mRNA_14899 (mRNA) Tribonema minus UTEX_B_3156
|
Overview
Homology
BLAST of jgi.p|Trimin1|351704 vs. uniprot
Match: A0A835YGX0_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YGX0_9STRA) HSP 1 Score: 835 bits (2158), Expect = 4.580e-305 Identity = 414/414 (100.00%), Postives = 414/414 (100.00%), Query Frame = 1
Query: 1 MLIDLDPAVDLPSATDSVPAAAAAAEPVTAAGAPTPSAPTSSDLCAAVLGLPLAAICADDGAACGCSVSESGGDHQAATLASGSDSHSGASRPGGSSRYCVLLSGGLRSFAASSFSLRAFILDVNAPIDVFVYGSYDAGVPQDEENLELLRGVATAFVLEPFRFIPTRMIWQWSAIRNALEMATAYADARGRPYDAIVRARPDTVYLTPLHLDTLLSRDREVELHRPYFRAHAWKSNAELNASADIPRPVLSTAPAFFPSFFVATPEVMQLMIAHDFYQRFWRVRNDHLNSMLELKPLGLHADYWFAPGDGFESLLSEWLVWNQVPIAEIPHVGPSAFVWGTLRPQCIGDYCDGTWMSCGQWTDVECVIEHGLREGEPDNRRYNMTEIVRGVPEARQYCAAWQEGEYPPVNRVR 1242
MLIDLDPAVDLPSATDSVPAAAAAAEPVTAAGAPTPSAPTSSDLCAAVLGLPLAAICADDGAACGCSVSESGGDHQAATLASGSDSHSGASRPGGSSRYCVLLSGGLRSFAASSFSLRAFILDVNAPIDVFVYGSYDAGVPQDEENLELLRGVATAFVLEPFRFIPTRMIWQWSAIRNALEMATAYADARGRPYDAIVRARPDTVYLTPLHLDTLLSRDREVELHRPYFRAHAWKSNAELNASADIPRPVLSTAPAFFPSFFVATPEVMQLMIAHDFYQRFWRVRNDHLNSMLELKPLGLHADYWFAPGDGFESLLSEWLVWNQVPIAEIPHVGPSAFVWGTLRPQCIGDYCDGTWMSCGQWTDVECVIEHGLREGEPDNRRYNMTEIVRGVPEARQYCAAWQEGEYPPVNRVR
Sbjct: 1 MLIDLDPAVDLPSATDSVPAAAAAAEPVTAAGAPTPSAPTSSDLCAAVLGLPLAAICADDGAACGCSVSESGGDHQAATLASGSDSHSGASRPGGSSRYCVLLSGGLRSFAASSFSLRAFILDVNAPIDVFVYGSYDAGVPQDEENLELLRGVATAFVLEPFRFIPTRMIWQWSAIRNALEMATAYADARGRPYDAIVRARPDTVYLTPLHLDTLLSRDREVELHRPYFRAHAWKSNAELNASADIPRPVLSTAPAFFPSFFVATPEVMQLMIAHDFYQRFWRVRNDHLNSMLELKPLGLHADYWFAPGDGFESLLSEWLVWNQVPIAEIPHVGPSAFVWGTLRPQCIGDYCDGTWMSCGQWTDVECVIEHGLREGEPDNRRYNMTEIVRGVPEARQYCAAWQEGEYPPVNRVR 414
BLAST of jgi.p|Trimin1|351704 vs. uniprot
Match: A0A835Z0K3_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z0K3_9STRA) HSP 1 Score: 224 bits (570), Expect = 6.220e-67 Identity = 113/162 (69.75%), Postives = 138/162 (85.19%), Query Frame = 1
Query: 307 LSGGLRSFAASSFSLRAFILDVNAPIDVFVYGSYDAGVPQDEENLELLRGVATAFVLEPFRFIPTRMIWQWSAIRNALEMATAYADARGRPYDAIVRARPDTVYLTPLHLDTLLSRDREVELHRPYFRAHAWKSNAELNASADIPRPVLSTA----PAFFPS 780
LS LRSFAA+SFSLR F+L+VNAP+DVFVYG+Y AGVPQDEEN+ELLRG+ATAFVLEPF IP RM+WQW +IRN+L+MATAYADARG PY A+VR+RPDTVYLTPLHLD LLS+ ++ L+RPYF A +KS+AELN +A++ +PVL+ + PAFFPS
Sbjct: 71 LSARLRSFAATSFSLRRFVLEVNAPMDVFVYGTYIAGVPQDEENVELLRGLATAFVLEPFVEIP-RMMWQWQSIRNSLDMATAYADARGSPYAAVVRSRPDTVYLTPLHLDALLSKYLDLGLYRPYFAAQGFKSDAELNLTAEVSQPVLAVSKVALPAFFPS 231
BLAST of jgi.p|Trimin1|351704 vs. uniprot
