mRNA_14957 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|176236
Unique NamemRNA_14957
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
[Close]
BLAST of jgi.p|Trimin1|176236 vs. uniprot
Match: A0A836CKU0_9STRA (RNA_pol_sigma70 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CKU0_9STRA)

HSP 1 Score: 778 bits (2010), Expect = 1.360e-282
Identity = 415/415 (100.00%), Postives = 415/415 (100.00%), Query Frame = 1 
Query:    1 MRVRRIVAFTPVAVAVCLVPTCAVHVHLQIGRPARCHHRASHISVRQRQSSCQGLHAAATAIAGPPPVRRGRKPRSNQQQPHAGTSTRGDSSSGSSGTASFAAAGAVEGPLCMEVRRLAEWFVVRKQLATTLRRAPSRTEWAHSLGVTPDELNSGIEEAQSAQAELFKRHKALVWYMARGFRRCGLAADDLWQEACVGLLRASAVYNSERGAKFSSLAFLHMRRELQLAAANKGMGMRLPYTTATQIQALKRAEAALSVGLGRAPSDAELAAESGIVSRRRVAQLRPFMASSRCLVTYRDDMTGRAAAAVSSGSGVAVGGEAGGGSVAQAAAPVHSEAVVLGPDEVLEADEVQRLMALLSPKERRVLSLRYGLGQASGARSFKDVAGMLGISYARVRQAETSALLKMHAHMEDAA 1245
            MRVRRIVAFTPVAVAVCLVPTCAVHVHLQIGRPARCHHRASHISVRQRQSSCQGLHAAATAIAGPPPVRRGRKPRSNQQQPHAGTSTRGDSSSGSSGTASFAAAGAVEGPLCMEVRRLAEWFVVRKQLATTLRRAPSRTEWAHSLGVTPDELNSGIEEAQSAQAELFKRHKALVWYMARGFRRCGLAADDLWQEACVGLLRASAVYNSERGAKFSSLAFLHMRRELQLAAANKGMGMRLPYTTATQIQALKRAEAALSVGLGRAPSDAELAAESGIVSRRRVAQLRPFMASSRCLVTYRDDMTGRAAAAVSSGSGVAVGGEAGGGSVAQAAAPVHSEAVVLGPDEVLEADEVQRLMALLSPKERRVLSLRYGLGQASGARSFKDVAGMLGISYARVRQAETSALLKMHAHMEDAA
Sbjct:    1 MRVRRIVAFTPVAVAVCLVPTCAVHVHLQIGRPARCHHRASHISVRQRQSSCQGLHAAATAIAGPPPVRRGRKPRSNQQQPHAGTSTRGDSSSGSSGTASFAAAGAVEGPLCMEVRRLAEWFVVRKQLATTLRRAPSRTEWAHSLGVTPDELNSGIEEAQSAQAELFKRHKALVWYMARGFRRCGLAADDLWQEACVGLLRASAVYNSERGAKFSSLAFLHMRRELQLAAANKGMGMRLPYTTATQIQALKRAEAALSVGLGRAPSDAELAAESGIVSRRRVAQLRPFMASSRCLVTYRDDMTGRAAAAVSSGSGVAVGGEAGGGSVAQAAAPVHSEAVVLGPDEVLEADEVQRLMALLSPKERRVLSLRYGLGQASGARSFKDVAGMLGISYARVRQAETSALLKMHAHMEDAA 415
[Close]
BLAST of jgi.p|Trimin1|176236 vs. uniprot
Match: F0Y3L3_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y3L3_AURAN)

HSP 1 Score: 113 bits (282), Expect = 5.350e-24
Identity = 103/306 (33.66%), Postives = 154/306 (50.33%), Query Frame = 1 
Query:  331 LCMEVRRLAEWFVVRKQLATTLRRAPS---RTEWAHSLGVTPDELNSGIEEAQSAQAELFKRHKALVWYMARGFRRCGLAADDLWQEACVGLLRASAVYNSERGAKFSSLAFLHMRRELQLAAANKGMGMRLPYTTATQIQALKRAEAALSVGLGRAPSDAELAAESGIVSRRRVAQLRPFMASSRCLVTYRDDMTGRAAAAVSSGSGVAVGGEAGGGSVAQAAAPVHSEAVVLGPDE-VLEADEVQRLMALLSP----KERRVLSLRYGL-GQASGARSFKDVAGMLGISYARVRQAETSALLKM 1221
            L  EV+RL  +  VR  L   L RA        WA +L V+ D+L +       A++ L   +  LV  +A+ +R CGLA +DL QE   GL RA   ++ ERG +FS+ A   +R+ +  A A +   +RLP     Q+ ++++A A LS  LGR  +D ELA    +    ++A LR      RC       +  + A     GS V  GG AG  ++A++     S+  +L PDE V EA   + +  LL+     +ER VL +R+GL G A  +++   +A  L +S  RVRQ E  AL K+
