Homology
BLAST of jgi.p|Trimin1|339728 vs. uniprot
Match:
A0A835YJG6_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YJG6_9STRA)
HSP 1 Score: 926 bits (2392), Expect = 0.000e+0
Identity = 661/661 (100.00%), Postives = 661/661 (100.00%), Query Frame = 1
Query: 1 MPAFQDVLCEAALRNLGIPLNNKKGRQKPRRSSSGGDAFDYFGLFRLSLSSSCGTWHGDVNTSSHGXXXXXXXXXXXXXXXXXXXXXXXLTAASAPSTAAACACDYPCRSGHCPPALNPNAAAPPPLAAAAPARTVTVAGDCLRFEHLESKCSLALALRASGLAHMSPETVCLRWDEALPPAAAARVARAAPWVLKRDGGSGGHDVFVVTRAADADALIAAAAALQAALPFHAERAAIPGWALQRHVDAPLLVRGGRKFHARVYALALDGSVRDDCXXXXXXXXXXXXXXXXXXXGXXECGSDGXXXECGSGTSGNGDATAAVTGTESVSIGGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGVFYVHDRVEVRVAAQRFDASDFTARAAHITNGAGGSDTARLLARNVLELADEEPRLRAFVADIMRRVLLPXXXXXXXXXGSGGSCDGGSSGDEGCDSXXXXXXXXXXXXXXXXXXXXXXXXXXXSSXXGCVGGXXXXXXXXXXXSCQRATSSCGSGMNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGCCRCARASAGAAPGAGSTARQRSFALLAFDVMLDSARRPWLLEVNHNPAVPSREVLAGEGECGDAFWEHLVGLCQDIIEVTALEVGGAPARAEREHAGFGAALHCH 1983
MPAFQDVLCEAALRNLGIPLNNKKGRQKPRRSSSGGDAFDYFGLFRLSLSSSCGTWHGDVNTSSHGXXXXXXXXXXXXXXXXXXXXXXXLTAASAPSTAAACACDYPCRSGHCPPALNPNAAAPPPLAAAAPARTVTVAGDCLRFEHLESKCSLALALRASGLAHMSPETVCLRWDEALPPAAAARVARAAPWVLKRDGGSGGHDVFVVTRAADADALIAAAAALQAALPFHAERAAIPGWALQRHVDAPLLVRGGRKFHARVYALALDGSVRDDCXXXXXXXXXXXXXXXXXXXGXXECGSDGXXXECGSGTSGNGDATAAVTGTESVSIGGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGVFYVHDRVEVRVAAQRFDASDFTARAAHITNGAGGSDTARLLARNVLELADEEPRLRAFVADIMRRVLLPXXXXXXXXXGSGGSCDGGSSGDEGCDSXXXXXXXXXXXXXXXXXXXXXXXXXXXSSXXGCVGGXXXXXXXXXXXSCQRATSSCGSGMNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGCCRCARASAGAAPGAGSTARQRSFALLAFDVMLDSARRPWLLEVNHNPAVPSREVLAGEGECGDAFWEHLVGLCQDIIEVTALEVGGAPARAEREHAGFGAALHCH
Sbjct: 1 MPAFQDVLCEAALRNLGIPLNNKKGRQKPRRSSSGGDAFDYFGLFRLSLSSSCGTWHGDVNTSSHGXXXXXXXXXXXXXXXXXXXXXXXLTAASAPSTAAACACDYPCRSGHCPPALNPNAAAPPPLAAAAPARTVTVAGDCLRFEHLESKCSLALALRASGLAHMSPETVCLRWDEALPPAAAARVARAAPWVLKRDGGSGGHDVFVVTRAADADALIAAAAALQAALPFHAERAAIPGWALQRHVDAPLLVRGGRKFHARVYALALDGSVRDDCXXXXXXXXXXXXXXXXXXXGXXECGSDGXXXECGSGTSGNGDATAAVTGTESVSIGGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGVFYVHDRVEVRVAAQRFDASDFTARAAHITNGAGGSDTARLLARNVLELADEEPRLRAFVADIMRRVLLPXXXXXXXXXGSGGSCDGGSSGDEGCDSXXXXXXXXXXXXXXXXXXXXXXXXXXXSSXXGCVGGXXXXXXXXXXXSCQRATSSCGSGMNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGCCRCARASAGAAPGAGSTARQRSFALLAFDVMLDSARRPWLLEVNHNPAVPSREVLAGEGECGDAFWEHLVGLCQDIIEVTALEVGGAPARAEREHAGFGAALHCH 661
