mRNA_1492 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|161947
Unique NamemRNA_1492
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
BLAST of jgi.p|Trimin1|161947 vs. uniprot
Match: A0A835Z6R3_9STRA (Glycosyl transferase n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z6R3_9STRA)

HSP 1 Score: 582 bits (1501), Expect = 1.010e-210
Identity = 274/274 (100.00%), Postives = 274/274 (100.00%), Query Frame = 1
Query:    1 MKLIDVFCFNGEPILELRLEYLQDVVDEFVLVESKYTFSGKVKDTFYCDDLVQHPKVTVLRLDYAPPVADEEWCRERSGSSSFMEEGCMDHWFREQHQRDYPKSYIVNKYADEDYIVVCSDVDEIPRKELLVSLKQHGNGQLHTPIYLHMAMLMYNMGWQTDEQWLRAFVINKEGFCNAASVDEMRRAEPYRVAPNGGWHCSYFLNSRDLARKIQAFSHQEYNKPEYTDTAHCQRCLLSGKDVLGRGELKAYTGQVPELFIKFNEKMLFLQKFS 822
            MKLIDVFCFNGEPILELRLEYLQDVVDEFVLVESKYTFSGKVKDTFYCDDLVQHPKVTVLRLDYAPPVADEEWCRERSGSSSFMEEGCMDHWFREQHQRDYPKSYIVNKYADEDYIVVCSDVDEIPRKELLVSLKQHGNGQLHTPIYLHMAMLMYNMGWQTDEQWLRAFVINKEGFCNAASVDEMRRAEPYRVAPNGGWHCSYFLNSRDLARKIQAFSHQEYNKPEYTDTAHCQRCLLSGKDVLGRGELKAYTGQVPELFIKFNEKMLFLQKFS
Sbjct:    1 MKLIDVFCFNGEPILELRLEYLQDVVDEFVLVESKYTFSGKVKDTFYCDDLVQHPKVTVLRLDYAPPVADEEWCRERSGSSSFMEEGCMDHWFREQHQRDYPKSYIVNKYADEDYIVVCSDVDEIPRKELLVSLKQHGNGQLHTPIYLHMAMLMYNMGWQTDEQWLRAFVINKEGFCNAASVDEMRRAEPYRVAPNGGWHCSYFLNSRDLARKIQAFSHQEYNKPEYTDTAHCQRCLLSGKDVLGRGELKAYTGQVPELFIKFNEKMLFLQKFS 274          
BLAST of jgi.p|Trimin1|161947 vs. uniprot
Match: A0A835ZIL3_9STRA (Glycosyltransferase family 17-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZIL3_9STRA)

HSP 1 Score: 324 bits (831), Expect = 2.130e-107
Identity = 152/224 (67.86%), Postives = 184/224 (82.14%), Query Frame = 1
Query:  160 HPKVTVLRLDYAPPVADEEWCRER--SGSSSFMEEGCMDHWFREQHQRDYPKSYIVNKYADEDYIVVCSDVDEIPRKELLVSLKQHGNGQLHTPIYLHMAMLMYNMGWQTDEQWLRAFVINKEGFCNAASVDEMRRAEPYRVAPNGGWHCSYFLNSRDLARKIQAFSHQEYNKPEYTDTAHCQRCLLSGKDVLGRG-ELKAYTGQVPELFIKFNEKMLFLQKFS 822
            HPK+TVL+L+ AP VAD +W  +R  S SSS+ME G MDHW+RE+HQRD+P SYI NKYA  +YIVVCSDVDEIPRKE L+SLKQH  GQL  PI+LHM MLMYNM WQTDEQW+RAFVINK  FC A S+DE+RRA+P RVAPNGGWHCS FL++  L RK+Q+FSHQE+NKPEYTD AH ++CL  GKDVL RG +L+ Y G+VPE+F  F++KMLFLQ+++
Sbjct:  141 HPKLTVLKLEDAPAVADHKWTLQRRASASSSYME-GSMDHWYREKHQRDHPHSYIKNKYASREYIVVCSDVDEIPRKEFLISLKQHCYGQLRDPIHLHMKMLMYNMKWQTDEQWMRAFVINKVSFCAATSIDELRRADPGRVAPNGGWHCSSFLSTAQLTRKLQSFSHQEFNKPEYTDAAHVRKCLSEGKDVLKRGGDLRKYAGEVPEVFRSFHKKMLFLQRYT 363          
BLAST of jgi.p|Trimin1|161947 vs. uniprot
Match: A0A835Z442_9STRA (Glycosyl transferase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z442_9STRA)

