mRNA_14911 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	jgi.p\|Trimin1\|351713
Unique Name	mRNA_14911
Type	mRNA
Organism	Tribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )

Homology

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BLAST of jgi.p|Trimin1|351713 vs. uniprot
Match: A0A836C7K0_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C7K0_9STRA)

HSP 1 Score: 172 bits (435), Expect = 5.010e-52
Identity = 114/114 (100.00%), Postives = 114/114 (100.00%), Query Frame = 1

Query:   37 MARVMFFALVALLVAAASAFVMPAAPRSLPTRQVASSGVADALASDIDYESQIKTMELEATERIKKAFDTAIVXXXXXXXXXXXXXXXXSDAEAKERWAKLEGEMKAAAASVGL 378
            MARVMFFALVALLVAAASAFVMPAAPRSLPTRQVASSGVADALASDIDYESQIKTMELEATERIKKAFDTAIVXXXXXXXXXXXXXXXXSDAEAKERWAKLEGEMKAAAASVGL
Sbjct:    1 MARVMFFALVALLVAAASAFVMPAAPRSLPTRQVASSGVADALASDIDYESQIKTMELEATERIKKAFDTAIVXXXXXXXXXXXXXXXXSDAEAKERWAKLEGEMKAAAASVGL 114

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BLAST of jgi.p|Trimin1|351713 vs. uniprot
Match: A0A835YUP5_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YUP5_9STRA)

HSP 1 Score: 104 bits (260), Expect = 9.060e-26
Identity = 65/104 (62.50%), Postives = 73/104 (70.19%), Query Frame = 1

Query:   70 LLVAAASAFVMPAAPR-SLPTRQVASSGVADALASDIDYESQIKTMELEATERIKKAFDTAIVXXXXXXXXXXXXXXXXSDAEAKERWAKLEGEMKAAAASVGL 378
            LL A ASAF+MPAAPR    T QVAS+ VADA+++DIDYESQIK ME+EA ERIKKAFD A V                SDAEAKERWA LE +M+ AAASVGL
Sbjct:   10 LLAAGASAFIMPAAPRVPAVTCQVASAAVADAVSTDIDYESQIKKMEMEAKERIKKAFDEATVK---------------SDAEAKERWAALEEDMRKAAASVGL 98

The following BLAST results are available for this feature:

BLAST of jgi.p|Trimin1|351713 vs. uniprot

BLAST of jgi.p|Trimin1|351713 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2


Match Name	E-value	Identity	Description
A0A836C7K0_9STRA	5.010e-52	100.00	Uncharacterized protein n=1 Tax=Tribonema minus Ta...	[more]
A0A835YUP5_9STRA	9.060e-26	62.50	Uncharacterized protein n=1 Tax=Tribonema minus Ta...	[more]

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Contig_98	contig	Contig_98:312804..316239 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
OGS1.0 of Tribonema minus UTEX_B_3156	2021-06-17

Properties


Property Name	Value
ProteomeId	Trimin1\|351713\|estExt_Genemark1.C_Ctg_980034
Hectar predicted targeting category	chloroplast
TranscriptId	352035
Track	FilteredModels1
ProteinId	351713

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
jgi.p\|Trimin1\|351713	gene_14911	Tribonema minus UTEX_B_3156	gene	Contig_98 312804..316239 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
jgi.p\|Trimin1\|351713	Trimin1\|351713\|estExt_Genemark1.C_Ctg_980034	Tribonema minus UTEX_B_3156	polypeptide	Contig_98 313468..316012 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
exon_14911_1	exon_14911_1	Tribonema minus UTEX_B_3156	exon	Contig_98 312804..312828 +
exon_14911_2	exon_14911_2	Tribonema minus UTEX_B_3156	exon	Contig_98 313457..313638 +
exon_14911_3	exon_14911_3	Tribonema minus UTEX_B_3156	exon	Contig_98 315746..315790 +
exon_14911_4	exon_14911_4	Tribonema minus UTEX_B_3156	exon	Contig_98 315884..316239 +

