mRNA_1490 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|161874
Unique NamemRNA_1490
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
[Close]
BLAST of jgi.p|Trimin1|161874 vs. uniprot
Match: A0A836CG78_9STRA (VWFA domain-containing protein n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A836CG78_9STRA)

HSP 1 Score: 489 bits (1259), Expect = 1.460e-174
Identity = 248/252 (98.41%), Postives = 250/252 (99.21%), Query Frame = 1 
Query:    1 MKLPPVAPPAMHFINAKGSNVPQEFAVAARANPDVIPQMAETPKELQALQKEALARQYVIIVDMSGSMGARDGKGTRWDSARSAVEKMVDTIFAYDVDHTVPLYLFDSEVTFIGELTKASQVKAVFKEFGPRGTTGLGAALREALSTYAGTKRPNYQLVPGTTFIVLLDGGADDEADVMRVLQEFADPRNGYIENHTQIALSFVQVGDDASASAFLQKLDDSITPDICDFKRDDILTQSGGLDRLLHEAIFD 756
            MKLPPVAPPAMHFINAKGSNVPQEFA+AARANPDVIPQMAETPKELQALQKEALARQYVIIVDMSGSM ARDGKGTRWDSARSAVEKMVDTIFAYDVDHTVPLYLFDSEVTFIGELTKASQVKAVFKEFGPRGTTGLGAALREALSTYAGTKRPNYQLVPGTTFIVLLDGGADDEADVMRVLQEFADPRNGYIENHTQIALSFVQVGDDASASAFLQKLDDSITPDICDFKRDDILTQ GGLDRLLH+AIFD
Sbjct:    1 MKLPPVAPPAMHFINAKGSNVPQEFAIAARANPDVIPQMAETPKELQALQKEALARQYVIIVDMSGSMAARDGKGTRWDSARSAVEKMVDTIFAYDVDHTVPLYLFDSEVTFIGELTKASQVKAVFKEFGPRGTTGLGAALREALSTYAGTKRPNYQLVPGTTFIVLLDGGADDEADVMRVLQEFADPRNGYIENHTQIALSFVQVGDDASASAFLQKLDDSITPDICDFKRDDILTQLGGLDRLLHDAIFD 252
[Close]
BLAST of jgi.p|Trimin1|161874 vs. uniprot
Match: A0A835YYE7_9STRA (VWFA domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YYE7_9STRA)

HSP 1 Score: 422 bits (1085), Expect = 4.800e-148
Identity = 205/252 (81.35%), Postives = 230/252 (91.27%), Query Frame = 1 
Query:    1 MKLPPVAPPAMHFINAKGSNVPQEFAVAARANPDVIPQMAETPKELQALQKEALARQYVIIVDMSGSMGARDGKGTRWDSARSAVEKMVDTIFAYDVDHTVPLYLFDSEVTFIGELTKASQVKAVFKEFGPRGTTGLGAALREALSTYAGTKRPNYQLVPGTTFIVLLDGGADDEADVMRVLQEFADPRNGYIENHTQIALSFVQVGDDASASAFLQKLDDSITPDICDFKRDDILTQSGGLDRLLHEAIFD 756
            MKLPP APPAMHFINAKGS+VP+EFA+AAR NPD+IPQMAET KE + L +EALARQYV+IVDMSGSM  RDG+GTRWDSAR AVEKMVDTIF YDVDHTVPLYLFDS+VTF+GELT  SQVKAVFKEFGPRG+TGLG ALREAL TYAGTKRPNY+LVPGTTFIVLLDGGADDE +V RVLQEFADP++GY+ NHTQ+A+SF+Q+GDDA ASAFL++LDD ITPDICDF +DDIL+QSGGLD LL+ AIFD
Sbjct:    1 MKLPPCAPPAMHFINAKGSSVPKEFAIAARTNPDMIPQMAETSKESKDLHREALARQYVVIVDMSGSMATRDGRGTRWDSARVAVEKMVDTIFEYDVDHTVPLYLFDSQVTFVGELTSPSQVKAVFKEFGPRGSTGLGPALREALGTYAGTKRPNYELVPGTTFIVLLDGGADDEGEVTRVLQEFADPKSGYVSNHTQLAVSFIQIGDDAGASAFLKRLDDGITPDICDFVKDDILSQSGGLDTLLYNAIFD 252
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BLAST of jgi.p|Trimin1|161874 vs. uniprot