HSP 1 Score: 246 bits (628), Expect = 7.690e-78
Identity = 124/279 (44.44%), Postives = 177/279 (63.44%), Query Frame = 1
Query:    7 LIDVFCFNGEPILELRLEYLQDVVDEFVLVESKYTFSGKVKDTFY----CDDLVQHPKVTVLRLDYAPPVADEEWCRERSGSSSFMEEGCMDHWFREQHQRDYPKSYIVNKYADEDYIVVCSDVDEIPRKELLVSLKQHGNGQLHTPIYLHMAMLMYNMGWQTDEQWLRAFVINKEGFCNAASVDEMRRAEPYRVAPNGGWHCSYFLNSRDLARKIQAFSHQEYNKPEYTDTAHCQRCLLSGKDVLGRGELK----AYTGQVPELFIKFNEKMLFLQKF 819
            LIDV  +NGEP+LE RLEYL + VDE V+VESK T SG  K  ++     D L + P +T L++D  PP+  + W ++ + + ++M  G +  WFRE +QRD+   YI  KYA + YIV+CSDVDEIP  +++ +LK +    L TPIY H    MYN+ W+TDE W +AFVIN  G     S+ ++R A P RV P+ GWH S+ L   DL RKIQ+F+H E+NK ++T  AH ++CL +G D+  R  ++    A T  +PE   KF+EK++F Q++
Sbjct:    4 LIDVVSYNGEPVLEARLEYLSERVDELVIVESKCTHSGTPKPCYFGEKFSDILQKFPNITYLQIDSFPPLIPDVWMKKHA-ADAYMRGG-LGAWFRENYQRDFALPYIQKKYAGKQYIVMCSDVDEIPSLDVVNTLKAN-YASLSTPIYFHQRFYMYNLNWETDEFWSKAFVINDTGLTPEHSLSDIRTAPPKRVFPSAGWHLSFCLAKHDLIRKIQSFAHTEFNKDKFTSEAHVEKCLANGSDIFSRQHVRITRTATTDDLPEPIKKFHEKIMFAQRY 279          
BLAST of jgi.p|Trimin1|161947 vs. uniprot
Match: A0A835Z8R4_9STRA (Glycosyl transferase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z8R4_9STRA)

