mRNA_14913 (mRNA) Tribonema minus UTEX_B_3156
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of jgi.p|Trimin1|101569 vs. uniprot
Match: A0A835YGF7_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YGF7_9STRA) HSP 1 Score: 402 bits (1034), Expect = 6.520e-141 Identity = 210/210 (100.00%), Postives = 210/210 (100.00%), Query Frame = 1 Query: 58 MQRAVACTAARTLRRLGKQRLAEAHAGAAWRLSSSLSEPGSHSYGETPSTVNELSSARSALEKSCYFKIDFKIDEDATVYEAVQRFAAYNIGALAVTDKGGKVVGIISERDYVCKIALLGRQSQTTKVKEVATMGANIIVAKKSDSLHDCMRKMLARDIRHLPVLDEESGTVVGMLSIKDLIKEVAHEKEALIAKLKDFKLGRGGFFEHT 687
MQRAVACTAARTLRRLGKQRLAEAHAGAAWRLSSSLSEPGSHSYGETPSTVNELSSARSALEKSCYFKIDFKIDEDATVYEAVQRFAAYNIGALAVTDKGGKVVGIISERDYVCKIALLGRQSQTTKVKEVATMGANIIVAKKSDSLHDCMRKMLARDIRHLPVLDEESGTVVGMLSIKDLIKEVAHEKEALIAKLKDFKLGRGGFFEHT
Sbjct: 1 MQRAVACTAARTLRRLGKQRLAEAHAGAAWRLSSSLSEPGSHSYGETPSTVNELSSARSALEKSCYFKIDFKIDEDATVYEAVQRFAAYNIGALAVTDKGGKVVGIISERDYVCKIALLGRQSQTTKVKEVATMGANIIVAKKSDSLHDCMRKMLARDIRHLPVLDEESGTVVGMLSIKDLIKEVAHEKEALIAKLKDFKLGRGGFFEHT 210
BLAST of jgi.p|Trimin1|101569 vs. uniprot
Match: D7G770_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G770_ECTSI) HSP 1 Score: 255 bits (651), Expect = 1.230e-82 Identity = 123/177 (69.49%), Postives = 150/177 (84.75%), Query Frame = 1 Query: 157 SSLSEPGSHSYGETPSTVNELSSARSALEKSCYFKIDFKIDEDATVYEAVQRFAAYNIGALAVTDKGGKVVGIISERDYVCKIALLGRQSQTTKVKEVATMGANIIVAKKSDSLHDCMRKMLARDIRHLPVLDEESGTVVGMLSIKDLIKEVAHEKEALIAKLKDFKLGRGGFFEHT 687
SS+S+P +YGE +TV SSA+ AL+KSCYFKIDF I E+ATVYEAVQRFAAYNIGALAVT+ KV+GI+SERDYV K+ALLG+ S++T VKE+ATMGAN+++A KSD++ DCM KM+ARDIRHLPV+DEE G VVGMLS+KDL+KEV EKE ++ K+ DFKLGRGGFFEHT
Sbjct: 34 SSMSDPKPRNYGEVATTVENRSSAKDALQKSCYFKIDFGISEEATVYEAVQRFAAYNIGALAVTNDDKKVIGIVSERDYVSKVALLGKASKSTPVKEIATMGANLVIASKSDTMQDCMAKMVARDIRHLPVVDEEKGQVVGMLSVKDLLKEVTREKEEILTKVTDFKLGRGGFFEHT 210
BLAST of jgi.p|Trimin1|101569 vs. uniprot
Match: A0A7S1XTH5_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XTH5_9STRA) HSP 1 Score: 224 bits (570), Expect = 1.120e-70 Identity = 111/167 (66.47%), Postives = 134/167 (80.24%), Query Frame = 1 Query: 187 YGETPSTVNELSSARSALEKSCYFKIDFKIDEDATVYEAVQRFAAYNIGALAVTDKGGKVVGIISERDYVCKIALLGRQSQTTKVKEVATMGANIIVAKKSDSLHDCMRKMLARDIRHLPVLDEESGTVVGMLSIKDLIKEVAHEKEALIAKLKDFKLGRGGFFEHT 687
YG+ P + S+A +A EKSCYFKIDFKI +DA+VYEAVQ+FAAYNIG L V KG +V GIISERDYV KIALLGR+S TKV EV T GAN++VA+ +DS+ +CM KMLARDIRHLPV++EE+G VVGMLS+KDLIKE+ EK+ +I KL DF +GRG FFEH