Match: A0A835Z7E0_9STRA (VWFA domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z7E0_9STRA)

HSP 1 Score: 370 bits (949), Expect = 2.470e-127
Identity = 180/252 (71.43%), Postives = 212/252 (84.13%), Query Frame = 1 
Query:    1 MKLPPVAPPAMHFINAKGSNVPQEFAVAARANPDVIPQMAETPKELQALQKEALARQYVIIVDMSGSMGARDGKGTRWDSARSAVEKMVDTIFAYDVDHTVPLYLFDSEVTFIGELTKASQVKAVFKEFGPRGTTGLGAALREALSTYAGTKRPNYQLVPGTTFIVLLDGGADDEADVMRVLQEFADPRNGYIENHTQIALSFVQVGDDASASAFLQKLDDSITPDICDFKRDDILTQSGGLDRLLHEAIFD 756
            MKLPP + P+  F+NAKGSNV QE+A+AARANPD IP MAETP+EL+ LQKEALARQYVIIVD SGSMGA DG+GT WDSAR AV +M+DT+  YD+DHTVP+Y+FD+E  FIGE+TKASQVK +F EF PRGTT L   L EAL TYAGTKRPNY+LVPGTTFIVLLDGGADDE  VM+ +  FADPRNGY+ NHTQIA+S  Q+GDD SA+ FL++LDD I PDICD ++DDIL+++GGLDRLL+ AIFD
Sbjct:    1 MKLPPPSAPSTTFVNAKGSNVIQEYAIAARANPDCIPTMAETPRELKDLQKEALARQYVIIVDRSGSMGAADGRGTHWDSARDAVTRMIDTVLNYDIDHTVPVYIFDNECVFIGEVTKASQVKQIFTEFKPRGTTDLNNVLVEALETYAGTKRPNYELVPGTTFIVLLDGGADDEDAVMKTVCRFADPRNGYVANHTQIAISLCQIGDDPSATRFLKRLDDEIEPDICDTQKDDILSETGGLDRLLYSAIFD 252
[Close]
BLAST of jgi.p|Trimin1|161874 vs. uniprot
Match: A0A836CHH8_9STRA (VWFA domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CHH8_9STRA)

HSP 1 Score: 367 bits (943), Expect = 2.020e-126
Identity = 181/252 (71.83%), Postives = 209/252 (82.94%), Query Frame = 1 
Query:    1 MKLPPVAPPAMHFINAKGSNVPQEFAVAARANPDVIPQMAETPKELQALQKEALARQYVIIVDMSGSMGARDGKGTRWDSARSAVEKMVDTIFAYDVDHTVPLYLFDSEVTFIGELTKASQVKAVFKEFGPRGTTGLGAALREALSTYAGTKRPNYQLVPGTTFIVLLDGGADDEADVMRVLQEFADPRNGYIENHTQIALSFVQVGDDASASAFLQKLDDSITPDICDFKRDDILTQSGGLDRLLHEAIFD 756
            MKLP    P   F+NA+GS+VPQE+A+AARA+PD I  MAET  EL+ LQKEALARQYVIIVD SGSM A DG+GTRWDSAR AV KM+DTIF YDVDHTVP+Y+FD+E  FIGE+TKASQVK +F EF PRGTT L   L EA+ TYAGTKRPNY L+PGTTFIVLLDGGADDE  VMR L+ FADPRNGY+ NHTQIALSF+Q+GDDA A+ FL++LDD I PDICD K+DD+L  SGGLD+LL++AIFD
Sbjct:    1 MKLPSAPAPRTQFVNAQGSHVPQEYAIAARADPDCIKDMAETSNELKDLQKEALARQYVIIVDRSGSMAASDGRGTRWDSARDAVAKMIDTIFKYDVDHTVPVYVFDNESVFIGEVTKASQVKQIFTEFKPRGTTDLNNVLVEAIETYAGTKRPNYSLIPGTTFIVLLDGGADDEEAVMRSLRHFADPRNGYVANHTQIALSFLQIGDDAGATRFLKRLDDEIEPDICDTKKDDVLKTSGGLDQLLYDAIFD 252
[Close]
BLAST of jgi.p|Trimin1|161874 vs. uniprot
Match: A0A835ZEJ5_9STRA (VWFA domain-containing protein n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZEJ5_9STRA)

HSP 1 Score: 360 bits (923), Expect = 2.320e-123
Identity = 179/253 (70.75%), Postives = 211/253 (83.40%), Query Frame = 1 
