mRNA_1484 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|161982
Unique NamemRNA_1484
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
[Close]
BLAST of jgi.p|Trimin1|161982 vs. uniprot
Match: A0A835Z9Q5_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z9Q5_9STRA)

HSP 1 Score: 194 bits (492), Expect = 8.820e-63
Identity = 94/94 (100.00%), Postives = 94/94 (100.00%), Query Frame = 1 
Query:    1 ENTKVVEFPVAAEGVRTTNTVSMWEQLSLSAFMQRVYSDNQVWATVTFDPETEGHQIAHALDVFQYMLKGVSFLPRDPTRTVYAQAPYDPITKE 282
            ENTKVVEFPVAAEGVRTTNTVSMWEQLSLSAFMQRVYSDNQVWATVTFDPETEGHQIAHALDVFQYMLKGVSFLPRDPTRTVYAQAPYDPITKE
Sbjct:    1 ENTKVVEFPVAAEGVRTTNTVSMWEQLSLSAFMQRVYSDNQVWATVTFDPETEGHQIAHALDVFQYMLKGVSFLPRDPTRTVYAQAPYDPITKE 94
[Close]
BLAST of jgi.p|Trimin1|161982 vs. uniprot
Match: A0A7S4GGC6_9EUGL (Ribonucleoside-triphosphate reductase (thioredoxin) n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S4GGC6_9EUGL)

HSP 1 Score: 122 bits (307), Expect = 1.610e-30
Identity = 63/95 (66.32%), Postives = 75/95 (78.95%), Query Frame = 1 
Query:    1 ENTKVVEFPV-AAEGVRTTNTVSMWEQLSLSAFMQRVYSDNQVWATVTFDPETEGHQIAHALDVFQYMLKGVSFLPRDPTRTVYAQAPYDPITKE 282
            E+T +VEFPV A EGVRT   VSMWEQLSL+AF+QR ++DNQV ATV+FDPETEG QIA AL  FQY LKGVSFLPR  + T + Q PY+ IT++
Sbjct:  565 ESTSIVEFPVDAGEGVRTAKDVSMWEQLSLAAFLQRHWADNQVSATVSFDPETEGAQIATALQFFQYQLKGVSFLPRFVSGTAFKQMPYEAITEQ 659
[Close]
BLAST of jgi.p|Trimin1|161982 vs. uniprot
Match: A0A835Z3U9_9STRA (Ribonucleoside-triphosphate reductase (thioredoxin) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z3U9_9STRA)

HSP 1 Score: 122 bits (305), Expect = 2.600e-30
Identity = 59/93 (63.44%), Postives = 74/93 (79.57%), Query Frame = 1 
Query:    7 TKVVEFPV-AAEGVRTTNTVSMWEQLSLSAFMQRVYSDNQVWATVTFDPETEGHQIAHALDVFQYMLKGVSFLPRDPTRTVYAQAPYDPITKE 282
            T+VV  PV A +GVR  ++VSMWEQL+L+AF+QR Y+DNQV  TVTFDP TEG  IAHALD++Q+ LKG+SFLPR  T T Y Q+PY+ IT+E
Sbjct:  492 TEVVSIPVHAGKGVRVASSVSMWEQLALAAFLQRYYADNQVSCTVTFDPNTEGADIAHALDMYQFALKGISFLPRAKTGTTYVQSPYEAITEE 584
[Close]
BLAST of jgi.p|Trimin1|161982 vs. uniprot
Match: A0A6A5CH21_NAEFO (Ribonucleoside-triphosphate reductase (thioredoxin) n=1 Tax=Naegleria fowleri TaxID=5763 RepID=A0A6A5CH21_NAEFO)

HSP 1 Score: 119 bits (297), Expect = 3.870e-29
Identity = 60/94 (63.83%), Postives = 73/94 (77.66%), Query Frame = 1 
Query:    7 TKVVEFPV-AAEGVRTTNTVSMWEQLSLSAFMQRVYSDNQVWATVTFDPETEGHQIAHALDVFQYMLKGVSFLPR-DPTRTVYAQAPYDPITKE 282
            T VVEFP+   EG+RT   +SMWEQLSL+AF+QR +SDNQV AT+TF+P+TEG QI +ALD FQY LKGVSFLP  D   + Y Q PY+PIT+E
Sbjct:  687 TTVVEFPIDCGEGIRTAKDLSMWEQLSLAAFLQRYWSDNQVSATITFNPQTEGPQIQYALDYFQYQLKGVSFLPMMDTDSSPYPQMPYEPITEE 780
[Close]
BLAST of jgi.p|Trimin1|161982 vs. uniprot
Match: A0A7S1HV46_9EUGL (Hypothetical protein n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S1HV46_9EUGL)