HSP 1 Score: 181 bits (460), Expect = 2.690e-52
Identity = 97/254 (38.19%), Postives = 143/254 (56.30%), Query Frame = 1
Query:    4 KLIDVFCFNGEPILELRLEYLQDVVDEFVLVESKYTFSGKVKDTFYCD------DLVQHPKVTVLRLDYAPPVADEEWCRERSGSSSFMEEGCMDHWFREQHQRDYPKSYIVNKYADEDYIVVCSDVDEIPRKELLVSLKQHGN--GQLHTPIYLHMAMLMYNMGWQTDEQWLRAFVINKEGFCNAASVDEMRRAEPYRVAPNGGWHCSYFLNSRDLARKIQAFSHQEYNKPEYTDTAHCQRCLLSGKDVLGRG 741
            K+ID   +NGEP L+LRLE L DVVDEF++VE+  TFSG  K   Y D      +  +H K+TV+ +D  P   +++   +R     +  E  +  WFREQHQRD    Y+ +KY D+ ++++  D DEIP+  ++  +++       L TP  L M+M  YN  W  D  W+ AF +N  G         + R +P +  P  GWH SYF N+ D+ARK+++FSH E++   YTD A  Q+CL  G ++L  G
Sbjct:   18 KIIDAILYNGEPSLQLRLELLGDVVDEFLVVEAATTFSGLAKPFLYTDRHASVLEPYRH-KLTVMIVDSFPEPPEDDL--KRLLPRYWTSEDSVLSWFREQHQRDLIAPYVTDKYKDQPFVLLVCDADEIPQPHVVQHMRRSPELYHTLETPTALQMSMFFYNFKWLRDHPWMSAFAVNNRGLRAIHGQLSVTRQQPIQYIPAAGWHLSYFTNAIDIARKLKSFSHTEFSGDSYTDLAMVQKCLKEGCNMLMPG 268          
BLAST of jgi.p|Trimin1|161947 vs. uniprot
Match: A0A835Z087_9STRA (Glycosyl transferase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z087_9STRA)

HSP 1 Score: 170 bits (430), Expect = 6.250e-48
Identity = 100/291 (34.36%), Postives = 153/291 (52.58%), Query Frame = 1
Query:    4 KLIDVFCFNGEPILELRLEYLQDVVDEFVLVESKYTFSGKVKDTFYCDDLVQHP--------KVTVLRLDYAPPVADEEWCRERSGSSSFMEEGCMDHWFREQHQRDYPKSYIVNKYADEDYIVVCSDVDEIPRKELLVSLKQHGN--GQLHTPIYLHMAMLMYNMGWQTDEQWLRAFVINKEGF-CNAASVDEMRRAEPYRVAPNGGWHCSYFLNSRDLARKIQAFSHQEYNKPEYTDTAHCQRCLLSGKDVLGRG-----ELKAYT--GQVPELFIKFNEKMLFLQKFS 822
            K+ID   +NGEP L+LRLE L+ VVDEFVLVE+  TFSG  K   + D   QH         KVT++ +   P  +D++    RS   S++ E     WFREQHQRD    Y+  +Y  + Y+++  D DEIP  +++  ++   +    L  P  + M M  YN  W   ++W  AF +N  G       + E R  +   +    GWH  YF N+  +ARK++++SH EY+  ++TD A  +RCL  G D+L  G     E + +     +P     F ++++FLQ++S
Sbjct:    4 KIIDTILYNGEPALQLRLEMLKHVVDEFVLVEAATTFSGVPKPFLFTD---QHAALLEPYRHKVTIIIVKSFPEPSDDDLRDLRS--RSYINEQSAPSWFREQHQRDLIAPYVAERYKGQRYVILVCDADEIPNPDIVHRMRSSVDLYHALDVPTAMFMRMFYYNFSWLRFQRWPMAFAVNDHGLQAIQGKLAETRLLQMQHIDA-AGWHLCYFFNAEGVARKLRSYSHTEYSGEKFTDVAMIRRCLREGCDILNAGSDTEDETRPFDDISSLPIELQNFQKQIMFLQEYS 288          
BLAST of jgi.p|Trimin1|161947 vs. uniprot
Match: A0A835Z5R1_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z5R1_9STRA)