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
UTR5_14911	UTR5_14911	Tribonema minus UTEX_B_3156	five_prime_UTR	Contig_98 312804..312828 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
CDS_14911	CDS_14911	Tribonema minus UTEX_B_3156	CDS	Contig_98 313468..313638 +

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
UTR3_14911	UTR3_14911	Tribonema minus UTEX_B_3156	three_prime_UTR	Contig_98 316013..316239 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Contig_98:312804..316239+
coding sequence from alignment at Contig_98:312804..316239+

spliced messenger RNA

>mRNA_14911 ID=mRNA_14911|Name=jgi.p|Trimin1|351713|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=608bp|location=Sequence derived from alignment at Contig_98:312804..316239+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
TAAAGGTCTTCCAGCAACCCACCAGGCTTATATACAATGGCTCGCGTCAT
GTTCTTTGCCTTGGTGGCTCTGCTGGTGGCCGCGGCCAGCGCCTTCGTCA
TGCCTGCCGCCCCTCGGTCCCTCCCCACCCGGCAAGTGGCGTCCTCCGGT
GTAGCAGACGCCCTGGCATCGGACATCGACTACGAGTCCCAGATCAAGAC
GATGGAGTTGGAGGCCACGGAGCGCATCAAGAAAGCCTTCGACACGGCGA
TCGTGGAGGCCAAGGAGCGCATCAAGAAGGCATTTGACGAGGCAACCGTC
AAGTCGGACGCGGAGGCGAAGGAGCGGTGGGCGAAGCTCGAGGGCGAGAT
GAAGGCGGCCGCCGCCAGCGTCGGCCTCTAAACTTCAAGTTCAGCTTCAT
CAGCTTTCTAAACTTCAAGTTCAACTTCATCAGCTCTCCGCACCTCCAAC
AAAATCGGTTGAACTTTACGTGCCGACTGGAACAAGACGCTGTGATTTTG
TCGCTCTCGCTTCTTCGAACGCAACCCCCCCCAGCCCTACCACACATACC
CTCTTGCGTGCTAGAACCGCCTCTAAACAAACCATAAAACAAACCAATTT
TTCTCATA

protein sequence of jgi.p|Trimin1|351713

>Trimin1|351713|estExt_Genemark1.C_Ctg_980034 ID=Trimin1|351713|estExt_Genemark1.C_Ctg_980034|Name=jgi.p|Trimin1|351713|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=115bp
MARVMFFALVALLVAAASAFVMPAAPRSLPTRQVASSGVADALASDIDYE
SQIKTMELEATERIKKAFDTAIVEAKERIKKAFDEATVKSDAEAKERWAK
LEGEMKAAAASVGL*