Sbjct:   79 LAREVQRLRSYEDVRATLGEELGRAAEDVGEAAWARALAVSADDLRAARSRGVDARSTLTSANLRLVVSIAKRYRFCGLAQEDLLQEGAFGLSRAVERFDPERGFRFSTYATFWIRQAVLRACAEQSRVIRLPAHVHDQLASMRKASAELSRRLGRDATDDELADHLELEKPEKLAFLR------RCAAQDPSSLDEKHAIHAGRGSSVGGGGAAGATTIAESL----SDDTILVPDEFVAEAASREYVGDLLATVCNDRERDVLGMRFGLYGNAPISKT--KIAERLAVSRERVRQIEVRALTKL 372
[Close]
BLAST of jgi.p|Trimin1|176236 vs. uniprot
Match: A0A0C1R5L5_9CYAN (RNA polymerase sigma factor n=1 Tax=Tolypothrix bouteillei VB521301 TaxID=1479485 RepID=A0A0C1R5L5_9CYAN)

HSP 1 Score: 106 bits (265), Expect = 3.770e-22
Identity = 85/297 (28.62%), Postives = 146/297 (49.16%), Query Frame = 1 
Query:  340 EVRRLAEWFVVRKQLATTLRRAPSRTEWAHSLGVTPDELNSGIEEAQSAQAELFKRHKALVWYMARGFRRCGLAADDLWQEACVGLLRASAVYNSERGAKFSSLAFLHMRRELQLAAANKGMGMRLPYTTATQIQALKRAEAALSVGLGRAPSDAELAAESGIVSRRRVAQLRPFMASSRCLVTYRDDMTGRAAAAVSSGSGVAVGGEAGGGSVAQAAAPVHSEAVVLGPDEVLEA---DEVQRLMALLSPKERRVLSLRYGLGQASGARSFKDVAGMLGISYARVRQAETSALLKM 1221
            +V+R      +R+ L T L R PS  EWA +  + P ELN  I + + A+ ++ + +  LV  +A+ + +  +   DL QE  +G+ R    ++  +G +FS+ A+  +R+ +  A A KG  +RLP     ++  +K+A+  LS  LGRAP+ +ELA E  +  R    Q+R ++  +R  ++    +                     G +       +  +      D V ++   +++ RLMA L+P++R VLSLR+GL     A +   +  +L IS  RVRQ E  AL K+
Sbjct:   35 QVQRSTALHEIRESLTTQLNRQPSLEEWASATQLEPAELNEAIADGEVAKRKMVEANLRLVVSVAKKYIKRNVDLLDLIQEGSIGMQRGVEKFDPTKGYRFSTYAYWWIRQAITRAIAEKGRTIRLPIHITEKLNKIKKAQRQLSQRLGRAPTASELAKELELTPR----QVREYLEKARLPLSLDLRL---------------------GDNYDTELGEMLEDPGTSPEDFVTQSSLSNDLDRLMAELTPQQREVLSLRFGLNDGQ-ALTLSRIGELLNISRERVRQIEREALNKL 305
[Close]
BLAST of jgi.p|Trimin1|176236 vs. uniprot
Match: A0A1Z4NQZ4_9CYAN (Group 2 sigma 70-type sigma factor D n=1 Tax=Calothrix sp. NIES-3974 TaxID=2005462 RepID=A0A1Z4NQZ4_9CYAN)

HSP 1 Score: 106 bits (265), Expect = 3.770e-22
Identity = 85/298 (28.52%), Postives = 147/298 (49.33%), Query Frame = 1 
Query:  340 EVRRLAEWFVVRKQLATTLRRAPSRTEWAHSLGVTPDELNSGIEEAQSAQAELFKRHKALVWYMARGFRRCGLAADDLWQEACVGLLRASAVYNSERGAKFSSLAFLHMRRELQLAAANKGMGMRLPYTTATQIQALKRAEAALSVGLGRAPSDAELAAESGIVSRRRVAQLRPFMASSRCLVTYRDDMTGRAAAAVSSGSGVAVGGEAGGGSVAQAAAPVHSEAVVLGPDEVLE----ADEVQRLMALLSPKERRVLSLRYGLGQASGARSFKDVAGMLGISYARVRQAETSALLKM 1221
            +V+R      +R +LAT   R PS  EWA    + P+EL   + E + A+ ++ + +  LV  +A+ + +  +   DL QE  +G+ R    ++  +G +FS+ A+  +R+ +  A A KG  +RLP     ++  +K+A+  LS  LG APS +ELA E  +      AQ+R ++  SR  ++    M                    G     +    +  E +   P+E +     ++++Q +MA L+P++R V+SLR+GL   + A +   +  +L IS  RVRQ E  AL K+
Sbjct:   35 QVQRATALSEIRDELATKWGRQPSLEEWAEVANIKPEELRLALAEGEIAKRKMVEANLRLVVSVAKKYIKRNMDLLDLIQEGSIGMQRGVEKFDPSKGYRFSTYAYWWIRQAITRAIAEKGRTIRLPIHITEKLNKIKKAQRQLSQRLGHAPSISELAEELKLTP----AQVREYLEKSRLPLSLDLRM--------------------GDNQDTELGEMLEDENIC--PEEFVTQSALSEDLQTMMADLTPQQREVISLRFGLADGN-AMTLARIGEVLNISRERVRQIEREALNKL 305