HSP 1 Score: 144 bits (362), Expect = 7.530e-38
Identity = 85/284 (29.93%), Postives = 149/284 (52.46%), Query Frame = 1
Query:    4 KLIDVFCFNGEPILELRLEYLQDVVDEFVLVESKYTFSG-KVKDTFYCDDLVQ-----HPKVTVLRLDYAP-PVADEEWCRERSGSSSFMEEGCMDHWFREQHQRDYPKSYIVNKYADEDYIVVCSDVDEIPRKELLVSLKQHGNG--QLHTPIYLHMAMLMYNMGWQTDEQWLRAFVINKEGFCNAASVDEMRRAEPYRVAPNGGWHCSYFLNSRDLARKIQAFSHQEYNKPEYTDTAHCQRCLLSGKDVLGRGEL----KAYTGQVPELFIKFNEKMLFLQK 816
            K+ D+F +NGEP+LELRL+ L DVVDEF+ VE++   SG + K   Y +   +       K+T+L ++  P P A        S +  F E      W+RE + R+Y   Y+ +KY +  ++ +  DVDE+P   ++  ++       +L TP +L M    YN  W+  + +  A+ +N++GF +      + R  P      GGWH SYFL+   + RK+++++H+EY+  ++ D    + CL SG ++L +  +    +     +P    +F+  ++FLQ+
Sbjct:    1 KIADIFMYNGEPLLELRLKLLYDVVDEFICVEARDVHSGARQKQGLYVEQYAEVLKPYRDKLTILIIEEFPTPDAGTLEALHTSWTHIFPESAQA--WYRESYHRNYAADYVRSKYGNGAFVALVCDVDELPDPAIVREVRDSFGTYEKLSTPHHLVMEHFFYNFQWRYVDPFSNAYAVNEQGFRDMEGDLNLMRMSPNSGFRGGGWHGSYFLSVPGIVRKLESYAHREYSTEQFLDPNTIRGCLRSGCNILQQEPVWVLHEHNVSALPPPLQEFHCNLVFLQE 282          
BLAST of jgi.p|Trimin1|161947 vs. uniprot
Match: A0A835ZCH0_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZCH0_9STRA)

HSP 1 Score: 132 bits (333), Expect = 1.990e-33
Identity = 85/286 (29.72%), Postives = 145/286 (50.70%), Query Frame = 1
Query:    4 KLIDVFCFNGEPILELRLEYLQDVVDEFVLVESKYTFSG-KVKDTFYCDDLVQ-----HPKVTVLRL-DYAPPVADEEWCRERSGSSSFMEEGCMDHWFREQHQRDYPKSYIVNKYADED--YIVVCSDVDEIPRKELLVSLKQH--GNGQLHTPIYLHMAMLMYNMGWQTDEQWLRAFVINKEGFCNAASVDEMRRAEPYRVAPNGGWHCSYFLNSRDLARKIQAFSHQEYNKPEYTDTAHCQRCLLSGKDVLGRGEL----KAYTGQVPELFIKFNEKMLFLQK 816
            K+ID+F +NGEP+LELRL+ L DVVDEF+ VE++   SG + K   Y +           K+T+L + D+  P A      +   S    E      W+RE + R+Y   Y+ +KY   D  ++ +  D+DE+P   ++           +L T  +L M    YN  W+  + +  A+ +N++GF +        R+ P      GGWH SYFL+   + RK+Q+ +H+E++  ++ D    +RCL SG ++L +  +    +     +P    +F+  ++FLQ+
Sbjct:   13 KIIDIFMYNGEPLLELRLKLLYDVVDEFICVEARDVHSGARDKQGLYVEQYAAMLEPYRDKLTILIIEDFPTPDAGTVEALQARWSHILPESAQA--WYRENYHRNYAADYVRSKYVQNDVPFVPLVCDLDELPDPAIVGVFGDSFATYEKLSTAHHLIMEHFFYNFRWRYTQPFSNAYAVNEQGFQDMHGDLNRMRSIPDPGFRGGGWHGSYFLSVGGIIRKLQSNAHREFSTEQFVDPLMIRRCLRSGCNILQQEPVWVLHEHNVSALPLPLQEFHRNLVFLQE 296          
BLAST of jgi.p|Trimin1|161947 vs. uniprot
Match: A0A835Z660_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z660_9STRA)