mRNA from alignment at Contig_98:312804..316239+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_14911 ID=mRNA_14911|Name=jgi.p|Trimin1|351713|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=3436bp|location=Sequence derived from alignment at Contig_98:312804..316239+ (Tribonema minus UTEX_B_3156 )
TAAAGGTCTTCCAGCAACCCACCAGGTGAGGCTGTGCACCTGAGAGGCGT
AGCGCCTGCTTTCGTGGTTGCCTTGCCGAGGGATGGTCGGAGCAGCGATG
CGCGCCAGGCGTGTAGGGTCTTGAGGTGACGTTGTGGAAAGGCGAGCACG
CGCCAGGCCAGGCGCTAGCCGTGGACCTTGCAGTGCAGACACAGCCCCGG
ATACGTCGGCGCAGCTGCCTACGCATCTTGCGCCGCGGGGTCAGGCTGCT
GCGGCGCGGGGCTGGGGAAAGGCAGGATGCCACCACCTGCCGGGCTGGGA
GCATGCATGCCAACAGCTGCGAGGCGGTTCATTCGGGATAGGACGGTAGC
TGGTGTGGCGTTGCGTGATGGCCTCGCTGTTCGGCTGCACGCGGCGCCGT
GAAGGCTTGCAGAGCGTCTGAGAGGCCCCTGATAGTCGTGGGAGGGCAAC
CCTTGGTGCGAACCAGGAACGCCACCGGTTGGAGTCATACAACGCGCTGC
GGCGCTGTGGCCTTCTCTCGTCATCGAGATTTTGTAGAGCATATGCCACG
AAGCTGCTGGGACTTCTGGCGAGCCAGCGCACAGACAGGCTCGGTCAGCC
CCACCGTGCACCTCACACAGATTCGCCAACCCTTTTGGTGCCGCTTGCCG
CAGGCTTATATACAATGGCTCGCGTCATGTTCTTTGCCTTGGTGGCTCTG
CTGGTGGCCGCGGCCAGCGCCTTCGTCATGCCTGCCGCCCCTCGGTCCCT
CCCCACCCGGCAAGTGGCGTCCTCCGGTGTAGCAGACGCCCTGGCATCGG
ACATCGACTACGAGTCCCAGATCAAGACGATGGAGGTGAGATTCAGTCAT
GCATGCACCAACATATGTATACATATACATACAACGAACAACCAAATGTG
TGTATGTGTACGGGTTATCTATACATGCAGGTCACACATTCCCATTTGTC
ACCGATTGTGAGCCTGCTGGTGGCTGCTGATCCATGTCGCTTGACTCGGT
GAACTGAGGAGTGCCGCTTCCTGCTGAGCGCGTGCAACCTCTCGTGGCAA
TCGCTACGCATCGTCTGAGGCACAACCATCAGGCAACACCACACCGCCGT
GCAATGACTGTGCACGTAGCGCGCCCTCACTAAGTGTGCTTCATCAGCTC
TCAGGCAGTTTCAACCGCTTTTGACATGCAGGCCCCTGCACTGCCAGCCC
ATCACTTCGCTCATTCCCCAGCGCGCCTCGGCAGCCGTATTTCTCCTTGA
ATCTCTAGCAGAGGCTGCCCATCAGTGCTCGACGATCGGAGAAATCGCTG
CTGACCGTACGTCTACCCCCCACCTTTCAAGTCACATGTACTGAGTCCAC
TCAACGTGCCAAAAATCAATGCAACTATGAAATTGGCGAAAGGCATTTGC
GGCTCACCACACCTTGTCACCTAGAGCTCTACGATCTTCTGATTCGTTTT
CTTGTATCCATGGCTGCCAACAGAGGATTGGCCATGCCGCCTGCTGCAAC
AGCTCTGGCTACCTGTGCCTACACGTGCTGCGCTCACATAAATTGCTTCA
TGTCTGCCGAACGCGCCAAGGCTGCCAAACCCCCTGCTGCCGCACTTCTT
GGCCCCCGGAGTCGCCGCCGCATCGCTCAGTTGTCTACGGAGAGGGGGGG
GAGGTGGGGGGCTTGCAGGCTCTGCGCTGGGGGGGGAAGGGCATGCAGGC
TGCACCCGGGGAAGGGGGGGGGGGGGGGGGGAGACAAGCACTGGGCAGTT
GGCGCAGGGGCGGCGCTGGTGCTGACGTCGCGGTCTTGTGGAGCGCTGGT
GGTCTGCGGAGCACTGATGGCACACGCCTGCCCTTAAACGAGCGACAGCC
GCTGGCGAATGCGGCTGTGCAGACGGGCGTAGGTGGGAGAGGGGGGAGGG