Query:    1 MKLPPVAPPAMHFINAKGSNVPQEFAVAARANPDVIPQMAETPKELQALQKEALARQYVIIVDMSGSMGARDGKG-TRWDSARSAVEKMVDTIFAYDVDHTVPLYLFDSEVTFIGELTKASQVKAVFKEFGPRGTTGLGAALREALSTYAGTKRPNYQLVPGTTFIVLLDGGADDEADVMRVLQEFADPRNGYIENHTQIALSFVQVGDDASASAFLQKLDDSITPDICDFKRDDILTQSGGLDRLLHEAIFD 756
            MKLPP APP+  F+NA+GS+VP+E+A+ AR+NPD+I  MAETPKE   LQKEAL RQYV+IVD SGSM   DG G TRWDSA +A+EKMVDTIF YDVDH VPLYLFDSEV F+GELT  +QV+ +FKEF PRG+TGL  AL EALSTYAGTKRPNY++VPGTTFIVLLDGGADDE  V+R ++ FADP N +I NHTQIA+SFVQ+GDD +A  FL++LDD+  PDICD K+DDIL Q+GGLDRLL +AIFD
Sbjct:    1 MKLPPTAPPSTMFVNAQGSDVPKEYALPARSNPDLIVTMAETPKEKMDLQKEALVRQYVLIVDRSGSMSNPDGSGRTRWDSAGAAIEKMVDTIFQYDVDHQVPLYLFDSEVIFVGELTSPAQVRQIFKEFKPRGSTGLDKALHEALSTYAGTKRPNYEVVPGTTFIVLLDGGADDEEAVLRTIKYFADPANRFIANHTQIAISFVQIGDDPNAERFLKRLDDTSDPDICDTKKDDILYQAGGLDRLLFDAIFD 253
[Close]
BLAST of jgi.p|Trimin1|161874 vs. uniprot
Match: A0A835YR58_9STRA (VWFA domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YR58_9STRA)

HSP 1 Score: 345 bits (886), Expect = 9.880e-118
Identity = 177/253 (69.96%), Postives = 204/253 (80.63%), Query Frame = 1 
Query:    1 MKLPPVAPPAMHFINAKGSNVPQEFAVAARANPDVIPQMAETPKELQALQKEALARQYVIIVDMSGSMGARDGKG-TRWDSARSAVEKMVDTIFAYDVDHTVPLYLFDSEVTFIGELTKASQVKAVFKEFGPRGTTGLGAALREALSTYAGTKRPNYQLVPGTTFIVLLDGGADDEADVMRVLQEFADPRNGYIENHTQIALSFVQVGDDASASAFLQKLDDSITPDICDFKRDDILTQSGGLDRLLHEAIFD 756
            MKLPP A  +  F+NA+GS+VP+EFA+ AR+NPD+I  MAETPKE   LQ+EAL RQYV+IVD SGSM A D  G TRWDSA  AVE MVDTIF YD DH VPLYLFDSEVT +GELT  SQVK VF+E+ PRG+TGL  AL EAL+TYAGTKRPNY++VPGTTFIVLLDG ADDE  VMR ++ FADP N +I NHTQIALSFVQ+GDD +A  FL  LD++  PDICD K+DDIL Q+GGLDRLLH+AIFD
Sbjct:    1 MKLPPAAALSTMFVNAQGSDVPKEFALPARSNPDLIATMAETPKEKTTLQREALIRQYVLIVDRSGSMAAPDRNGRTRWDSAGVAVENMVDTIFKYDNDHQVPLYLFDSEVTSVGELTSPSQVKQVFREYRPRGSTGLDKALHEALNTYAGTKRPNYEVVPGTTFIVLLDGSADDEEPVMRTIRYFADPANKFIANHTQIALSFVQIGDDPNAERFLNCLDETAEPDICDTKKDDILYQAGGLDRLLHDAIFD 253
[Close]
BLAST of jgi.p|Trimin1|161874 vs. uniprot
Match: A0A835ZDC5_9STRA (VWFA domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZDC5_9STRA)

HSP 1 Score: 338 bits (866), Expect = 1.710e-114
Identity = 168/252 (66.67%), Postives = 205/252 (81.35%), Query Frame = 1 
Query:    4 KLPPVAPPAMHFINAKGSNVPQEFAVAARANPDVIPQMAETPKELQALQKEALARQYVIIVDMSGSMGARDGKG-TRWDSARSAVEKMVDTIFAYDVDHTVPLYLFDSEVTFIGELTKASQVKAVFKEFGPRGTTGLGAALREALSTYAGTKRPNYQLVPGTTFIVLLDGGADDEADVMRVLQEFADPRNGYIENHTQIALSFVQVGDDASASAFLQKLDDSITPDICDFKRDDILTQSGGLDRLLHEAIFD 756