HSP 1 Score: 131 bits (329), Expect = 5.090e-33
Identity = 80/278 (28.78%), Postives = 140/278 (50.36%), Query Frame = 1
Query:   25 FNGEPILELRLEYLQDVVDEFVLVESKYTFSG-KVKDTFYCDDLV-----QHPKVTVLRLDYAPPVADEEWCRERSGSSSFMEEGCMDHWFREQHQRDYPKSYIVNKYADED--YIVVCSDVDEIPRKELLVSLKQH--GNGQLHTPIYLHMAMLMYNMGWQTDEQWLRAFVINKEGFCNAASVDEMRRAEPYRVAPNGGWHCSYFLNSRDLARKIQAFSHQEYNKPEYTDTAHCQRCLLSGKDVLGRGEL----KAYTGQVPELFIKFNEKMLFLQK 816
            +NGEP+LELRL+ L D+VDEF+ VE++   SG + K   Y +           K+T+L +D  P   D         S + +       W+RE + R+Y   Y+ +KY   +  ++ +  DVDE+P   ++   +       +L TP +L M    YN  W+  E +  A+ +N++GF +      + R  P      GGWH SYFL+  D+ RK+++++ +E +  ++ D    +RCL SG ++L +  +    +     +P    +F+  ++FLQ+
Sbjct:    2 YNGEPLLELRLKLLYDMVDEFICVEARDVHSGSRQKQGLYVERFAGILEPYRDKLTILIIDEFP-TPDAGTLEALHTSWTHISPESAQAWYRENYHRNYAADYVHSKYVQSNVPFVALVCDVDELPDPAIVREFRDSFAAYEKLSTPHHLVMEHYFYNFRWRYVEPFSNAYAVNEQGFRDMEGDLNLMRMSPNPGFRGGGWHGSYFLSVPDIVRKLESYARREISTEQFVDPHMIRRCLRSGCNILQQEPVWVLHEHNVSALPVPLQEFHRNLVFLQE 278          
BLAST of jgi.p|Trimin1|161947 vs. uniprot
Match: A0A6C0I2Y0_9ZZZZ (Uncharacterized protein n=1 Tax=viral metagenome TaxID=1070528 RepID=A0A6C0I2Y0_9ZZZZ)

HSP 1 Score: 122 bits (305), Expect = 7.820e-28
Identity = 88/253 (34.78%), Postives = 128/253 (50.59%), Query Frame = 1
Query:    4 KLIDVFCFNGE-PILELRLEYLQDVVDEFVLVESKYTFSGKVKDTFYCDDLVQHPKVTVLRLDYAPPVADEEWCRERSGSSSFMEEGCMDHWFREQHQRDYPKSYIVN-KYADEDYIVVCSDVDEIPRKELLVSLKQHGNGQLHTPIY-LHMAMLMYNMGWQTDEQWLRAFVINKEGFCN-AASVDEMRRAEPYRVAPNGGWHCSYFLNSRDLARKIQAFSHQEYNKPEYTDTAHCQRCLLSGKDVLGRGELK 750
            K++D F F  E  +L+ RL  L   VD FVLVES  TF+G+ K  FY ++     K   +  ++A  +          G           HW  E++QR+     I      D DYI++ SDVDEIP  + L++LKQ    ++H     L      YN+  + +E W+RA VI  E + N   S D +R   P  +   GGWH SYF N++ +  KI+ FSHQE+N  E T+  H Q+C+ +  D+L R  +K
Sbjct:  309 KIVDAFMFYNELDMLKYRLTILAPHVDHFVLVESTRTFAGEPKPLFYKEN-----KDKEVFKEFASKIIHVVVDDFTVGPDC--------HWENEKYQRNCLHRGIEQLDLQDSDYIMI-SDVDEIPDPKTLIALKQE---EMHVQYANLKQDFYYYNLTAKMNEIWIRAKVITYEEYNNQGCSPDAIRLKTPPTMIEKGGWHLSYFGNTKMIQNKIRQFSHQEFNTEEITNADHLQQCIDNYTDILKRDGVK 544          
BLAST of jgi.p|Trimin1|161947 vs. uniprot
Match: A0A6C0DKQ2_9ZZZZ (Uncharacterized protein n=1 Tax=viral metagenome TaxID=1070528 RepID=A0A6C0DKQ2_9ZZZZ)