BLAST of jgi.p|Trimin1|339728 vs. uniprot
Match:
A0A7S2RA13_9STRA (Hypothetical protein n=1 Tax=labyrinthulid quahog parasite QPX TaxID=96639 RepID=A0A7S2RA13_9STRA)
HSP 1 Score: 72.0 bits (175), Expect = 8.610e-10
Identity = 51/143 (35.66%), Postives = 74/143 (51.75%), Query Frame = 1
Query: 394 PARTVTVAGDCLRFE-HLESKCSLALALRASGLAHMSPETVCLRWDEALP--PAAAARVARAAPWVLKRDGGSGGHDVFVVTRAADADALIAAAAALQAALPFHAERAAIPGWALQRHVDAPLLVRGGR---KFHARVYALAL 804
P V D R H+ESK LAL P++ + WD +LP + ++ + P+VLKRDGGS GHD+ V + IA +++ALPF ER I WALQ++VD P++++ KFH R Y +A+
Sbjct: 49 PGHVVKACADISRIAWHVESKHYLALQTSLP-----CPKSFAIPWDVSLPLPKEVSCCISSSTPYVLKRDGGSEGHDITFVNSPEQVEECIAQVQEMESALPFADERP-ISNWALQKYVDPPMVLKVDGLPYKFHVRAYVVAV 185
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|339728 vs. uniprot
Analysis Date: 2022-09-19 (
Diamond blastx: OGS1.0 vs UniRef90 )
Total hits: 2
0 1 Expect = 0.00e+0 / Id = 100.00 Expect = 8.61e-10 / Id = 35.66 Sequence A0A835YJG6_9STRA A0A7S2RA13_9STRA back to top
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name Value
ProteomeId Trimin1|339728|MIX48491_36_51 Hectar predicted targeting category other localisation TranscriptId 340050 Track FilteredModels1 ProteinId 339728
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA
>mRNA_14906 ID=mRNA_14906|Name=jgi.p|Trimin1|339728|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=2028bp|location=Sequence derived from alignment at Contig_98:280510..283299- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.
ATGCCTGCCTTCCAGGACGTCCTGTGCGAGGCAGCGCTCAGGAATCTCGG back to top protein sequence of jgi.p|Trimin1|339728
>Trimin1|339728|MIX48491_36_51 ID=Trimin1|339728|MIX48491_36_51|Name=jgi.p|Trimin1|339728|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=662bp
MPAFQDVLCEAALRNLGIPLNNKKGRQKPRRSSSGGDAFDYFGLFRLSLS back to top mRNA from alignment at Contig_98:280510..283299-
Legend: polypeptide exon CDS three_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_14906 ID=mRNA_14906|Name=jgi.p|Trimin1|339728|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=2790bp|location=Sequence derived from alignment at Contig_98:280510..283299- (Tribonema minus UTEX_B_3156 )ATGCCTGCCTTCCA GGACGTCCTGTGCGAGGCAGCGCT