            +LPP   PA  F+NAKGS+VP+++A+AARANPD+I  MA+T  EL  L+KEALARQYV+IVD S SMG  DG G TRWDSAR+AVE MV TIF +D+DHTVPLY FD  V F+GELT ASQV+  F+E+ P G+T L AAL EAL TYAGTKRPNY+LVPGTTFIVLLDGGADDE+ V+R ++ FADP NGYI NHTQIA+S VQ+GDD  A  FL+ LD+++ PDICD K+DDIL Q+GG+D++L++AIFD
Sbjct:   15 QLPPAPAPATEFVNAKGSDVPKQYALAARANPDLIHTMADTSTELSDLKKEALARQYVLIVDKSTSMGWGDGAGKTRWDSARAAVETMVLTIFEHDIDHTVPLYFFDRNVDFVGELTSASQVQQAFREYSPGGSTNLDAALLEALGTYAGTKRPNYELVPGTTFIVLLDGGADDESAVLRTIRHFADPANGYIANHTQIAISLVQIGDDDVAERFLKTLDNTVDPDICDTKKDDILYQAGGIDKMLYDAIFD 266
[Close]
BLAST of jgi.p|Trimin1|161874 vs. uniprot
Match: A0A835YW67_9STRA (VWFA domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YW67_9STRA)

HSP 1 Score: 332 bits (851), Expect = 1.810e-112
Identity = 170/245 (69.39%), Postives = 203/245 (82.86%), Query Frame = 1 
Query:    1 MKLPPVAPPAMHFINAKGSNVPQEFAVAARANPDVIPQMAETPKELQALQKEALARQYVIIVDMSGSMGARDGKG-TRWDSARSAVEKMVDTIFAYDVDHTVPLYLFDSEVTFIGELTKASQVKAVFKEFGPRGTTGLGAALREALSTYAGTKRPNYQLVPGTTFIVLLDGGADDEADVMRVLQEFADPRNGYIENHTQI--ALSFVQVGDDASASAFLQKLDDSITPDICDFKRDDILTQSGGL 726
            MKLPP APP+  F+NA+GS+VP+E+A+ ARANPD+I  MAETPKE   LQ+EAL RQYV+IV+ SGSM   DG G TRWDSA +AVEKMVDTIF YDVDHTVPLY+FDSEV F+GELT  +QVK VF+EFGPRG+TGL   L EALSTYAGTKRPNY++VPGTTFIVLLDGGADDE + +R ++ FADP N +I NHTQI  A+SFVQ+GDD +A  FL++LDD++ PDI D K+DDIL Q+GGL
Sbjct:    1 MKLPPTAPPSTLFVNAQGSDVPKEYALPARANPDLIVSMAETPKEKMDLQREALDRQYVLIVERSGSMFNPDGSGKTRWDSAGAAVEKMVDTIFDYDVDHTVPLYVFDSEVIFVGELTSPAQVKQVFREFGPRGSTGLDKGLHEALSTYAGTKRPNYEVVPGTTFIVLLDGGADDE-EAVRTIRYFADPANRFIANHTQIQIAISFVQIGDDTNAERFLKRLDDTVEPDIFDTKKDDILYQAGGL 244
[Close]
BLAST of jgi.p|Trimin1|161874 vs. uniprot
Match: Q8QNB1_ESV1K (EsV-1-176 n=1 Tax=Ectocarpus siliculosus virus 1 (isolate New Zealand/Kaikoura/1988) TaxID=654926 RepID=Q8QNB1_ESV1K)

HSP 1 Score: 308 bits (790), Expect = 4.050e-103
Identity = 153/254 (60.24%), Postives = 193/254 (75.98%), Query Frame = 1 
Query:    1 MKLPPVAPPAMHFINAKGSNVPQEFAVAARANPDVIPQMAETPKELQALQKEALARQYVIIVDMSGSMGARDGKGTRWDSARSAVEKMVDTIFAYDVDHTVPLYLFDSEVTFIGELTKASQVKAVFKEFGPRGTTGLGAALREALSTYAGTKRPNYQLVPGTTFIVLLDGGADDEADVMRVLQEFADPRNGYIENHTQIALSFVQVGDDASASAFLQKLDDSI--TPDICDFKRDDILTQSGGLDRLLHEAIFD 756
            MKLP  AP +  F NA+GS+VP+EFA+ AR NP+VI QMAETP E  AL+KEALARQYV+++D SGSMG  DG  TRW+SAR AVEK+V+  F YD DH VP+YLFD +V F+GE T +SQV  VFK + PRGTT L   L  A+  YAG KRPNY++ PGTTFIV+LDG ADD+  V RVL++F+DP +GY+ NHTQ+A+SF+Q+ DD  A+AFL +LD     +PDI D K+DDIL+  GG+D+L H+AIFD