[Close]
BLAST of jgi.p|Trimin1|176236 vs. uniprot
Match: A0A443NLF5_9MAGN (RNA polymerase sigma factor n=1 Tax=Cinnamomum micranthum f. kanehirae TaxID=337451 RepID=A0A443NLF5_9MAGN)

HSP 1 Score: 109 bits (273), Expect = 3.970e-22
Identity = 82/304 (26.97%), Postives = 152/304 (50.00%), Query Frame = 1 
Query:  331 LCMEVRRLAEWFVVRKQLATTLRRAPSRTEWAHSLGVTPDELNSGIEEAQSAQAELFKRHKALVWYMARGFRRCGLAADDLWQEACVGLLRASAVYNSERGAKFSSLAFLHMRRELQLAAANKGMGMRLP---YTTATQIQALKRAEAALSVGLGRAPSDAELAAESGIVSRRRVAQLRPFMASSRCLVTYRDDMTGRAAAAVSSGSGVAVGGEAGGGSVAQAAAPVHSEAVVLGPDEVLEADEVQRLMALLSPKERRVLSLRYGLGQASGARSFKDVAGMLGISYARVRQAETSALLKMHAHM 1233
            L ++++ L +   V+++L     R P+  EWA ++G+   +L S +    S++ ++   +  LV ++A+ F+  GL+  DL QE  +GL+++   +  E G +FS+ ++  +R+ ++ A       +RLP   Y   TQI+ ++R    L +  G  P++ ELA   GI    RV +L   +AS+R  V+ +          V    GV         +  +  A   +E   +   + L    V+ L+ +LSP+ER+++ LR+G+      ++   +  M G+S  RVRQ E+ AL K+  H+
Sbjct:  288 LSVKIQELMKLEEVKQKLQLQFGREPTMVEWAEAVGMNCRDLKSCLHSGNSSREKMIYANSRLVVHVAKQFQNRGLSLQDLLQEGSMGLMKSLEKFKPEVGCRFSTYSYWWIRQTIRRAIVQNSRIIRLPENVYALLTQIRNVRR----LFIQEGHQPTNEELARRVGI----RVEKLEMVLASARSPVSMQQS--------VWQDEGV---------TFQEITADPEAEIPEISATKQLMRRHVRNLLCVLSPRERQIIRLRFGIQDGGQGKTLSAIGDMFGLSKERVRQLESRALDKLKNHL 566
[Close]
BLAST of jgi.p|Trimin1|176236 vs. uniprot
Match: A0A1Z4IRL0_9CYAN (RpoD family RNA polymerase sigma factor n=12 Tax=Nostocales TaxID=1161 RepID=A0A1Z4IRL0_9CYAN)

HSP 1 Score: 106 bits (264), Expect = 5.160e-22
Identity = 84/298 (28.19%), Postives = 146/298 (48.99%), Query Frame = 1 
Query:  340 EVRRLAEWFVVRKQLATTLRRAPSRTEWAHSLGVTPDELNSGIEEAQSAQAELFKRHKALVWYMARGFRRCGLAADDLWQEACVGLLRASAVYNSERGAKFSSLAFLHMRRELQLAAANKGMGMRLPYTTATQIQALKRAEAALSVGLGRAPSDAELAAESGIVSRRRVAQLRPFMASSRCLVTYRDDMTGRAAAAVSSGSGVAVGGEAGGGSVAQAAAPVHSEAVVLGPDEVLEAD----EVQRLMALLSPKERRVLSLRYGLGQASGARSFKDVAGMLGISYARVRQAETSALLKM 1221
            +V+R +    VR+  A  L R P+  EWA + G+ P ELN  I +A+ A+ ++ + +  LV  +A+ + +  +   DL QE  +G+ R    ++  +G +FS+ A+  +R+ +  A A KG  +RLP     ++  +K+A+  LS  LGRAP+ +ELA E  +  R    Q+R ++  +R  ++    +                      G           E   + P+E +       +++RLM  L+P+++ V+SLR+GL     A +   +  +L IS  RVRQ E  AL K+
Sbjct:   35 QVQRASLLHEVRESFAIQLGRQPTLQEWAKATGLEPAELNEAIADAEIAKRKMVEANLRLVVSVAKKYIKRNVDLLDLIQEGSIGMQRGVEKFDPTKGYRFSTYAYWWIRQAITRAIAEKGRTIRLPIHITEKLNKIKKAQRHLSQKLGRAPTASELAQELELTPR----QVREYLEKARVPLSLDLRL----------------------GDNYDTELGEMLEDPGVSPEEFVAQSSLSYDLERLMGELTPQQKEVISLRFGLKDGQ-AHTLASIGELLNISRERVRQIEREALTKL 305
[Close]
BLAST of jgi.p|Trimin1|176236 vs. uniprot
Match: A0A0S3TSB4_9CYAN (RpoD family RNA polymerase sigma factor n=17 Tax=Nostocales TaxID=1161 RepID=A0A0S3TSB4_9CYAN)

