCACATCAGCCGGTGCAAGGGGCTCATCAGCCT GCCGGACGCCATCGGCGGGCTCACGACACTGGAACAGCTCCATGCCAATG GCTGCAGCCAGCTGGCCAGCCTGCCCGACGCGATCTGCGAGCTGGGCGCG CTGACGTTCCTTGACGTGAACGGTTGCGAGCGGCTCATGGCGCTGCCGGA AACGCACGGCAAGCTGGAGCTGCTGCTCGCGAGGTTTGCGGCGGCGCCGC GGCGCATGCCGCCGAGGCCTGGCTGGGGGCGCGGGAAGAGAGGGGAGGCG GTGTCCATTCACTCCACATACAGGTGCGGCCAGGGACCGTGA
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Coding sequence (CDS) from alignment at Contig_152:72998..78789+

>mRNA_14999 ID=mRNA_14999|Name=jgi.p|Trimin1|177496|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=1839bp|location=Sequence derived from alignment at Contig_152:72998..78789+ (Tribonema minus UTEX_B_3156 )
ATGACGGCGCTGCCGGACAGCATCGGCGCCTTGCCAGCACTCACCCACCT
GAACGTGAACAGCCTCTCAGAGCTGACAAGTCTGCCGAGCACCATCGGCA
GCCTGTCCGCACTCACTGTGCTCAACTTGAGCGAGTGCAGGCAGCTCAAG
AGCCTGCCGGATTCGATCGGCGATCTGGCTGTGCTCACGGTTCTCAACCT
CTGGAACTGTGCTGATCTCACCAGCCTGCCGGACCGCATCTGTGACCTGG
CGGCGCTGACGAGGCTCGACTTGGGCGGCACGGTGGACTTGCACGACTGC
AGATCGCTGACGTGCCTGCCGGACAGCATCGGCGCGCTGGCGGCTCTGAC
GGCGCTCGACATGGAGGGGTGCGAGCAGCTGCAGCGGCTGCCCAATACCA
TCGGGCAGCTGGCGGCGCTGACGTCTCTCAATGTGAGCGGGTGCGCGCTG
CTCACGCACCTGCCGGATGCAATCGGCACCCTGCAGGCGCTTACATGCCT
CCAAGCGCGCAACTGCGGAGCACTGACGCAGCTGCCGGACAGCATTGCCG
GCCTGACGGCGCTGACCAACCTCAACCTCAGCCACTGCGAGCAGCTGACC
AGCCTGCCTGACGCCGTGGGGAGTCTGGCGTCGTTGACGGAGCTCGACGT
CAGCGCTTGCCAACGCCTCACAAGCCTGCCGGACACGATCGGCACCATGT
CAGCGCTGCTGCGGCTCCACATCAGCCGGTGCAAGGGGCTCATCAGCCTG
CCGGACGCCATCGGCGGGCTCACGACACTGGAACAGCTCCATGCCAATGG
CTGCAGCCAGCTCGCGCGCCTGCCGGACTCCGTCGGCGCGTTTGTAGCAC
TCACTGACCTCGACTTGAGCAGGGCTTCAGAGCTAACAAGTCTGCCAAGC
ACCATCGGCAACCTGTCTGCGCTCACGGTGCTCAATTTGTGCGCCTGCCG
TGCGCTCAAGAGCCTGCCGGATTCAATCGGCGATCTGGCAGCGCTCACGG
TGCTCGACATCAGCGGTTGCTTCAGGCTCACCAGCTTGCCGGACAGCATG
TGCGACCTCGCGGCGCTAACGAGCCTCAACCTGGGCTACACGGCCTTTGA
GGCGCTGCCGGACCGCTTCGATACCATCGGCAACCTGGCGGCGCTGACCA
CGCTTGACCTCAGCGAGTGCGAGGTACTCACAAGTCTCCCGCTCACATTC
GGTCAATTGCACGCCTTGGAGCAGCTCAACTTGAGCGACTGCACATCGCT
GACTCTGCTGCCAGACGGCATCAGCGCTCTCGCAGCGCTGACTGTGCTCA
ACTTGAGCTCCTGCACGCAGCTTACGGAGCTGCCGGACTTCATCGCCGGC
CTCACAGCGCTGACCTCCCTCGACATCAGCCACTGCGAGCAGCTAACCAG
CCTGCCTGACGCCGTGGGGAGTCTGGCGTCGTTGACGGAGCTCGACGTCA
GCGCTTGCCAACGCCTCACAAGCCTGCCGGACACGATCGGCACCATGTCA
GCGCTGCTGCGGCTCCACATCAGCCGGTGCAAGGGGCTCATCAGCCTGCC
GGACGCCATCGGCGGGCTCACGACACTGGAACAGCTCCATGCCAATGGCT
GCAGCCAGCTGGCCAGCCTGCCCGACGCGATCTGCGAGCTGGGCGCGCTG
ACGTTCCTTGACGTGAACGGTTGCGAGCGGCTCATGGCGCTGCCGGAAAC
GCACGGCAAGCTGGAGCTGCTGCTCGCGAGGTTTGCGGCGGCGCCGCGGC
GCATGCCGCCGAGGCCTGGCTGGGGGCGCGGGAAGAGAGGGGAGGCGGTG
TCCATTCACTCCACATACAGGTGCGGCCAGGGACCGTGA
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