HSP 1 Score: 110 bits (274), Expect = 3.410e-25
Identity = 76/253 (30.04%), Postives = 123/253 (48.62%), Query Frame = 1
Query:    1 MKLIDVFCF-NGEPILELRLEYLQDVVDEFVLVESKYTFSGKVKDTFY--CDDLVQHPKVTVLRLDYAPPVADEEWCRERSGSSSFMEEGCMDHWFREQHQRDYPKSYI--VNKYADEDYIVVCSDVDEIPRKELLVSLKQ-----HGNGQLHTPIYLHMAMLMYNMGWQTDEQWLRAFVINKEGFCNAASVDEMRRAEPYRVAPNGGWHCSYFLNSRDLARKIQAFSHQEYNKPEYTDTAHCQRCLLSGKDV 729
            MKLID F F N E +L+ RL Y +D+VD F+++E+  TFSG  K  ++    D   H  +    +D  PP                     M  W RE +QR+     +  V K  ++D++ +  DVDEI  ++ L ++       H +   +T   LH     YN+  + D+  L   +I + G      + ++R +  Y +    GWH SYF ++  +  KI +FSH+EYNK E+T+  H + C+ +GK +
Sbjct:    1 MKLIDAFIFYNEEKMLDYRLNYYKDIVDYFIIIEATKTFSGLDKPLYFNRIKDKYSHLNIIHYIVDEFPPN--------------------MSAWDREHYQRECIHKALLKVPKLRNDDWVHIA-DVDEISNRDKLETVLSDTYYSHPDRVGYT---LHFDNYYYNLTSKMDQPCLATKLI-RYGELKNKVIKDVRFSTSYPLLHQFGWHMSYFFSAEGIKNKIMSFSHEEYNKDEFTNKEHIEDCIKNGKSL 228          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|161947 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835Z6R3_9STRA1.010e-210100.00Glycosyl transferase n=2 Tax=Tribonema minus TaxID... [more]
A0A835ZIL3_9STRA2.130e-10767.86Glycosyltransferase family 17-domain-containing pr... [more]
A0A835Z442_9STRA7.690e-7844.44Glycosyl transferase n=1 Tax=Tribonema minus TaxID... [more]
A0A835Z8R4_9STRA2.690e-5238.19Glycosyl transferase n=1 Tax=Tribonema minus TaxID... [more]
A0A835Z087_9STRA6.250e-4834.36Glycosyl transferase n=1 Tax=Tribonema minus TaxID... [more]
A0A835Z5R1_9STRA7.530e-3829.93Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835ZCH0_9STRA1.990e-3329.72Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835Z660_9STRA5.090e-3328.78Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A6C0I2Y0_9ZZZZ7.820e-2834.78Uncharacterized protein n=1 Tax=viral metagenome T... [more]
A0A6C0DKQ2_9ZZZZ3.410e-2530.04Uncharacterized protein n=1 Tax=viral metagenome T... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_18contigContig_18:1237930..1238754 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|161947|e_gw1.18.68.1
CAZyGT17
BRITEko00000,ko00001,ko00002,ko01000,ko01003
KEGG ReactionR05986