HSP 1 Score: 105 bits (262), Expect = 9.680e-22
Identity = 88/298 (29.53%), Postives = 145/298 (48.66%), Query Frame = 1 
Query:  340 EVRRLAEWFVVRKQLATTLRRAPSRTEWAHSLGVTPDELNSGIEEAQSAQAELFKRHKALVWYMARGFRRCGLAADDLWQEACVGLLRASAVYNSERGAKFSSLAFLHMRRELQLAAANKGMGMRLPYTTATQIQALKRAEAALSVGLGRAPSDAELAAESGIVSRRRVAQLRPFMASSRCLVTYRDDMTGRAAAAVSSGSGVAVGGEAGGGSVAQAAAPVHSEAVVLGPDEVLE----ADEVQRLMALLSPKERRVLSLRYGLGQASGARSFKDVAGMLGISYARVRQAETSALLKM 1221
            +V+R      VR+ LAT L R P+  EWA +  +   ELN  I +A+ A+ ++ + +  LV  +A+ + +  +   DL QE  +G+ R    ++  +G +FS+ A+  +R+ +  A A KG  +RLP     ++  +K+A   LS  LGRAPS AELA E  +  R    Q+R ++  +R  ++    +                      G           E     P+E +     + +++RLMA L+P++R V+SLR+GL     A +   +  +L IS  RVRQ E  AL K+
Sbjct:   35 QVQRATALHEVRELLATQLGREPTLEEWATATQLELTELNQAIADAEIAKRKMVEANLRLVVSVAKKYIKRNVDLLDLIQEGSIGMQRGVEKFDPTKGYRFSTYAYWWIRQAITRAIAEKGRTIRLPIHITEKLNKIKKARRQLSQRLGRAPSVAELAQELELTPR----QVREYLEKARVPLSLDIRL----------------------GDNYDTELGEMLEDPGASPEEFVTQSSLSGDLERLMAELTPQQREVISLRFGLNDGH-ALTLAKIGEILNISRERVRQIEREALSKL 305
[Close]
BLAST of jgi.p|Trimin1|176236 vs. uniprot
Match: K9U2G0_CHRTP (RNA polymerase, sigma 70 subunit, RpoD subfamily n=5 Tax=Chroococcidiopsis TaxID=54298 RepID=K9U2G0_CHRTP)

HSP 1 Score: 103 bits (257), Expect = 4.640e-21
Identity = 83/304 (27.30%), Postives = 148/304 (48.68%), Query Frame = 1 
Query:  340 EVRRLAEWFVVRKQLATTLRRAPSRTEWAHSLGVTPDELNSGIEEAQSAQAELFKRHKALVWYMARGFRRCGLAADDLWQEACVGLLRASAVYNSERGAKFSSLAFLHMRRELQLAAANKGMGMRLPYTTATQIQALKRAEAALSVGLGRAPSDAELAAESGIVSRRRVAQLRPFMASSRCLVTYRDDMTGRAAAAVSSGSGVAVGGEAGGGSVAQAAAPVHSEAVVLGPDEVLE----ADEVQRLMALLSPKERRVLSLRYGLGQASGARSFKDVAGMLGISYARVRQAETSALLKMHAHMED 1239
            +V+RL+  + ++++L   L R P+  EW+ +  +    L++ I E + A+  + + +  LV  +A+ + +  +   DL QE  +G+ R    ++  +G +FS+ A+  +R+ +  A A KG  +RLP     ++  +K+A+  LS  LGRAPS  ELA    +  +    Q+R ++  +R  ++   D+       V       +G                 E   L P+E +     + ++++LMA L+P++R VLSLR+GL     A +   +   L IS  RVRQ E  AL K+     D
Sbjct:   35 QVQRLSTLYALQEELVAKLGREPTLEEWSEAARIDKTALSTAIAEGEIAKRRMVEANLRLVVSVAKKYIKRNVDLLDLIQEGTIGMQRGVEKFDPTKGYRFSTYAYWWIRQAITRAIAEKGRTIRLPIHITEKLNKIKKAQRQLSQNLGRAPSIVELATALELTPK----QVREYLERARLPLSL--DLR------VGDNQDTELG--------------ELLEDTSLSPEEFVTESCLSTDIEKLMADLTPQQREVLSLRFGLADGQ-AMTLAKIGDRLNISRERVRQIEREALTKLRKRKAD 311
[Close]
BLAST of jgi.p|Trimin1|176236 vs. uniprot
Match: K9SBT3_9CYAN (RNA polymerase, sigma 70 subunit, RpoD subfamily n=1 Tax=Geitlerinema sp. PCC 7407 TaxID=1173025 RepID=K9SBT3_9CYAN)

HSP 1 Score: 103 bits (256), Expect = 6.350e-21
Identity = 87/300 (29.00%), Postives = 148/300 (49.33%), Query Frame = 1 