HSP 1 Score: 116 bits (290), Expect = 1.900e-28
Identity = 60/93 (64.52%), Postives = 70/93 (75.27%), Query Frame = 1 
Query:    7 TKVVEFPV-AAEGVRTTNTVSMWEQLSLSAFMQRVYSDNQVWATVTFDPETEGHQIAHALDVFQYMLKGVSFLPRDPTRTVYAQAPYDPITKE 282
            T VVEFP+ A  G+RTT  VSMWEQLSL+AF+QR ++DNQV ATVTFDP  EG  + HAL  FQY LKGVSFLPR P  + Y Q PY+ IT+E
Sbjct:  388 TAVVEFPIDAGPGIRTTRDVSMWEQLSLAAFLQRYWADNQVSATVTFDPAREGPHLEHALQYFQYQLKGVSFLPRLPA-SAYPQMPYEAITEE 479
[Close]
BLAST of jgi.p|Trimin1|161982 vs. uniprot
Match: D7FJK6_ECTSI (Ribonucleoside-triphosphate reductase (thioredoxin) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJK6_ECTSI)

HSP 1 Score: 116 bits (290), Expect = 3.310e-28
Identity = 59/95 (62.11%), Postives = 71/95 (74.74%), Query Frame = 1 
Query:    1 ENTKVVEFPV-AAEGVRTTNTVSMWEQLSLSAFMQRVYSDNQVWATVTFDPETEGHQIAHALDVFQYMLKGVSFLPRDPTRTVYAQAPYDPITKE 282
            E T VVE PV A EGVRT   +SMWEQLS +AF+QR ++DNQV  T+TFDPETEGH +AHALD FQY LKGVSFLPR      + Q PY+ I+++
Sbjct:  570 EGTMVVEVPVDAGEGVRTAQDLSMWEQLSFAAFLQRYWADNQVSCTITFDPETEGHHLAHALDYFQYQLKGVSFLPR-MDYGAFPQMPYEAISED 663
[Close]
BLAST of jgi.p|Trimin1|161982 vs. uniprot
Match: D2VAC0_NAEGR (Ribonucleoside-triphosphate reductase (thioredoxin) n=1 Tax=Naegleria gruberi TaxID=5762 RepID=D2VAC0_NAEGR)

HSP 1 Score: 115 bits (288), Expect = 5.870e-28
Identity = 56/95 (58.95%), Postives = 73/95 (76.84%), Query Frame = 1 
Query:    4 NTKVVEFPV-AAEGVRTTNTVSMWEQLSLSAFMQRVYSDNQVWATVTFDPETEGHQIAHALDVFQYMLKGVSFLPR-DPTRTVYAQAPYDPITKE 282
            NT ++EFP+   EG+RT   +SMWEQLSL++F+Q+ +SDNQV AT+TF+P+TEG QI +ALD FQY LKGVSFLP  D   + Y Q PY+ IT+E
Sbjct:  528 NTTIIEFPIDCGEGIRTAKELSMWEQLSLASFLQKYWSDNQVSATITFNPQTEGKQIQYALDYFQYQLKGVSFLPMMDQDTSPYPQMPYESITEE 622
[Close]
BLAST of jgi.p|Trimin1|161982 vs. uniprot
Match: A0A3M1D8P7_9BACT (Ribonucleoside-triphosphate reductase (thioredoxin) n=1 Tax=candidate division Zixibacteria bacterium TaxID=2053527 RepID=A0A3M1D8P7_9BACT)