Sbjct: 22 YGDAPEDIGHSSTASTAWEKSCYFKIDFKISQDASVYEAVQKFAAYNIGCLVVM-KGDEVAGIISERDYVTKIALLGRKSVDTKVSEVCTSGANMVVARTTDSVQECMGKMLARDIRHLPVVEEETGQVVGMLSVKDLIKELVKEKDEIITKLTDFTMGRGAFFEHV 187
BLAST of jgi.p|Trimin1|101569 vs. uniprot
Match: A0A7S1U998_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1U998_9STRA) HSP 1 Score: 225 bits (573), Expect = 8.480e-70 Identity = 118/187 (63.10%), Postives = 143/187 (76.47%), Query Frame = 1 Query: 133 AGAAWRLSSSLSEPG--SHSYGETPSTVNELSSARSALEKSCYFKIDFKIDEDATVYEAVQRFAAYNIGALAVTDKGGKVVGIISERDYVCKIALLGRQSQTTKVKEVATMGANIIVAKKSDSLHDCMRKMLARDIRHLPVLDEESGTVVGMLSIKDLIKEVAHEKEALIAKLKDFKLGRGGFFEHT 687
A A R SS+S+P YG+ P + S+A +A EKSCYFKIDFKI +DA+VYEAVQ+FAAYNIG L V KG +V GIISERDYV KIALLGR+S TKV EV T GAN++VA+ +DS+ +CM KMLARDIRHLPV++EE+G VVGMLS+KDLIKE+ EK+ +I KL DF +GRG FFEH
Sbjct: 98 AAPAVRAWSSMSDPTYMQRRYGDAPEDIGHSSTASTAWEKSCYFKIDFKISQDASVYEAVQKFAAYNIGCLVVM-KGDEVAGIISERDYVTKIALLGRKSVDTKVSEVCTSGANMVVARTTDSVQECMGKMLARDIRHLPVVEEETGQVVGMLSVKDLIKELVKEKDEIITKLTDFTMGRGAFFEHV 283
BLAST of jgi.p|Trimin1|101569 vs. uniprot
Match: A0A4D9D580_9STRA (CBS domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D580_9STRA) HSP 1 Score: 216 bits (549), Expect = 3.600e-67 Identity = 112/178 (62.92%), Postives = 138/178 (77.53%), Query Frame = 1 Query: 157 SSLSEPG--SHSYGETPSTVNELSSARSALEKSCYFKIDFKIDEDATVYEAVQRFAAYNIGALAVTDKGGKVVGIISERDYVCKIALLGRQSQTTKVKEVATMGANIIVAKKSDSLHDCMRKMLARDIRHLPVLDEESGTVVGMLSIKDLIKEVAHEKEALIAKLKDFKLGRGGFFEH 684
SSLSEP S Y + P+++ E +A++A EKSCYFKIDFKI E+A +YEAVQRFAAYNIGALAVTD+ GKV+G+ISERDYVCK +T V EV T G+NI+VAK +DS+ CM+KMLA+DIRHLPV+D+E VVGMLSIKDLIKE+ EK+ +I KL DF LG+G FF+H
Sbjct: 41 SSLSEPSYLSRPYKDIPASIGEKGTAQTAWEKSCYFKIDFKIPEEAMMYEAVQRFAAYNIGALAVTDQEGKVIGVISERDYVCK---------STTVGEVCTRGSNIVVAKTTDSIATCMKKMLAKDIRHLPVVDDEKKEVVGMLSIKDLIKELQKEKDDIIEKLTDFNLGKGAFFQH 209
BLAST of jgi.p|Trimin1|101569 vs. uniprot
Match: A0A7R9UAT3_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9UAT3_9STRA) HSP 1 Score: 211 bits (538), Expect = 2.690e-65 Identity = 107/156 (68.59%), Postives = 125/156 (80.13%), Query Frame = 1 Query: 220 SSARSALEKSCYFKIDFKIDEDATVYEAVQRFAAYNIGALAVTDKGGKVVGIISERDYVCKIALLGRQSQTTKVKEVATMGANIIVAKKSDSLHDCMRKMLARDIRHLPVLDEESGTVVGMLSIKDLIKEVAHEKEALIAKLKDFKLGRGGFFEHT 687