Query:  340 EVRRLAEWFVVRKQLATTLRRAPSRTEWAHSLGVTPDELNSGIEEAQSAQAELFKRHKALVWYMARGFRRCGLAADDLWQEACVGLLRASAVYNSERGAKFSSLAFLHMRRELQLAAANKGMGMRLPYTTATQIQALKRAEAALSVGLGRAPSDAELAAESGIVSRRRVAQLRPFMASSRCLVTYRDDMTGRAAAAVSSGSGVAVGGEAGGGSVAQAAAPVHSEAVVLGPDEVLEADEVQRLMALLSPKERRVLSLRYGLGQASGARSFKDVAGMLGISYARVRQAETSALLKMHAHMED 1239
            +V+RL+    +R+ L     R P+ TEWA + GV+  +L   I+E + A+  + + +  LV  +A+ + +  +   DL QE  +G+ R    ++  +G +FS+ A+  +R+ +  A A KG  +RLP     ++  +K+A+  LS  LGRA S AELA E  + ++    Q+R ++  +R  ++   D+       V       +G       + +   P   E       +V    +++ LMA L+P++R VLSLR+GL     A +   +   L IS  RVRQ E  AL K+     D
Sbjct:   35 QVQRLSGLQSIREGLVERWDREPTSTEWAEAAGVSEADLEQVIQEGELAKRRMVEANLRLVVSVAKKYIKRNVDLLDLIQEGTIGMQRGVEKFDPTKGYRFSTYAYWWIRQAITRAIAEKGRTIRLPIHITEKLNKIKKAQRQLSQKLGRAASAAELAEELDLTTK----QVRDYLEKARQPLSL--DLR------VGDNQDTELG------ELLEDTGPSPEEFTA----QVALRMDLEELMADLTPQQREVLSLRFGLRDGQ-AMTLAKIGDRLNISRERVRQIEREALTKLRKRKAD 311
[Close]
BLAST of jgi.p|Trimin1|176236 vs. uniprot
Match: A0A3M2FSV9_9CYAN (RNA polymerase sigma factor, RpoD/SigA family n=9 Tax=Cyanobacteria TaxID=1117 RepID=A0A3M2FSV9_9CYAN)

HSP 1 Score: 102 bits (255), Expect = 8.260e-21
Identity = 87/308 (28.25%), Postives = 146/308 (47.40%), Query Frame = 1 
Query:  340 EVRRLAEWFVVRKQLATTLRRAPSRTEWAHSLGVTPDELNSGIEEAQSAQAELFKRHKALVWYMARGFRRCGLAADDLWQEACVGLLRASAVYNSERGAKFSSLAFLHMRRELQLAAANKGMGMRLPYTTATQIQALKRAEAALSVGLGRAPSDAELAAESGIVSRRRVAQLRPFMASSR----CLVTYRDDMTGRAAAAVSSGSGVAVGGEAGGGSVAQAAAPVHSEAVVLGPDEVLEAD----EVQRLMALLSPKERRVLSLRYGLGQASGARSFKDVAGMLGISYARVRQAETSALLKMHAHMED 1239
            +V++L     +R++LA  L R P+R EWA +  ++  EL + IE  + A+ ++ + +  LV  +A+ + +  +   DL QE  +G+ R    ++  +G +FS+ A+  +R+ +  A A KG  +RLP     ++  +K+A+  LS  LGRA +  ELAAE  +      AQ+R ++  +R      V   D+        +   S                          + P+E         +++RLMA L+P++R VLSLR+GL       +   V  +L IS  RVRQ E  AL K+     D
Sbjct:   32 QVQQLTAMNEIREKLAAELNREPTRAEWAAAANISEAELETIIENGERAKRKMVEANLRLVVSVAKKYIKRNVDLLDLIQEGTIGMQRGVEKFDPTKGYRFSTYAYWWIRQAITRAIAEKGRTIRLPIHITEKLNKIKKAQRQLSQRLGRAATINELAAELELTP----AQVREYLERARQPLSLDVRVGDNQDTELGELLEDSS--------------------------ISPEEFATQSSLRSDLERLMADLTPQQRHVLSLRFGLENGQPL-TLAKVGELLNISRERVRQIEREALSKLRKRRGD 308
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|176236 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A836CKU0_9STRA1.360e-282100.00RNA_pol_sigma70 domain-containing protein n=1 Tax=... [more]
F0Y3L3_AURAN5.350e-2433.66Uncharacterized protein n=1 Tax=Aureococcus anopha... [more]
A0A0C1R5L5_9CYAN3.770e-2228.62RNA polymerase sigma factor n=1 Tax=Tolypothrix bo... [more]
A0A1Z4NQZ4_9CYAN3.770e-2228.52Group 2 sigma 70-type sigma factor D n=1 Tax=Calot... [more]
A0A443NLF5_9MAGN3.970e-2226.97RNA polymerase sigma factor n=1 Tax=Cinnamomum mic... [more]