Sbjct:    1 MKLPAAAPASTEFRNAEGSSVPKEFALEARKNPEVISQMAETPSEKSALEKEALARQYVLLIDRSGSMGWADGSTTRWESARKAVEKLVEAAFIYDTDHRVPVYLFDDKVEFVGECTSSSQVVDVFKNYQPRGTTDLAQCLEVAMEEYAGRKRPNYEVCPGTTFIVVLDGCADDKDAVKRVLRKFSDPVSGYVANHTQLAISFLQIADDPGATAFLNELDRGFVGSPDIVDTKKDDILSLPGGIDKLFHDAIFD 254
[Close]
BLAST of jgi.p|Trimin1|161874 vs. uniprot
Match: D8LPJ6_ECTSI (EsV-1-176 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LPJ6_ECTSI)

HSP 1 Score: 296 bits (759), Expect = 2.080e-98
Identity = 145/254 (57.09%), Postives = 191/254 (75.20%), Query Frame = 1 
Query:    1 MKLPPVAPPAMHFINAKGSNVPQEFAVAARANPDVIPQMAETPKELQALQKEALARQYVIIVDMSGSMGARDGKGTRWDSARSAVEKMVDTIFAYDVDHTVPLYLFDSEVTFIGELTKASQVKAVFKEFGPRGTTGLGAALREALSTYAGTKRPNYQLVPGTTFIVLLDGGADDEADVMRVLQEFADPRNGYIENHTQIALSFVQVGDDASASAFLQKLDDSI--TPDICDFKRDDILTQSGGLDRLLHEAIFD 756
            MKLP  AP +  F NA+GS VP+EFA+ AR NP+VI QMAE+P E + L+KEALARQYV+I+D SGSM   DGK TRW+SAR AVEK+V+++F YD+D ++PLYLFD +V F+GE T + Q+ +VF ++ PRG T L   L  A+ TY G  R N++ VPGTTF+V+LDG ADD   V  V++++ADP +G++ENHT  A+SFVQ+ DD  A+AFL+ LDD I  TPDICDFK D+ L++  G+DRLL +AIFD
Sbjct:    1 MKLPAAAPASTEFRNAEGSTVPKEFALEARKNPEVISQMAESPSEKRDLEKEALARQYVLIIDRSGSMSWPDGKTTRWESARKAVEKIVESVFKYDIDGSIPLYLFDDQVEFVGECTNSGQIVSVFNDYQPRGRTDLAKCLDVAMKTYLGKNRINFETVPGTTFLVILDGDADDRQAVKDVIRKYADPASGFVENHTNAAISFVQIADDPGATAFLKDLDDGIIGTPDICDFKVDNFLSEKDGVDRLLFDAIFD 254
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|161874 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A836CG78_9STRA1.460e-17498.41VWFA domain-containing protein n=2 Tax=Tribonema m... [more]
A0A835YYE7_9STRA4.800e-14881.35VWFA domain-containing protein n=1 Tax=Tribonema m... [more]
A0A835Z7E0_9STRA2.470e-12771.43VWFA domain-containing protein n=1 Tax=Tribonema m... [more]
A0A836CHH8_9STRA2.020e-12671.83VWFA domain-containing protein n=1 Tax=Tribonema m... [more]
A0A835ZEJ5_9STRA2.320e-12370.75VWFA domain-containing protein n=2 Tax=Tribonema m... [more]
A0A835YR58_9STRA9.880e-11869.96VWFA domain-containing protein n=1 Tax=Tribonema m... [more]
A0A835ZDC5_9STRA1.710e-11466.67VWFA domain-containing protein n=1 Tax=Tribonema m... [more]
A0A835YW67_9STRA1.810e-11269.39VWFA domain-containing protein n=1 Tax=Tribonema m... [more]
Q8QNB1_ESV1K4.050e-10360.24EsV-1-176 n=1 Tax=Ectocarpus siliculosus virus 1 (... [more]
D8LPJ6_ECTSI2.080e-9857.09EsV-1-176 n=1 Tax=Ectocarpus siliculosus TaxID=288... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_18contigContig_18:1233586..1234344 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|161874|e_gw1.18.313.1