S+A +A EKSCYFKIDFKIDEDA+VYEAVQRFAAYNIG L V K GKV GIISERDYV K+ALLGR+S KV E+ T AN++VA SDS+ DCM MLARDIRHLPV+ E+ G VVGMLS+KDLIKE+ EK+ +I+KL DF +GRG +FEH
Sbjct: 71 STASNAWEKSCYFKIDFKIDEDASVYEAVQRFAAYNIGCLVVVSKEGKVAGIISERDYVTKVALLGRKSVDVKVSEICTSEANMVVANTSDSVQDCMGMMLARDIRHLPVVGED-GDVVGMLSVKDLIKELVKEKDEMISKLTDFTMGRGAYFEHV 225
BLAST of jgi.p|Trimin1|101569 vs. uniprot
Match: A0A6C0H1P6_9ZZZZ (Uncharacterized protein n=1 Tax=viral metagenome TaxID=1070528 RepID=A0A6C0H1P6_9ZZZZ) HSP 1 Score: 187 bits (476), Expect = 1.140e-56 Identity = 90/152 (59.21%), Postives = 114/152 (75.00%), Query Frame = 1 Query: 223 SARSALEKSCYFKIDFKIDEDATVYEAVQRFAAYNIGALAVTDKGGKVVGIISERDYVCKIALLGRQSQTTKVKEVATMGANIIVAKKSDSLHDCMRKMLARDIRHLPVLDEESGTVVGMLSIKDLIKEVAHEKEALIAKLKDFKLGRGGFF 678
SA S + SCY KIDFKI E+ TV A+QRF A+NIG LAVTD KVVG++SERDYV K+A LG+ K+KE+ T G +II+AKK DSL CM KML +DIRHL V+D+++ VGM+SIKDLIKE+ +K+ +I +L DFKLG+GGFF
Sbjct: 17 SALSVFKNSCYHKIDFKISEENTVNSAIQRFTAFNIGCLAVTDSANKVVGVLSERDYVNKVAALGKNGDVVKIKEICTYGPHIIIAKKDDSLEQCMNKMLFKDIRHLLVIDDKNEEFVGMISIKDLIKEIMKDKDDMITRLTDFKLGKGGFF 168
BLAST of jgi.p|Trimin1|101569 vs. uniprot
Match: A0A7S3LGV2_9STRA (Hypothetical protein (Fragment) n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3LGV2_9STRA) HSP 1 Score: 188 bits (477), Expect = 1.390e-56 Identity = 94/158 (59.49%), Postives = 120/158 (75.95%), Query Frame = 1 Query: 205 TVNELSSARSALEKSCYFKIDFKIDEDATVYEAVQRFAAYNIGALAVTDKGGKVVGIISERDYVCKIALLGRQSQTTKVKEVATMGANIIVAKKSDSLHDCMRKMLARDIRHLPVLDEESGTVVGMLSIKDLIKEVAHEKEALIAKLKDFKLGRGGFF 678
TV++ ++ R AL+ S Y +IDF I EDA VY+AVQ+FAA+NIG L VTDK G + GI+SERDY+CKIALLGR S+ T VKE+AT GANII AK +++ CM KM+ + IRHLP++D+ S TV+GM+SIKDL+K V EKE I L DF LG+GG F
Sbjct: 31 TVSDAATVRDALKFSGYSEIDFTIPEDAKVYDAVQKFAAFNIGCLVVTDKAGNMTGIVSERDYICKIALLGRTSKETPVKEIATAGANIITAKSDETVEVCMEKMMQKGIRHLPIVDD-SETVIGMVSIKDLVKTVVQEKEDTIKVLSDFALGKGGHF 187
BLAST of jgi.p|Trimin1|101569 vs. uniprot
Match: A0A1Z5KQF6_FISSO (CBS domain-containing protein n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5KQF6_FISSO) HSP 1 Score: 187 bits (474), Expect = 3.580e-56 Identity = 93/158 (58.86%), Postives = 121/158 (76.58%), Query Frame = 1 Query: 205 TVNELSSARSALEKSCYFKIDFKIDEDATVYEAVQRFAAYNIGALAVTDKGGKVVGIISERDYVCKIALLGRQSQTTKVKEVATMGANIIVAKKSDSLHDCMRKMLARDIRHLPVLDEESGTVVGMLSIKDLIKEVAHEKEALIAKLKDFKLGRGGFF 678
