mRNA_14928 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|339752
Unique NamemRNA_14928
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|339752 vs. uniprot
Match: A0A835YGG8_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YGG8_9STRA)

HSP 1 Score: 431 bits (1107), Expect = 1.930e-151
Identity = 213/213 (100.00%), Postives = 213/213 (100.00%), Query Frame = 2 
Query:  218 MYWRVRSCHWWTAVCTAVNCAVGCYEVQLRSELQKCPPSRTSRMVLSTVRFCYERGGTLGGSAATHRGTETVTCPALCHQWVHERSSTTFMTLCAAVANASDAASESPHLAIEQSFTDIASGAATRTTRRVRQENFLDLGKRSCTSSSRVCGSTTTPSQKRSGINQYLGAIRGDPFQLPLSFDTLWSSCTESMMLSRRRRARPMQYWSSLDLL 856
            MYWRVRSCHWWTAVCTAVNCAVGCYEVQLRSELQKCPPSRTSRMVLSTVRFCYERGGTLGGSAATHRGTETVTCPALCHQWVHERSSTTFMTLCAAVANASDAASESPHLAIEQSFTDIASGAATRTTRRVRQENFLDLGKRSCTSSSRVCGSTTTPSQKRSGINQYLGAIRGDPFQLPLSFDTLWSSCTESMMLSRRRRARPMQYWSSLDLL
Sbjct:    1 MYWRVRSCHWWTAVCTAVNCAVGCYEVQLRSELQKCPPSRTSRMVLSTVRFCYERGGTLGGSAATHRGTETVTCPALCHQWVHERSSTTFMTLCAAVANASDAASESPHLAIEQSFTDIASGAATRTTRRVRQENFLDLGKRSCTSSSRVCGSTTTPSQKRSGINQYLGAIRGDPFQLPLSFDTLWSSCTESMMLSRRRRARPMQYWSSLDLL 213
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|339752 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A835YGG8_9STRA1.930e-151100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_98contigContig_98:443390..444248 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|339752|MIX48515_10_30
Hectar predicted targeting categorysignal peptide
TranscriptId340074
TrackFilteredModels1
ProteinId339752
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|339752gene_14928Tribonema minus UTEX_B_3156 geneContig_98 443390..444248 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_14928_1exon_14928_1Tribonema minus UTEX_B_3156 exonContig_98 443390..444248 +


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR5_14928UTR5_14928Tribonema minus UTEX_B_3156 five_prime_UTRContig_98 443390..443606 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_14928CDS_14928Tribonema minus UTEX_B_3156 CDSContig_98 443607..444248 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|339752Trimin1|339752|MIX48515_10_30Tribonema minus UTEX_B_3156 polypeptideContig_98 443607..444248 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_14928 ID=mRNA_14928|Name=jgi.p|Trimin1|339752|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=859bp|location=Sequence derived from alignment at Contig_98:443390..444248+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
CGTGATGATAACTATTGGGCTAGGTGCGGACTGAAAGCATCATCAATGAT
TATGATGTCTTGTTGGTTTTGCATGTTCAGCGCTATCGCGCGCAGGCTGC
GATGCACCGGAGGCACGCGCGTGGCTGCTTGTGCGTCAAGCGCTCTCGAT
GTATGTTGTTCAACTTGAAGGTATCTGCACGGGAGAGGCCTGCTGCCGTG
CGCAGTACTGAGCTGTCATGTACTGGCGTGTACGGTCATGCCATTGGTGG
ACTGCGGTGTGCACTGCTGTGAACTGCGCTGTGGGCTGCTATGAAGTTCA
ACTGCGCAGTGAATTGCAAAAGTGTCCACCGAGTCGCACATCACGTATGG
TGCTCAGCACCGTACGGTTCTGTTATGAGCGGGGGGGAACTCTCGGAGGC
TCTGCTGCCACGCACCGTGGTACTGAAACTGTCACTTGCCCGGCACTATG
CCACCAGTGGGTTCATGAGCGCTCTTCAACTACATTCATGACGCTATGTG
CTGCGGTCGCGAATGCGTCGGACGCAGCGTCCGAGTCGCCGCACTTGGCA
ATTGAGCAGTCCTTCACGGACATCGCGAGCGGCGCAGCGACTCGGACAAC
GCGGCGCGTGCGGCAGGAGAATTTTTTAGATCTGGGGAAACGTTCCTGTA
CTAGTAGTAGCCGCGTGTGCGGCAGTACTACAACACCATCACAGAAACGG
AGCGGCATCAACCAATACCTAGGCGCCATACGAGGAGATCCATTTCAACT
TCCACTCTCTTTTGACACTTTGTGGTCGTCATGTACTGAATCAATGATGC
TCAGCAGGCGACGCCGCGCTCGTCCTATGCAGTACTGGTCGTCTTTAGAT
TTACTATAG
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protein sequence of jgi.p|Trimin1|339752