CAGGAATCTCGGCATACCCCTAAATAACAAGAAGGGTCGACAGAAACCAC
GGCGCAGCAGCAGCGGCGGCGATGCCTTCGACTACTTCGGCCTCTTCCGC
CTATCGCTGAGCAGTAGCTGCGGTACTTGGCACGGCGATGTGAACACCAG
CAGCCACGGCGGCGGCGGCGGCGGCGGCAGTGCCAATGGCGGCAGCAACG
GCGGCAGCAGCAGCAGCAGCAGCGCAGGTCTCACCGCTGCCAGCGCACCA
TCCACGGCCGCCGCTTGCGCATGCGATTACCCGTGCCGCTCAGGGCATTG
CCCCCCAGCGCTGAACCCCAATGCCGCTGCGCCGCCGCCGCTGGCAGCAG
CGGCGCCAGCGCGCACCGTGACCGTCGCCGGCGACTGCCTGCGCTTCGAG
CACCTCGAGTCCAAGTGCAGCCTGGCGCTAGCGCTGCGCGCGAGCGGCCT
CGCACACATGTCCCCTGAGACCGTGTGCCTGCGCTGGGACGAGGCGCTGC
CGCCGGCGGCGGCGGCGCGCGTCGCGCGCGCGGCGCCGTGGGTCCTCAAG
CGCGACGGCGGCAGCGGCGGCCACGACGTGTTCGTGGTGACGCGCGCCGC
GGACGCGGACGCGCTCATCGCGGCGGCGGCGGCGCTGCAGGCCGCGCTGC
CGTTCCACGCGGAGCGCGCCGCGATCCCCGGCTGGGCGCTGCAGCGGCAC
GTCGACGCGCCGCTGCTCGTGCGCGGCGGCCGCAAGTTCCACGCGCGCGT
GTACGCGCTCGCGCTCGACGGCAGCGTCCGCGATGACTGCTGTGGCGGTG
GCGGCGCGGCCGGCAACAGCAGCGGCGGCGGTTGTCTATGCTGCTGTGGC
GGAGGGGAGTGCGGCAGCGACGGCGGCGGAGGGGAGTGCGGCAGCGGCAC
ATCTGGCAATGGTGACGCCACTGCGGCCGTCACTGGTACCGAAAGTGTCA
GCATCGGAGGCGGCAGCAGCGGTGGCGGCGGCAGCGGCGGCGGCGGCGGA
GGCGGCGGCGGCAGCGGCTGCGGTAGCTGCAGCACTGGCGGCAGTGGCAG
TGGCGGCGTTTTCTACGTGCACGACCGCGTGGAGGTGCGCGTTGCGGCGC
AGCGCTTTGACGCCAGCGACTTCACGGCGCGCGCCGCGCACATCACCAAC
GGCGCCGGCGGCAGCGACACGGCGCGGCTGCTGGCGCGCAATGTGCTGGA
ACTGGCGGATGAGGAGCCGCGGCTGCGTGCGTTCGTCGCCGACATCATGC
GACGCGTCCTGCTGCCGCCGCCGCGGCGACGGAGCCAGCAGCGCGGCAGT
GGCGGCAGCTGCGACGGCGGCAGCAGCGGAGATGAGGGCTGCGACAGCGA
CGGCGGCGGCAGCGGCGGCAGTGGCAGCGACGGTGGCAGCGGTGGCGATG
AGGGCGGCGGCTGCGACAGCGGCGACGGCAGCAGCGGCGGCGGCTGTGTT
GGCGGCGGCGGCAGCGGCGGCGGCGGTGGCGGCGGCGGCAGCTGTCAGCG
TGCCACGAGCTCATGCGGCAGCGGCATGAACGGTGATGGCGGCAGCGGCG
ACAGCAGCAGCGCCAGCGGAGGAAACAGCAGCGGCGGCAGCGGCAGCGGC
GGCGGCGGCAGCGCCAGCGCAAGCGGCTGCTGTCGCTGCGCACGCGCCAG
CGCTGGCGCGGCGCCCGGGGCCGGCAGCACCGCGCGGCAGCGCTCATTCG
CGCTGCTGGCATTCGACGTCATGCTCGACAGCGCGCGCCGCCCGTGGCTG
CTGGAGGTCAACCACAACCCTGCGGTTCCTAGTCGCGAGGTTCTGGCAGG
CGAAGGCGAGTGCGGAGATGCGTTTTGGGAACACCTCGTGGGCCTGTGCC
AGGACATTATTGAGGTTACGGCGCTTGAAGTTGGGGGTGCGCCGGCGCGC
GCCGAGCGGGAGCACGCAGGGTTCGGCGCCGCGCTGCACTGTCACTGA GC
GCTGCCATCTGTTTCCTTGGAATTCACTGCGTACGACATC back to top Coding sequence (CDS) from alignment at Contig_98:280510..283299-
>mRNA_14906 ID=mRNA_14906|Name=jgi.p|Trimin1|339728|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=1986bp|location=Sequence derived from alignment at Contig_98:280510..283299- (Tribonema minus UTEX_B_3156 ) back to top