DescriptionPFAM von Willebrand factor type A domain
COG categoryS
Max annot lvl1117|Cyanobacteria
EggNOG OGsCOG2304@1|root,COG2304@2|Bacteria,1G11R@1117|Cyanobacteria,1HJVR@1161|Nostocales
Evalue5.96e-22
Seed ortholog1337936.IJ00_23850
Hectar predicted targeting categoryother localisation
TranscriptId162196
TrackFilteredModels1
ProteinId161874
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|161874gene_1490Tribonema minus UTEX_B_3156 geneContig_18 1233586..1234344 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_1490_1exon_1490_1Tribonema minus UTEX_B_3156 exonContig_18 1233586..1234344 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_1490CDS_1490Tribonema minus UTEX_B_3156 CDSContig_18 1233586..1234344 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|161874Trimin1|161874|e_gw1.18.313.1Tribonema minus UTEX_B_3156 polypeptideContig_18 1233586..1234344 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_1490 ID=mRNA_1490|Name=jgi.p|Trimin1|161874|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=759bp|location=Sequence derived from alignment at Contig_18:1233586..1234344+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGAAGCTGCCTCCCGTCGCACCACCCGCAATGCACTTCATCAATGCTAA
AGGCAGCAACGTGCCGCAGGAGTTTGCCGTTGCAGCACGTGCCAACCCCG
ATGTCATTCCACAGATGGCAGAGACACCTAAGGAACTGCAGGCTTTACAG
AAAGAGGCGCTGGCAAGGCAATATGTCATCATTGTCGATATGTCTGGCTC
CATGGGGGCAAGGGATGGGAAAGGCACGCGCTGGGACTCAGCCCGTTCTG
CAGTAGAGAAAATGGTGGACACGATTTTTGCGTACGACGTGGATCATACT
GTCCCTCTCTACCTGTTTGACAGCGAGGTCACATTTATCGGTGAGCTCAC
CAAGGCATCGCAGGTCAAGGCTGTTTTCAAGGAGTTTGGTCCAAGGGGGA
CGACAGGTTTGGGTGCTGCTCTGCGAGAGGCGCTAAGCACTTATGCTGGC
ACGAAACGGCCCAACTACCAGCTCGTGCCGGGCACAACCTTCATTGTACT
GCTTGACGGCGGCGCAGATGATGAAGCTGATGTAATGCGCGTACTCCAGG
AGTTTGCAGACCCCAGAAATGGCTACATTGAAAATCACACGCAAATAGCT
CTTTCCTTCGTGCAGGTCGGCGATGACGCGTCAGCATCCGCTTTCCTACA
GAAGCTCGATGACAGCATCACACCAGACATTTGCGACTTCAAACGTGATG
ACATTCTAACACAATCGGGGGGACTAGACAGGCTTCTGCATGAAGCCATA
TTCGATTAG
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protein sequence of jgi.p|Trimin1|161874

>Trimin1|161874|e_gw1.18.313.1 ID=Trimin1|161874|e_gw1.18.313.1|Name=jgi.p|Trimin1|161874|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=253bp
MKLPPVAPPAMHFINAKGSNVPQEFAVAARANPDVIPQMAETPKELQALQ
KEALARQYVIIVDMSGSMGARDGKGTRWDSARSAVEKMVDTIFAYDVDHT
VPLYLFDSEVTFIGELTKASQVKAVFKEFGPRGTTGLGAALREALSTYAG