KEGG ModuleM00075
KEGG Pathwayko00510,ko01100,map00510,map01100
KEGG koko:K00737
EC2.4.1.144
Descriptionfamily 17
COG categoryI
Max annot lvl4751|Fungi
EggNOG OGs28HI1@1|root,2QPVW@2759|Eukaryota,39WVW@33154|Opisthokonta,3NUGT@4751|Fungi,3QNRS@4890|Ascomycota,214KW@147550|Sordariomycetes,1F0H7@1028384|Glomerellales
Evalue2.46e-25
Seed ortholog474922.ELA26509
Hectar predicted targeting categoryother localisation
TranscriptId162269
TrackFilteredModels1
ProteinId161947
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|161947gene_1492Tribonema minus UTEX_B_3156 geneContig_18 1237930..1238754 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_1492_1exon_1492_1Tribonema minus UTEX_B_3156 exonContig_18 1237930..1238754 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_1492CDS_1492Tribonema minus UTEX_B_3156 CDSContig_18 1237930..1238754 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|161947Trimin1|161947|e_gw1.18.68.1Tribonema minus UTEX_B_3156 polypeptideContig_18 1237930..1238754 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_1492 ID=mRNA_1492|Name=jgi.p|Trimin1|161947|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=825bp|location=Sequence derived from alignment at Contig_18:1237930..1238754+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGAAACTCATTGATGTGTTTTGTTTCAATGGCGAGCCAATACTAGAGCT
CAGGCTAGAGTATCTACAAGATGTTGTGGATGAGTTTGTGCTGGTGGAGA
GCAAGTATACCTTCTCTGGCAAGGTCAAGGACACATTTTACTGTGATGAT
TTAGTACAGCATCCCAAAGTCACTGTTCTCAGACTCGATTATGCACCGCC
TGTAGCGGATGAAGAATGGTGTCGTGAACGCAGCGGCTCTTCTTCTTTTA
TGGAAGAAGGGTGCATGGACCACTGGTTCCGTGAGCAGCATCAGCGAGAC
TACCCAAAATCATACATTGTGAACAAATACGCTGATGAGGATTACATTGT
CGTCTGCAGTGATGTAGATGAGATCCCTCGCAAAGAGTTGCTTGTGTCAC
TCAAGCAGCATGGAAACGGCCAGCTTCATACTCCTATCTACTTACACATG
GCAATGCTAATGTACAACATGGGTTGGCAAACTGATGAGCAGTGGTTGCG
GGCCTTTGTGATTAACAAAGAGGGTTTCTGCAACGCAGCTTCAGTAGACG
AGATGCGCCGCGCAGAGCCGTACCGCGTCGCACCTAACGGGGGCTGGCAC
TGTAGTTACTTTTTGAATAGCCGGGACTTGGCACGGAAAATCCAAGCATT
CTCACATCAAGAGTATAACAAACCAGAGTACACGGACACTGCGCATTGCC
AAAGGTGTCTCTTGAGTGGCAAAGATGTGCTCGGGCGTGGTGAGCTGAAG
GCATACACAGGCCAGGTGCCGGAGCTTTTTATAAAATTCAACGAGAAAAT
GTTGTTTCTGCAAAAATTCAGCTAA
back to top