>Trimin1|339752|MIX48515_10_30 ID=Trimin1|339752|MIX48515_10_30|Name=jgi.p|Trimin1|339752|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=214bp
MYWRVRSCHWWTAVCTAVNCAVGCYEVQLRSELQKCPPSRTSRMVLSTVR
FCYERGGTLGGSAATHRGTETVTCPALCHQWVHERSSTTFMTLCAAVANA
SDAASESPHLAIEQSFTDIASGAATRTTRRVRQENFLDLGKRSCTSSSRV
CGSTTTPSQKRSGINQYLGAIRGDPFQLPLSFDTLWSSCTESMMLSRRRR
ARPMQYWSSLDLL*
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mRNA from alignment at Contig_98:443390..444248+

Legend: exonfive_prime_UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_14928 ID=mRNA_14928|Name=jgi.p|Trimin1|339752|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=859bp|location=Sequence derived from alignment at Contig_98:443390..444248+ (Tribonema minus UTEX_B_3156 )
CGTGATGATAACTATTGGGCTAGGTGCGGACTGAAAGCATCATCAATGAT
TATGATGTCTTGTTGGTTTTGCATGTTCAGCGCTATCGCGCGCAGGCTGC
GATGCACCGGAGGCACGCGCGTGGCTGCTTGTGCGTCAAGCGCTCTCGAT
GTATGTTGTTCAACTTGAAGGTATCTGCACGGGAGAGGCCTGCTGCCGTG
CGCAGTACTGAGCTGTCATGTACTGGCGTGTACGGTCATGCCATTGGTGG
ACTGCGGTGTGCACTGCTGTGAACTGCGCTGTGGGCTGCTATGAAGTTCA
ACTGCGCAGTGAATTGCAAAAGTGTCCACCGAGTCGCACATCACGTATGG
TGCTCAGCACCGTACGGTTCTGTTATGAGCGGGGGGGAACTCTCGGAGGC
TCTGCTGCCACGCACCGTGGTACTGAAACTGTCACTTGCCCGGCACTATG
CCACCAGTGGGTTCATGAGCGCTCTTCAACTACATTCATGACGCTATGTG
CTGCGGTCGCGAATGCGTCGGACGCAGCGTCCGAGTCGCCGCACTTGGCA
ATTGAGCAGTCCTTCACGGACATCGCGAGCGGCGCAGCGACTCGGACAAC
GCGGCGCGTGCGGCAGGAGAATTTTTTAGATCTGGGGAAACGTTCCTGTA
CTAGTAGTAGCCGCGTGTGCGGCAGTACTACAACACCATCACAGAAACGG
AGCGGCATCAACCAATACCTAGGCGCCATACGAGGAGATCCATTTCAACT
TCCACTCTCTTTTGACACTTTGTGGTCGTCATGTACTGAATCAATGATGC
TCAGCAGGCGACGCCGCGCTCGTCCTATGCAGTACTGGTCGTCTTTAGAT
TTACTATAG
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Coding sequence (CDS) from alignment at Contig_98:443390..444248+

>mRNA_14928 ID=mRNA_14928|Name=jgi.p|Trimin1|339752|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=642bp|location=Sequence derived from alignment at Contig_98:443390..444248+ (Tribonema minus UTEX_B_3156 )
ATGTACTGGCGTGTACGGTCATGCCATTGGTGGACTGCGGTGTGCACTGC
TGTGAACTGCGCTGTGGGCTGCTATGAAGTTCAACTGCGCAGTGAATTGC
AAAAGTGTCCACCGAGTCGCACATCACGTATGGTGCTCAGCACCGTACGG
TTCTGTTATGAGCGGGGGGGAACTCTCGGAGGCTCTGCTGCCACGCACCG
TGGTACTGAAACTGTCACTTGCCCGGCACTATGCCACCAGTGGGTTCATG
AGCGCTCTTCAACTACATTCATGACGCTATGTGCTGCGGTCGCGAATGCG
TCGGACGCAGCGTCCGAGTCGCCGCACTTGGCAATTGAGCAGTCCTTCAC
GGACATCGCGAGCGGCGCAGCGACTCGGACAACGCGGCGCGTGCGGCAGG
AGAATTTTTTAGATCTGGGGAAACGTTCCTGTACTAGTAGTAGCCGCGTG
TGCGGCAGTACTACAACACCATCACAGAAACGGAGCGGCATCAACCAATA
CCTAGGCGCCATACGAGGAGATCCATTTCAACTTCCACTCTCTTTTGACA
CTTTGTGGTCGTCATGTACTGAATCAATGATGCTCAGCAGGCGACGCCGC
GCTCGTCCTATGCAGTACTGGTCGTCTTTAGATTTACTATAG
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