TKRPNYQLVPGTTFIVLLDGGADDEADVMRVLQEFADPRNGYIENHTQIA
LSFVQVGDDASASAFLQKLDDSITPDICDFKRDDILTQSGGLDRLLHEAI
FD*
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mRNA from alignment at Contig_18:1233586..1234344+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_1490 ID=mRNA_1490|Name=jgi.p|Trimin1|161874|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=759bp|location=Sequence derived from alignment at Contig_18:1233586..1234344+ (Tribonema minus UTEX_B_3156 )
ATGAAGCTGCCTCCCGTCGCACCACCCGCAATGCACTTCATCAATGCTAA
AGGCAGCAACGTGCCGCAGGAGTTTGCCGTTGCAGCACGTGCCAACCCCG
ATGTCATTCCACAGATGGCAGAGACACCTAAGGAACTGCAGGCTTTACAG
AAAGAGGCGCTGGCAAGGCAATATGTCATCATTGTCGATATGTCTGGCTC
CATGGGGGCAAGGGATGGGAAAGGCACGCGCTGGGACTCAGCCCGTTCTG
CAGTAGAGAAAATGGTGGACACGATTTTTGCGTACGACGTGGATCATACT
GTCCCTCTCTACCTGTTTGACAGCGAGGTCACATTTATCGGTGAGCTCAC
CAAGGCATCGCAGGTCAAGGCTGTTTTCAAGGAGTTTGGTCCAAGGGGGA
CGACAGGTTTGGGTGCTGCTCTGCGAGAGGCGCTAAGCACTTATGCTGGC
ACGAAACGGCCCAACTACCAGCTCGTGCCGGGCACAACCTTCATTGTACT
GCTTGACGGCGGCGCAGATGATGAAGCTGATGTAATGCGCGTACTCCAGG
AGTTTGCAGACCCCAGAAATGGCTACATTGAAAATCACACGCAAATAGCT
CTTTCCTTCGTGCAGGTCGGCGATGACGCGTCAGCATCCGCTTTCCTACA
GAAGCTCGATGACAGCATCACACCAGACATTTGCGACTTCAAACGTGATG
ACATTCTAACACAATCGGGGGGACTAGACAGGCTTCTGCATGAAGCCATA
TTCGATTAG
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Coding sequence (CDS) from alignment at Contig_18:1233586..1234344+

>mRNA_1490 ID=mRNA_1490|Name=jgi.p|Trimin1|161874|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=759bp|location=Sequence derived from alignment at Contig_18:1233586..1234344+ (Tribonema minus UTEX_B_3156 )
ATGAAGCTGCCTCCCGTCGCACCACCCGCAATGCACTTCATCAATGCTAA
AGGCAGCAACGTGCCGCAGGAGTTTGCCGTTGCAGCACGTGCCAACCCCG
ATGTCATTCCACAGATGGCAGAGACACCTAAGGAACTGCAGGCTTTACAG
AAAGAGGCGCTGGCAAGGCAATATGTCATCATTGTCGATATGTCTGGCTC
CATGGGGGCAAGGGATGGGAAAGGCACGCGCTGGGACTCAGCCCGTTCTG
CAGTAGAGAAAATGGTGGACACGATTTTTGCGTACGACGTGGATCATACT
GTCCCTCTCTACCTGTTTGACAGCGAGGTCACATTTATCGGTGAGCTCAC
CAAGGCATCGCAGGTCAAGGCTGTTTTCAAGGAGTTTGGTCCAAGGGGGA
CGACAGGTTTGGGTGCTGCTCTGCGAGAGGCGCTAAGCACTTATGCTGGC
ACGAAACGGCCCAACTACCAGCTCGTGCCGGGCACAACCTTCATTGTACT
GCTTGACGGCGGCGCAGATGATGAAGCTGATGTAATGCGCGTACTCCAGG
AGTTTGCAGACCCCAGAAATGGCTACATTGAAAATCACACGCAAATAGCT
CTTTCCTTCGTGCAGGTCGGCGATGACGCGTCAGCATCCGCTTTCCTACA
GAAGCTCGATGACAGCATCACACCAGACATTTGCGACTTCAAACGTGATG
ACATTCTAACACAATCGGGGGGACTAGACAGGCTTCTGCATGAAGCCATA
TTCGATTAG
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