HSP 1 Score: 115 bits (287), Expect = 8.330e-28
Identity = 58/95 (61.05%), Postives = 72/95 (75.79%), Query Frame = 1 
Query:    1 ENTKVVEFPVA-AEGVRTTNTVSMWEQLSLSAFMQRVYSDNQVWATVTFDPETEGHQIAHALDVFQYMLKGVSFLPRDPTRTVYAQAPYDPITKE 282
            ENT VV FP++  + +RT + VSMWEQL+L AFMQR ++DNQV ATVTFD ETEG QI HAL+ +QY LK VSFLPR  + T Y Q PY+ IT++
Sbjct:  563 ENTVVVSFPISLGDKIRTLDEVSMWEQLALVAFMQRYWADNQVSATVTFDQETEGSQIEHALNYYQYQLKSVSFLPRLKSGTAYLQMPYEAITEQ 657
[Close]
BLAST of jgi.p|Trimin1|161982 vs. uniprot
Match: A0A835Z3B7_9STRA (Ribonucleoside-triphosphate reductase (thioredoxin) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z3B7_9STRA)

HSP 1 Score: 114 bits (286), Expect = 1.090e-27
Identity = 55/93 (59.14%), Postives = 71/93 (76.34%), Query Frame = 1 
Query:    7 TKVVEFPVAA-EGVRTTNTVSMWEQLSLSAFMQRVYSDNQVWATVTFDPETEGHQIAHALDVFQYMLKGVSFLPRDPTRTVYAQAPYDPITKE 282
            TKVV  PV+  + VR  + VSMWEQ+S++AF+QR ++DNQV  TVTFDPETEG  I HAL+++QY LKG+SFLPR  T T Y Q+PY+ I+ E
Sbjct:  512 TKVVSIPVSVGDSVRVASDVSMWEQVSIAAFLQRYWADNQVSCTVTFDPETEGDDIVHALNLYQYSLKGISFLPRAKTGTTYPQSPYEAISDE 604
[Close]
BLAST of jgi.p|Trimin1|161982 vs. uniprot
Match: A0A1Y1Z8W3_9FUNG (Ribonucleoside-triphosphate reductase (thioredoxin) n=2 Tax=Basidiobolus meristosporus CBS 931.73 TaxID=1314790 RepID=A0A1Y1Z8W3_9FUNG)

HSP 1 Score: 114 bits (286), Expect = 1.140e-27
Identity = 59/94 (62.77%), Postives = 71/94 (75.53%), Query Frame = 1 
Query:    4 NTKVVEFPVA-AEGVRTTNTVSMWEQLSLSAFMQRVYSDNQVWATVTFDPETEGHQIAHALDVFQYMLKGVSFLPRDPTRTVYAQAPYDPITKE 282
            +T VVE P+   EG+R    VSMWEQLSL++F+QR +SDNQV  TVTFDPETEG Q+ HALD FQY LKG+SFLPR P   VY Q PY+ IT++
Sbjct:  561 STYVVEIPIDHGEGLRGLKEVSMWEQLSLTSFLQRYWSDNQVSCTVTFDPETEGDQMKHALDYFQYQLKGISFLPRIPAG-VYPQMPYEAITED 653
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|161982 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835Z9Q5_9STRA8.820e-63100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S4GGC6_9EUGL1.610e-3066.32Ribonucleoside-triphosphate reductase (thioredoxin... [more]
A0A835Z3U9_9STRA2.600e-3063.44Ribonucleoside-triphosphate reductase (thioredoxin... [more]
A0A6A5CH21_NAEFO3.870e-2963.83Ribonucleoside-triphosphate reductase (thioredoxin... [more]
A0A7S1HV46_9EUGL1.900e-2864.52Hypothetical protein n=1 Tax=Eutreptiella gymnasti... [more]
D7FJK6_ECTSI3.310e-2862.11Ribonucleoside-triphosphate reductase (thioredoxin... [more]
D2VAC0_NAEGR5.870e-2858.95Ribonucleoside-triphosphate reductase (thioredoxin... [more]
A0A3M1D8P7_9BACT8.330e-2861.05Ribonucleoside-triphosphate reductase (thioredoxin... [more]
A0A835Z3B7_9STRA1.090e-2759.14Ribonucleoside-triphosphate reductase (thioredoxin... [more]
A0A1Y1Z8W3_9FUNG1.140e-2762.77Ribonucleoside-triphosphate reductase (thioredoxin... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_18contigContig_18:1169954..1170238 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|161982|e_gw1.18.51.1
GOsGO:0003674,GO:0003824,GO:0004748,GO:0006139,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009141,GO:0009142,GO:0009987,GO:0016491,GO:0016725,GO:0016728,GO:0018130,GO:0019438,GO:0019637,GO:0034641,GO:0034654,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0046483,GO:0055086,GO:0055114,GO:0061731,GO:0071704,GO:0090407,GO:1901293,GO:1901360,GO:1901362,GO:1901576
Descriptionreductase
COG categoryL
Max annot lvl2759|Eukaryota
EggNOG OGsCOG1372@1|root,2QRRC@2759|Eukaryota
Evalue5.43e-29
Seed ortholog2880.D7FJK6
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-04_006460.1
TranscriptId162304
TrackFilteredModels1
ProteinId161982
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|161982gene_1484Tribonema minus UTEX_B_3156 geneContig_18 1169954..1170238 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_1484_1exon_1484_1Tribonema minus UTEX_B_3156 exonContig_18 1169954..1170238 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_1484CDS_1484Tribonema minus UTEX_B_3156 CDSContig_18 1169954..1170238 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|161982Trimin1|161982|e_gw1.18.51.1Tribonema minus UTEX_B_3156 polypeptideContig_18 1169954..1170238 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_1484 ID=mRNA_1484|Name=jgi.p|Trimin1|161982|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=285bp|location=Sequence derived from alignment at Contig_18:1169954..1170238+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
GAGAACACCAAGGTGGTGGAGTTCCCAGTCGCAGCCGAAGGCGTGCGCAC
CACAAACACAGTCAGTATGTGGGAGCAACTGAGCCTCTCGGCGTTCATGC
AGCGCGTGTACTCGGACAATCAAGTGTGGGCCACAGTCACTTTCGACCCT
GAGACTGAGGGACATCAGATTGCGCACGCACTCGACGTGTTTCAGTACAT
GTTGAAGGGGGTGTCGTTCCTACCGCGCGACCCCACGCGCACAGTGTACG
CGCAGGCACCATATGATCCCATCACCAAGGAGTAG
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protein sequence of jgi.p|Trimin1|161982

