mRNA_14926 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|146713
Unique NamemRNA_14926
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|146713 vs. uniprot
Match: A0A836C7K4_9STRA (Ankyrin repeat-containing domain protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C7K4_9STRA)

HSP 1 Score: 113 bits (282), Expect = 3.410e-31
Identity = 80/80 (100.00%), Postives = 80/80 (100.00%), Query Frame = 1 
Query:    1 SRLHGCAVVGDLANTLSQLEQGADLEGQSFCGRTALHYAAFYGHASVVRALLVXXXXXXXXXXXXXXXXXXXXXKGVSCA 240
            SRLHGCAVVGDLANTLSQLEQGADLEGQSFCGRTALHYAAFYGHASVVRALLVXXXXXXXXXXXXXXXXXXXXXKGVSCA
Sbjct:    1 SRLHGCAVVGDLANTLSQLEQGADLEGQSFCGRTALHYAAFYGHASVVRALLVXXXXXXXXXXXXXXXXXXXXXKGVSCA 80
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BLAST of jgi.p|Trimin1|146713 vs. uniprot
Match: A0A6H5JU77_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JU77_9PHAE)

HSP 1 Score: 53.5 bits (127), Expect = 2.110e-6
Identity = 25/40 (62.50%), Postives = 30/40 (75.00%), Query Frame = 1 
Query:    4 RLHGCAVVGDLANTLSQLEQGADLEGQSFCGRTALHYAAF 123
            +LH  +VVGDLA     ++ G +LE QSFCGRTALHYAAF
Sbjct:  380 QLHKASVVGDLAAISRFIKDGGNLEAQSFCGRTALHYAAF 419
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|146713 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A836C7K4_9STRA3.410e-31100.00Ankyrin repeat-containing domain protein (Fragment... [more]
A0A6H5JU77_9PHAE2.110e-662.50Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_98contigContig_98:435620..435859 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|146713|gw1.98.40.1
Descriptionankyrin repeat
COG categoryM
Max annot lvl4751|Fungi
EggNOG OGsCOG0666@1|root,KOG4177@2759|Eukaryota,38BVK@33154|Opisthokonta,3P0CS@4751|Fungi,3QQN4@4890|Ascomycota,218IW@147550|Sordariomycetes
Evalue0.000254
Seed ortholog1173701.A0A066XTY2
Hectar predicted targeting categoryother localisation
TranscriptId147035
TrackFilteredModels1
ProteinId146713
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|146713gene_14926Tribonema minus UTEX_B_3156 geneContig_98 435620..435859 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_14926_1exon_14926_1Tribonema minus UTEX_B_3156 exonContig_98 435620..435859 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_14926CDS_14926Tribonema minus UTEX_B_3156 CDSContig_98 435620..435859 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|146713Trimin1|146713|gw1.98.40.1Tribonema minus UTEX_B_3156 polypeptideContig_98 435620..435859 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_14926 ID=mRNA_14926|Name=jgi.p|Trimin1|146713|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=240bp|location=Sequence derived from alignment at Contig_98:435620..435859+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
AGCAGGCTGCATGGTTGCGCTGTGGTGGGCGACCTGGCGAACACGTTGAG
CCAGCTCGAACAAGGCGCTGATCTCGAAGGCCAGAGCTTCTGTGGCAGGA
CGGCCCTGCACTACGCGGCTTTCTATGGCCATGCCTCGGTGGTGCGCGCA
CTGCTCGTGGCAGGCGCTGACGCCAATTCGCCGGGGGGCGGCCGCTCGTC
CGCCTTGCACTTCGCTGCGTACAAAGGTGTGAGCTGTGCA
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protein sequence of jgi.p|Trimin1|146713

>Trimin1|146713|gw1.98.40.1 ID=Trimin1|146713|gw1.98.40.1|Name=jgi.p|Trimin1|146713|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=80bp
SRLHGCAVVGDLANTLSQLEQGADLEGQSFCGRTALHYAAFYGHASVVRA
LLVAGADANSPGGGRSSALHFAAYKGVSCA
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mRNA from alignment at Contig_98:435620..435859+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_14926 ID=mRNA_14926|Name=jgi.p|Trimin1|146713|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=240bp|location=Sequence derived from alignment at Contig_98:435620..435859+ (Tribonema minus UTEX_B_3156 )
AGCAGGCTGCATGGTTGCGCTGTGGTGGGCGACCTGGCGAACACGTTGAG
CCAGCTCGAACAAGGCGCTGATCTCGAAGGCCAGAGCTTCTGTGGCAGGA
CGGCCCTGCACTACGCGGCTTTCTATGGCCATGCCTCGGTGGTGCGCGCA
CTGCTCGTGGCAGGCGCTGACGCCAATTCGCCGGGGGGCGGCCGCTCGTC
CGCCTTGCACTTCGCTGCGTACAAAGGTGTGAGCTGTGCA
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Coding sequence (CDS) from alignment at Contig_98:435620..435859+

>mRNA_14926 ID=mRNA_14926|Name=jgi.p|Trimin1|146713|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=240bp|location=Sequence derived from alignment at Contig_98:435620..435859+ (Tribonema minus UTEX_B_3156 )
AGCAGGCTGCATGGTTGCGCTGTGGTGGGCGACCTGGCGAACACGTTGAG
CCAGCTCGAACAAGGCGCTGATCTCGAAGGCCAGAGCTTCTGTGGCAGGA
CGGCCCTGCACTACGCGGCTTTCTATGGCCATGCCTCGGTGGTGCGCGCA
CTGCTCGTGGCAGGCGCTGACGCCAATTCGCCGGGGGGCGGCCGCTCGTC
CGCCTTGCACTTCGCTGCGTACAAAGGTGTGAGCTGTGCA
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