A0A1Z4IRL0_9CYAN5.160e-2228.19RpoD family RNA polymerase sigma factor n=12 Tax=N... [more]
A0A0S3TSB4_9CYAN9.680e-2229.53RpoD family RNA polymerase sigma factor n=17 Tax=N... [more]
K9U2G0_CHRTP4.640e-2127.30RNA polymerase, sigma 70 subunit, RpoD subfamily n... [more]
K9SBT3_9CYAN6.350e-2129.00RNA polymerase, sigma 70 subunit, RpoD subfamily n... [more]
A0A3M2FSV9_9CYAN8.260e-2128.25RNA polymerase sigma factor, RpoD/SigA family n=9 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_135contigContig_135:181990..183321 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|176236|e_gw1.135.84.1
BRITEko00000,ko03021
KEGG koko:K03086
GOsGO:0000988,GO:0000990,GO:0003674,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006351,GO:0006352,GO:0006355,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009314,GO:0009416,GO:0009507,GO:0009536,GO:0009628,GO:0009889,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0016070,GO:0016987,GO:0018130,GO:0019219,GO:0019222,GO:0019438,GO:0031323,GO:0031326,GO:0032774,GO:0034641,GO:0034645,GO:0034654,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043254,GO:0044087,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0050789,GO:0050794,GO:0050896,GO:0051128,GO:0051171,GO:0051252,GO:0051716,GO:0060255,GO:0065007,GO:0071214,GO:0071478,GO:0071482,GO:0071704,GO:0080090,GO:0090304,GO:0097659,GO:0104004,GO:0140110,GO:1901360,GO:1901362,GO:1901576,GO:1903506,GO:2000112,GO:2000142,GO:2001141
DescriptionSigma-70 region 2
COG categoryK
Max annot lvl2759|Eukaryota
EggNOG OGsCOG0568@1|root,2QPRS@2759|Eukaryota
Evalue8.78e-25
Seed ortholog44056.XP_009035334.1
Hectar predicted targeting categorychloroplast
TranscriptId176558
TrackFilteredModels1
ProteinId176236
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|176236gene_14957Tribonema minus UTEX_B_3156 geneContig_135 181990..183321 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_14957_1exon_14957_1Tribonema minus UTEX_B_3156 exonContig_135 181990..183321 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_14957CDS_14957Tribonema minus UTEX_B_3156 CDSContig_135 181990..183321 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|176236Trimin1|176236|e_gw1.135.84.1Tribonema minus UTEX_B_3156 polypeptideContig_135 181990..183321 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_14957 ID=mRNA_14957|Name=jgi.p|Trimin1|176236|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1332bp|location=Sequence derived from alignment at Contig_135:181990..183321+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGAGGGTGAGGCGCATCGTGGCGTTCACACCCGTGGCCGTGGCTGTCTG
CTTGGTACCAACATGTGCAGTGCATGTTCATCTGCAAATCGGCAGACCCG
CACGATGTCACCATCGCGCCAGCCATATCAGCGTGCGTCAACGACAAAGC