AGGAGGGAGGGGGGGGGGGGAGTCGCAGCGCAGAGCGGATATGCCACACG
TCAACTGCGGATGCCACACGTAAAACAGTCTATGGATAGCACGGCGCAGC
TCGCACCGTCATGTCGCCGTCTCACGTTGCACCGTGGCGTCGCCTCGTCC
TTATGGCTAGGGTTAGGGGGTTTAACGTTAGGGTGAGAGCGTTGTGCGCA
TGCGCTGAGCTGTACTGGCGCAGGCTAGCCCTGACCCTAGTTCATGACGG
CTCCAGCTGCGTATTGCGGAAACGTGGGATGGTGCTGAGCCCGCAGTGAC
GCTCCGCAGATGCGGGCATGCGCCGCAAGTGCACGCGGCGCTGCCTCCTG
AGCACGCGTGCGCGCGCATCTGAGGTGGCGGACAAGGGGGCGGACCGGAA
GCAAGGCCGCTCTGCCACGTGACCACTAAAGGATGTGATCTGATGGCGGC
GCTGCTAGCAGTGCCGCTGTCACTGGGACGGCGCATCGTCGACGGCGTGC
GCTCCCTTTGGGGTGTGCGCCAGGGCCTCGTGCGCGCGTCTCATGGCCAT
GACTGGCAGTGGGCACACTGCGCCGCCGCGCCATTTGCGCTGGTGGTGGC
AGCATGTCGACTCCTTGAGGCGGCGCAGCGATCTCTCGAACATCGCCCTT
AACCCTAACCCTAGGAGCCAACCTCAACCCTAGGAACATTGACCCTCATC
CTTCCCCTAACTCCTGCTTCAGCTACTCCAAAGTTGTCGTCACCAATCGG
CGCTCCTGCGGCGCACGCCGCCGCCTGCGCTTTTTGCGCTTTTAAGGGTT
GGGGACACTGCCCAGCTGCCGCTTCGCACAGCGTTCTCCCATTCAGCGCC
GCAGGCAGGTGGAGGCGTACGTGCGTTGTGTGCATGTGGTCTAAAAGTCA
CCTTGCTCATCCCCCCTCCTCTCTGGTTTTCGTGTCCACCTGACGAGGCG
AAGCATGCATGCAGTTTGTGTATATTGTCAGAAAGGAGATTGTGACATCG
CTCAAGCGCCCCCTGCCCCCTTCTTTGCCCCCACCCCGCAAGTTGGAGGC
CACGGAGCGCATCAAGAAAGCCTTCGACACGGCGATCGTCAAGTCCGATG
CGCACTTCTGTACTTTGTCAGAAAGGAGGTGGTGACATTGCGCAACCCCC
ACCCCCCCCATTTATCATCGTGCCCCCTAGGTGGAGGCCAAGGAGCGCAT
CAAGAAGGCATTTGACGAGGCAACCGTCAAGTCGGACGCGGAGGCGAAGG
AGCGGTGGGCGAAGCTCGAGGGCGAGATGAAGGCGGCCGCCGCCAGCGTC
GGCCTCTAAACTTCAAGTTCAGCTTCATCAGCTTTCTAAACTTCAAGTTC
AACTTCATCAGCTCTCCGCACCTCCAACAAAATCGGTTGAACTTTACGTG
CCGACTGGAACAAGACGCTGTGATTTTGTCGCTCTCGCTTCTTCGAACGC
AACCCCCCCCAGCCCTACCACACATACCCTCTTGCGTGCTAGAACCGCCT
CTAAACAAACCATAAAACAAACCAATTTTTCTCATA

Coding sequence (CDS) from alignment at Contig_98:312804..316239+

>mRNA_14911 ID=mRNA_14911|Name=jgi.p|Trimin1|351713|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=345bp|location=Sequence derived from alignment at Contig_98:312804..316239+ (Tribonema minus UTEX_B_3156 )
ATGGCTCGCGTCATGTTCTTTGCCTTGGTGGCTCTGCTGGTGGCCGCGGC
CAGCGCCTTCGTCATGCCTGCCGCCCCTCGGTCCCTCCCCACCCGGCAAG
TGGCGTCCTCCGGTGTAGCAGACGCCCTGGCATCGGACATCGACTACGAG
TCCCAGATCAAGACGATGGAGTTGGAGGCCACGGAGCGCATCAAGAAAGC
CTTCGACACGGCGATCGTGGAGGCCAAGGAGCGCATCAAGAAGGCATTTG
ACGAGGCAACCGTCAAGTCGGACGCGGAGGCGAAGGAGCGGTGGGCGAAG
CTCGAGGGCGAGATGAAGGCGGCCGCCGCCAGCGTCGGCCTCTAA