protein sequence of jgi.p|Trimin1|161947

>Trimin1|161947|e_gw1.18.68.1 ID=Trimin1|161947|e_gw1.18.68.1|Name=jgi.p|Trimin1|161947|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=275bp
MKLIDVFCFNGEPILELRLEYLQDVVDEFVLVESKYTFSGKVKDTFYCDD
LVQHPKVTVLRLDYAPPVADEEWCRERSGSSSFMEEGCMDHWFREQHQRD
YPKSYIVNKYADEDYIVVCSDVDEIPRKELLVSLKQHGNGQLHTPIYLHM
AMLMYNMGWQTDEQWLRAFVINKEGFCNAASVDEMRRAEPYRVAPNGGWH
CSYFLNSRDLARKIQAFSHQEYNKPEYTDTAHCQRCLLSGKDVLGRGELK
AYTGQVPELFIKFNEKMLFLQKFS*
back to top

mRNA from alignment at Contig_18:1237930..1238754+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_1492 ID=mRNA_1492|Name=jgi.p|Trimin1|161947|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=825bp|location=Sequence derived from alignment at Contig_18:1237930..1238754+ (Tribonema minus UTEX_B_3156 )
ATGAAACTCATTGATGTGTTTTGTTTCAATGGCGAGCCAATACTAGAGCT CAGGCTAGAGTATCTACAAGATGTTGTGGATGAGTTTGTGCTGGTGGAGA GCAAGTATACCTTCTCTGGCAAGGTCAAGGACACATTTTACTGTGATGAT TTAGTACAGCATCCCAAAGTCACTGTTCTCAGACTCGATTATGCACCGCC TGTAGCGGATGAAGAATGGTGTCGTGAACGCAGCGGCTCTTCTTCTTTTA TGGAAGAAGGGTGCATGGACCACTGGTTCCGTGAGCAGCATCAGCGAGAC TACCCAAAATCATACATTGTGAACAAATACGCTGATGAGGATTACATTGT CGTCTGCAGTGATGTAGATGAGATCCCTCGCAAAGAGTTGCTTGTGTCAC TCAAGCAGCATGGAAACGGCCAGCTTCATACTCCTATCTACTTACACATG GCAATGCTAATGTACAACATGGGTTGGCAAACTGATGAGCAGTGGTTGCG GGCCTTTGTGATTAACAAAGAGGGTTTCTGCAACGCAGCTTCAGTAGACG AGATGCGCCGCGCAGAGCCGTACCGCGTCGCACCTAACGGGGGCTGGCAC TGTAGTTACTTTTTGAATAGCCGGGACTTGGCACGGAAAATCCAAGCATT CTCACATCAAGAGTATAACAAACCAGAGTACACGGACACTGCGCATTGCC AAAGGTGTCTCTTGAGTGGCAAAGATGTGCTCGGGCGTGGTGAGCTGAAG GCATACACAGGCCAGGTGCCGGAGCTTTTTATAAAATTCAACGAGAAAAT GTTGTTTCTGCAAAAATTCAGCTAA
back to top

Coding sequence (CDS) from alignment at Contig_18:1237930..1238754+

>mRNA_1492 ID=mRNA_1492|Name=jgi.p|Trimin1|161947|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=825bp|location=Sequence derived from alignment at Contig_18:1237930..1238754+ (Tribonema minus UTEX_B_3156 )
ATGAAACTCATTGATGTGTTTTGTTTCAATGGCGAGCCAATACTAGAGCT
CAGGCTAGAGTATCTACAAGATGTTGTGGATGAGTTTGTGCTGGTGGAGA
GCAAGTATACCTTCTCTGGCAAGGTCAAGGACACATTTTACTGTGATGAT
TTAGTACAGCATCCCAAAGTCACTGTTCTCAGACTCGATTATGCACCGCC
TGTAGCGGATGAAGAATGGTGTCGTGAACGCAGCGGCTCTTCTTCTTTTA
TGGAAGAAGGGTGCATGGACCACTGGTTCCGTGAGCAGCATCAGCGAGAC
TACCCAAAATCATACATTGTGAACAAATACGCTGATGAGGATTACATTGT
CGTCTGCAGTGATGTAGATGAGATCCCTCGCAAAGAGTTGCTTGTGTCAC
TCAAGCAGCATGGAAACGGCCAGCTTCATACTCCTATCTACTTACACATG
GCAATGCTAATGTACAACATGGGTTGGCAAACTGATGAGCAGTGGTTGCG
GGCCTTTGTGATTAACAAAGAGGGTTTCTGCAACGCAGCTTCAGTAGACG
AGATGCGCCGCGCAGAGCCGTACCGCGTCGCACCTAACGGGGGCTGGCAC
TGTAGTTACTTTTTGAATAGCCGGGACTTGGCACGGAAAATCCAAGCATT
CTCACATCAAGAGTATAACAAACCAGAGTACACGGACACTGCGCATTGCC
AAAGGTGTCTCTTGAGTGGCAAAGATGTGCTCGGGCGTGGTGAGCTGAAG
GCATACACAGGCCAGGTGCCGGAGCTTTTTATAAAATTCAACGAGAAAAT
GTTGTTTCTGCAAAAATTCAGCTAA
back to top