AGCTGCCAGGGTTTACACGCTGCCGCAACCGCTATTGCGGGGCCACCGCC
CGTCAGAAGAGGTCGCAAGCCACGATCGAATCAACAGCAACCACACGCCG
GCACCAGCACAAGAGGCGACAGCAGCAGTGGCAGCAGTGGCACAGCATCC
TTTGCGGCCGCAGGAGCTGTAGAAGGACCTCTTTGCATGGAAGTACGGCG
GCTGGCGGAGTGGTTTGTGGTCAGAAAACAGTTGGCGACGACCCTTAGGC
GTGCGCCATCCAGGACGGAATGGGCGCACAGCCTGGGCGTAACGCCAGAT
GAGCTCAATTCGGGCATCGAAGAAGCTCAGAGCGCCCAAGCAGAGCTTTT
CAAACGCCACAAAGCTCTAGTTTGGTACATGGCTCGAGGGTTCCGCCGCT
GCGGCTTGGCGGCGGACGATCTGTGGCAGGAAGCCTGCGTGGGCCTCCTG
AGAGCCTCTGCCGTGTACAATAGCGAGCGCGGCGCCAAGTTCAGCTCGCT
GGCCTTCTTGCACATGCGCAGGGAGCTGCAGCTGGCGGCCGCCAATAAGG
GCATGGGCATGCGCCTGCCGTATACAACAGCCACCCAAATACAAGCCCTA
AAGCGCGCAGAAGCTGCTCTCTCTGTGGGCCTAGGGCGCGCCCCCAGCGA
TGCCGAGCTCGCGGCAGAAAGCGGCATAGTGTCGCGACGGCGCGTGGCCC
AACTGCGTCCGTTCATGGCCTCCAGCCGCTGCCTCGTCACCTACCGAGAC
GACATGACAGGGCGAGCGGCGGCAGCGGTAAGCAGCGGCAGCGGCGTGGC
GGTCGGAGGCGAGGCAGGCGGCGGCAGCGTGGCGCAGGCGGCGGCGCCGG
TGCACAGCGAAGCGGTAGTCTTGGGGCCAGATGAGGTCCTGGAGGCGGAC
GAGGTGCAGCGTCTCATGGCGCTGCTGTCGCCGAAGGAGCGGCGCGTGCT
GTCGCTAAGGTACGGCCTCGGCCAGGCCAGCGGCGCGCGCAGCTTCAAGG
ACGTCGCCGGCATGCTGGGCATCAGCTACGCGCGCGTGCGCCAGGCGGAG
ACGAGCGCGCTGCTCAAGATGCATGCGCACATGGAGGACGCTGCTGCTGC
CGCCGCCGGCAACAGCGCGCATGCGGCGGCGGCGACGGCGGCGCTGCAGC
AGCGGCAGCGGCGACGGCTCGTAGCGGCGTAA
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protein sequence of jgi.p|Trimin1|176236

>Trimin1|176236|e_gw1.135.84.1 ID=Trimin1|176236|e_gw1.135.84.1|Name=jgi.p|Trimin1|176236|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=444bp
MRVRRIVAFTPVAVAVCLVPTCAVHVHLQIGRPARCHHRASHISVRQRQS
SCQGLHAAATAIAGPPPVRRGRKPRSNQQQPHAGTSTRGDSSSGSSGTAS
FAAAGAVEGPLCMEVRRLAEWFVVRKQLATTLRRAPSRTEWAHSLGVTPD
ELNSGIEEAQSAQAELFKRHKALVWYMARGFRRCGLAADDLWQEACVGLL
RASAVYNSERGAKFSSLAFLHMRRELQLAAANKGMGMRLPYTTATQIQAL
KRAEAALSVGLGRAPSDAELAAESGIVSRRRVAQLRPFMASSRCLVTYRD
DMTGRAAAAVSSGSGVAVGGEAGGGSVAQAAAPVHSEAVVLGPDEVLEAD
EVQRLMALLSPKERRVLSLRYGLGQASGARSFKDVAGMLGISYARVRQAE
TSALLKMHAHMEDAAAAAAGNSAHAAAATAALQQRQRRRLVAA*
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mRNA from alignment at Contig_135:181990..183321+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_14957 ID=mRNA_14957|Name=jgi.p|Trimin1|176236|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1332bp|location=Sequence derived from alignment at Contig_135:181990..183321+ (Tribonema minus UTEX_B_3156 )
ATGAGGGTGAGGCGCATCGTGGCGTTCACACCCGTGGCCGTGGCTGTCTG
CTTGGTACCAACATGTGCAGTGCATGTTCATCTGCAAATCGGCAGACCCG
CACGATGTCACCATCGCGCCAGCCATATCAGCGTGCGTCAACGACAAAGC
AGCTGCCAGGGTTTACACGCTGCCGCAACCGCTATTGCGGGGCCACCGCC
CGTCAGAAGAGGTCGCAAGCCACGATCGAATCAACAGCAACCACACGCCG
GCACCAGCACAAGAGGCGACAGCAGCAGTGGCAGCAGTGGCACAGCATCC
TTTGCGGCCGCAGGAGCTGTAGAAGGACCTCTTTGCATGGAAGTACGGCG
GCTGGCGGAGTGGTTTGTGGTCAGAAAACAGTTGGCGACGACCCTTAGGC