TV ++S+A ALE S Y +I+FKIDEDA VY+AVQRFAA NIG L TDK G + GIISERDY+CK+ALLGR S+ T ++E++T GANII AK ++++ CM KM+ + IRHLPV+D+ +G+V G++SIKDL+K V EKE I L DF LG+GG F
Sbjct: 26 TVADVSTADDALELSGYKEINFKIDEDAMVYDAVQRFAANNIGCLVTTDKAGNMTGIISERDYICKVALLGRTSKETPIREISTRGANIITAKGNETVETCMEKMMTKGIRHLPVVDD-AGSVTGLISIKDLVKTVVSEKEKTIKVLSDFALGKGGHF 182
BLAST of jgi.p|Trimin1|101569 vs. uniprot
Match: A0A7S2XS19_9STRA (Hypothetical protein n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2XS19_9STRA) HSP 1 Score: 187 bits (474), Expect = 1.640e-55 Identity = 95/158 (60.13%), Postives = 116/158 (73.42%), Query Frame = 1 Query: 205 TVNELSSARSALEKSCYFKIDFKIDEDATVYEAVQRFAAYNIGALAVTDKGGKVVGIISERDYVCKIALLGRQSQTTKVKEVATMGANIIVAKKSDSLHDCMRKMLARDIRHLPVLDEESGTVVGMLSIKDLIKEVAHEKEALIAKLKDFKLGRGGFF 678
TV E A A +KSCY IDF I EDATVY+AVQRF+AY+IGAL TD G + G++SERDYV KIALLG+ S+ TK+ E++T AN+I A DS+ CM KML+RDIRHLP+LD++ G VVGMLSIKDL+K + EKE I L DF LG+GG F
Sbjct: 75 TVEEEVLASDAFKKSCYVAIDFTIAEDATVYDAVQRFSAYDIGALVTTDTDGSIAGVVSERDYVTKIALLGKTSKDTKISEISTKSANLITASPKDSIEICMGKMLSRDIRHLPLLDDD-GKVVGMLSIKDLVKALVAEKEKTIQVLSDFALGKGGHF 231 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|101569 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_14913 ID=mRNA_14913|Name=jgi.p|Trimin1|101569|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=764bp|location=Sequence derived from alignment at Contig_98:320643..326285+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. GGCAGCTCTTGGAGGAGGGCGAGGAAGCACCAGGAAGCAGAGGCGAGCTGback to top protein sequence of jgi.p|Trimin1|101569 >Trimin1|101569|CE101568_29 ID=Trimin1|101569|CE101568_29|Name=jgi.p|Trimin1|101569|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=211bp MQRAVACTAARTLRRLGKQRLAEAHAGAAWRLSSSLSEPGSHSYGETPSTback to top mRNA from alignment at Contig_98:320643..326285+ Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_14913 ID=mRNA_14913|Name=jgi.p|Trimin1|101569|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=5643bp|location=Sequence derived from alignment at Contig_98:320643..326285+ (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_98:320643..326285+ >mRNA_14913 ID=mRNA_14913|Name=jgi.p|Trimin1|101569|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=633bp|location=Sequence derived from alignment at Contig_98:320643..326285+ (Tribonema minus UTEX_B_3156 )back to top |