Match: A0A835YXM7_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YXM7_9STRA) HSP 1 Score: 201 bits (512), Expect = 2.150e-59 Identity = 85/149 (57.05%), Postives = 112/149 (75.17%), Query Frame = 1
Query: 784 FVATPEVMQLMIAHDFYQRFWRVRNDHLNSMLELKPLGLHADYWFAPGDGFESLLSEWLVWNQVPIAEIPHVGPSAFVWGTLRPQCIGDYCDGTWMSCGQWTDVECVIEHGLREGEPDNRRYNMTEIVRGVPEARQYCAAWQEGEYPPV 1230
F+ATP VM+L+++ DF +RFWR+RN++ +ML PL L +Y F G+GFE +L EWL+WNQVPIAE+PHVGP +FVWGTLRP+ IG+YC+GTWM +WTD C+I+H L P +YN+TE+V VPEA QYC WQ+G YPP+
Sbjct: 14 FIATPAVMRLLLSPDFSERFWRMRNEYKPNMLAANPLALDRNYTFELGNGFEMVLREWLIWNQVPIAELPHVGPLSFVWGTLRPEHIGNYCNGTWMRTARWTDAHCMIKHSLGSRVPGTVQYNITEVVTEVPEAVQYCNDWQQGAYPPL 162
BLAST of jgi.p|Trimin1|351704 vs. uniprot
Match: A0A835ZQA6_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZQA6_9STRA) HSP 1 Score: 195 bits (495), Expect = 3.310e-54 Identity = 88/95 (92.63%), Postives = 90/95 (94.74%), Query Frame = 1
Query: 781 FFVATPEVMQLMIAHDFYQRFWRVRNDHLNSMLELKPLGLHADYWFAPGDGFESLLSEWLVWNQVPIAEIPHVGPSAFVWGTLRPQCIGDYCDGT 1065
FFVATPEVMQLM+AHDFYQRFWRVRNDHLN MLEL PLGLHADY F PGDGFESLLSEWLVWNQVPIAEIPHVGPSAFVWGTLRPQCIGDYC+ T
Sbjct: 32 FFVATPEVMQLMMAHDFYQRFWRVRNDHLNDMLELNPLGLHADYRFGPGDGFESLLSEWLVWNQVPIAEIPHVGPSAFVWGTLRPQCIGDYCEVT 126 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|351704 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 4
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_14899 ID=mRNA_14899|Name=jgi.p|Trimin1|351704|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1430bp|location=Sequence derived from alignment at Contig_98:193696..197106- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. ATGTTGATAGACCTCGACCCCGCAGTGGACCTTCCGTCAGCCACCGACTCback to top protein sequence of jgi.p|Trimin1|351704 >Trimin1|351704|estExt_Genemark1.C_Ctg_980020 ID=Trimin1|351704|estExt_Genemark1.C_Ctg_980020|Name=jgi.p|Trimin1|351704|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=415bp MLIDLDPAVDLPSATDSVPAAAAAAEPVTAAGAPTPSAPTSSDLCAAVLGback to top mRNA from alignment at Contig_98:193696..197106- Legend: polypeptideexonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_14899 ID=mRNA_14899|Name=jgi.p|Trimin1|351704|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=3411bp|location=Sequence derived from alignment at Contig_98:193696..197106- (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_98:193696..197106- >mRNA_14899 ID=mRNA_14899|Name=jgi.p|Trimin1|351704|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=1245bp|location=Sequence derived from alignment at Contig_98:193696..197106- (Tribonema minus UTEX_B_3156 )back to top |