GTGCGCCATCCAGGACGGAATGGGCGCACAGCCTGGGCGTAACGCCAGAT
GAGCTCAATTCGGGCATCGAAGAAGCTCAGAGCGCCCAAGCAGAGCTTTT
CAAACGCCACAAAGCTCTAGTTTGGTACATGGCTCGAGGGTTCCGCCGCT
GCGGCTTGGCGGCGGACGATCTGTGGCAGGAAGCCTGCGTGGGCCTCCTG
AGAGCCTCTGCCGTGTACAATAGCGAGCGCGGCGCCAAGTTCAGCTCGCT
GGCCTTCTTGCACATGCGCAGGGAGCTGCAGCTGGCGGCCGCCAATAAGG
GCATGGGCATGCGCCTGCCGTATACAACAGCCACCCAAATACAAGCCCTA
AAGCGCGCAGAAGCTGCTCTCTCTGTGGGCCTAGGGCGCGCCCCCAGCGA
TGCCGAGCTCGCGGCAGAAAGCGGCATAGTGTCGCGACGGCGCGTGGCCC
AACTGCGTCCGTTCATGGCCTCCAGCCGCTGCCTCGTCACCTACCGAGAC
GACATGACAGGGCGAGCGGCGGCAGCGGTAAGCAGCGGCAGCGGCGTGGC
GGTCGGAGGCGAGGCAGGCGGCGGCAGCGTGGCGCAGGCGGCGGCGCCGG
TGCACAGCGAAGCGGTAGTCTTGGGGCCAGATGAGGTCCTGGAGGCGGAC
GAGGTGCAGCGTCTCATGGCGCTGCTGTCGCCGAAGGAGCGGCGCGTGCT
GTCGCTAAGGTACGGCCTCGGCCAGGCCAGCGGCGCGCGCAGCTTCAAGG
ACGTCGCCGGCATGCTGGGCATCAGCTACGCGCGCGTGCGCCAGGCGGAG
ACGAGCGCGCTGCTCAAGATGCATGCGCACATGGAGGACGCTGCTGCTGC
CGCCGCCGGCAACAGCGCGCATGCGGCGGCGGCGACGGCGGCGCTGCAGC
AGCGGCAGCGGCGACGGCTCGTAGCGGCGTAA
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Coding sequence (CDS) from alignment at Contig_135:181990..183321+

>mRNA_14957 ID=mRNA_14957|Name=jgi.p|Trimin1|176236|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=1332bp|location=Sequence derived from alignment at Contig_135:181990..183321+ (Tribonema minus UTEX_B_3156 )
ATGAGGGTGAGGCGCATCGTGGCGTTCACACCCGTGGCCGTGGCTGTCTG
CTTGGTACCAACATGTGCAGTGCATGTTCATCTGCAAATCGGCAGACCCG
CACGATGTCACCATCGCGCCAGCCATATCAGCGTGCGTCAACGACAAAGC
AGCTGCCAGGGTTTACACGCTGCCGCAACCGCTATTGCGGGGCCACCGCC
CGTCAGAAGAGGTCGCAAGCCACGATCGAATCAACAGCAACCACACGCCG
GCACCAGCACAAGAGGCGACAGCAGCAGTGGCAGCAGTGGCACAGCATCC
TTTGCGGCCGCAGGAGCTGTAGAAGGACCTCTTTGCATGGAAGTACGGCG
GCTGGCGGAGTGGTTTGTGGTCAGAAAACAGTTGGCGACGACCCTTAGGC
GTGCGCCATCCAGGACGGAATGGGCGCACAGCCTGGGCGTAACGCCAGAT
GAGCTCAATTCGGGCATCGAAGAAGCTCAGAGCGCCCAAGCAGAGCTTTT
CAAACGCCACAAAGCTCTAGTTTGGTACATGGCTCGAGGGTTCCGCCGCT
GCGGCTTGGCGGCGGACGATCTGTGGCAGGAAGCCTGCGTGGGCCTCCTG
AGAGCCTCTGCCGTGTACAATAGCGAGCGCGGCGCCAAGTTCAGCTCGCT
GGCCTTCTTGCACATGCGCAGGGAGCTGCAGCTGGCGGCCGCCAATAAGG
GCATGGGCATGCGCCTGCCGTATACAACAGCCACCCAAATACAAGCCCTA
AAGCGCGCAGAAGCTGCTCTCTCTGTGGGCCTAGGGCGCGCCCCCAGCGA
TGCCGAGCTCGCGGCAGAAAGCGGCATAGTGTCGCGACGGCGCGTGGCCC
AACTGCGTCCGTTCATGGCCTCCAGCCGCTGCCTCGTCACCTACCGAGAC
GACATGACAGGGCGAGCGGCGGCAGCGGTAAGCAGCGGCAGCGGCGTGGC
GGTCGGAGGCGAGGCAGGCGGCGGCAGCGTGGCGCAGGCGGCGGCGCCGG
TGCACAGCGAAGCGGTAGTCTTGGGGCCAGATGAGGTCCTGGAGGCGGAC
GAGGTGCAGCGTCTCATGGCGCTGCTGTCGCCGAAGGAGCGGCGCGTGCT
GTCGCTAAGGTACGGCCTCGGCCAGGCCAGCGGCGCGCGCAGCTTCAAGG
ACGTCGCCGGCATGCTGGGCATCAGCTACGCGCGCGTGCGCCAGGCGGAG
ACGAGCGCGCTGCTCAAGATGCATGCGCACATGGAGGACGCTGCTGCTGC
CGCCGCCGGCAACAGCGCGCATGCGGCGGCGGCGACGGCGGCGCTGCAGC
AGCGGCAGCGGCGACGGCTCGTAGCGGCGTAA
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