>Trimin1|161982|e_gw1.18.51.1 ID=Trimin1|161982|e_gw1.18.51.1|Name=jgi.p|Trimin1|161982|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=95bp
ENTKVVEFPVAAEGVRTTNTVSMWEQLSLSAFMQRVYSDNQVWATVTFDP
ETEGHQIAHALDVFQYMLKGVSFLPRDPTRTVYAQAPYDPITKE*
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mRNA from alignment at Contig_18:1169954..1170238+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_1484 ID=mRNA_1484|Name=jgi.p|Trimin1|161982|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=285bp|location=Sequence derived from alignment at Contig_18:1169954..1170238+ (Tribonema minus UTEX_B_3156 )
GAGAACACCAAGGTGGTGGAGTTCCCAGTCGCAGCCGAAGGCGTGCGCAC
CACAAACACAGTCAGTATGTGGGAGCAACTGAGCCTCTCGGCGTTCATGC
AGCGCGTGTACTCGGACAATCAAGTGTGGGCCACAGTCACTTTCGACCCT
GAGACTGAGGGACATCAGATTGCGCACGCACTCGACGTGTTTCAGTACAT
GTTGAAGGGGGTGTCGTTCCTACCGCGCGACCCCACGCGCACAGTGTACG
CGCAGGCACCATATGATCCCATCACCAAGGAGTAG
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Coding sequence (CDS) from alignment at Contig_18:1169954..1170238+

>mRNA_1484 ID=mRNA_1484|Name=jgi.p|Trimin1|161982|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=285bp|location=Sequence derived from alignment at Contig_18:1169954..1170238+ (Tribonema minus UTEX_B_3156 )
GAGAACACCAAGGTGGTGGAGTTCCCAGTCGCAGCCGAAGGCGTGCGCAC
CACAAACACAGTCAGTATGTGGGAGCAACTGAGCCTCTCGGCGTTCATGC
AGCGCGTGTACTCGGACAATCAAGTGTGGGCCACAGTCACTTTCGACCCT
GAGACTGAGGGACATCAGATTGCGCACGCACTCGACGTGTTTCAGTACAT
GTTGAAGGGGGTGTCGTTCCTACCGCGCGACCCCACGCGCACAGTGTACG
CGCAGGCACCATATGATCCCATCACCAAGGAGTAG
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