mRNA_14838 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	jgi.p\|Trimin1\|175579
Unique Name	mRNA_14838
Type	mRNA
Organism	Tribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )

Homology

The following BLAST results are available for this feature:

BLAST of jgi.p|Trimin1|175579 vs. uniprot

BLAST of jgi.p|Trimin1|175579 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0


Match Name	E-value	Identity	Description

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Contig_127	contig	Contig_127:20170..21897 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
OGS1.0 of Tribonema minus UTEX_B_3156	2021-06-17

Properties


Property Name	Value
ProteomeId	Trimin1\|175579\|e_gw1.127.71.1
Hectar predicted targeting category	other localisation
TranscriptId	175901
Track	FilteredModels1
ProteinId	175579

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
jgi.p\|Trimin1\|175579	gene_14838	Tribonema minus UTEX_B_3156	gene	Contig_127 20170..21897 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
jgi.p\|Trimin1\|175579	Trimin1\|175579\|e_gw1.127.71.1	Tribonema minus UTEX_B_3156	polypeptide	Contig_127 20170..21897 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
exon_14838_2	exon_14838_2	Tribonema minus UTEX_B_3156	exon	Contig_127 20170..20364 -
exon_14838_1	exon_14838_1	Tribonema minus UTEX_B_3156	exon	Contig_127 21715..21897 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
CDS_14838	CDS_14838	Tribonema minus UTEX_B_3156	CDS	Contig_127 21715..21897 -

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Contig_127:20170..21897-
coding sequence from alignment at Contig_127:20170..21897-

spliced messenger RNA

>mRNA_14838 ID=mRNA_14838|Name=jgi.p|Trimin1|175579|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=378bp|location=Sequence derived from alignment at Contig_127:20170..21897- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
CAGCCCACTCAGACCCCCACAGGGCTGCCCACGGCCACCCCCACTGGCAA
GCCCACTCGCAGGCCTACACGCACCCCCACGGCAATCCCTACGCCTGAGC
CTACCCGCAATCCCACCGCGGAGCCGACGGGGCAGCCCAGTTTGAGTCCT
ACAGCTGAGCCCACCGCACTGCCCACTGCAGAGCCTACCGGCACCCCCAC
TACGCAGCCCACTGGCACCCCCACTCTGCAGCCCACCGGCACCCCCACGG
CTAAGCCCACGCGAAAGCCGACCACAAGCAAACCGGCTCAGCAGCCCACT
GCCACCCCCACCGCGATGCCCACTGCAGAGCCCACCACTTCCCAGGTACA
GTCAACATTTGACGCGTGGGGGGCATAG

protein sequence of jgi.p|Trimin1|175579

>Trimin1|175579|e_gw1.127.71.1 ID=Trimin1|175579|e_gw1.127.71.1|Name=jgi.p|Trimin1|175579|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=126bp
QPTQTPTGLPTATPTGKPTRRPTRTPTAIPTPEPTRNPTAEPTGQPSLSP
TAEPTALPTAEPTGTPTTQPTGTPTLQPTGTPTAKPTRKPTTSKPAQQPT
ATPTAMPTAEPTTSQVQSTFDAWGA*

mRNA from alignment at Contig_127:20170..21897-

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_14838 ID=mRNA_14838|Name=jgi.p|Trimin1|175579|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1728bp|location=Sequence derived from alignment at Contig_127:20170..21897- (Tribonema minus UTEX_B_3156 )
CAGCCCACTCAGACCCCCACAGGGCTGCCCACGGCCACCCCCACTGGCAA
GCCCACTCGCAGGCCTACACGCACCCCCACGGCAATCCCTACGCCTGAGC
CTACCCGCAATCCCACCGCGGAGCCGACGGGGCAGCCCAGTTTGAGTCCT
ACAGCTGAGCCCACCGCACTGCCCACTGCAGAGGTAGGACTCGTTGCGAT
AACAATGCATACTCTAGTGACTAGACAAAAAGTTTATGCAGCGGTAGGGC
TAGAGGTAGCTTTGGGTCATGGACAGGATTAGGCCTGGGATTCGGTCGCA
TCACTGCAGCATGTGAATCGTGCGATCCTCTGTGATGCCAGATTGCAGCT
GCGCAGCCGCAAGTGTTGAAATAATGTTATGGGTCTTGACAAGTATCCTT
GAACTACGCTGCTCTCTACTTCAAGTGTGACGCGGGAGTGGAGGCGCAGC
ATGTGCACTTAGCTGTCAGGGGATGCACAGCGGTGCTGCTCTTCGTGAGC
GCTGTTGCTGTGTACTTCAGAGGCAAGCAGTGTCGTAGATAATTGAAGCT
CGGACATCAACTTCAAGTTGTCGACTTTGTAAAGATTCAGCACTAGCGTT
CGCCTTAGAGCCACCTGATGTTCACATGCCGTGAGCCTCGCTGCTGATGT
GGCGATACTCTAAACAGTCTCGCTCTGTCAATGGTTGAGGATAACGCTAG
GGTTACTAGTTGAGGTTTGCAGCATGCACCCTGCTTCTGTGCAGCCAATG
CCAATTATTTTCAAGGGCGATGCTGTAGGTTGTGTCCGGTACGTTGCCTA
CAGGCTACAAATTTGTGAAGTGAGCTGCTGAAAAGCGCTTCTCAGCAGGA
CCGTACAAGTACCTCAAAGATGGTACTACATAATTAGACGAAGGTCCAGA
TTCTGTTGTTTGCGCACAAGTCCTGCAACCAGCTTGCTTGAAACATGCTG
GTGTGAGCTTCAGTTGTTGATGGCAAATTTCCTAACCCTAACCCTATCAA
AGGTGAGAGTGTCAATCGCATTGGCCCACATGACCCCTCAGCAGGCAGGG
TCCGTTTTCAGCACATTGCCTGCATGGATGTACATACATTTGCTCACGTC
AGCTGGGCCCCAGAGCCTTCATCAGTTATCAGTGCCGATGCACGCTGGTG
CTGACGACGGCGCATAGCAGTCACCAATCACATCACTCCTGTTTTGTATT
CGTTCGAACGTGAACATTGCAACGATGTCTGACTCGACTACTCAGCACCA
TGGCACCCACTGTGTTGAGCCCTGTGCAAACAGTCCATTGGCAAACTATT
CCGGAGTCTGCAACACGAGTTAATTTTGCCAGCTGATGCTTGTACATCAC
AACACATACTTGACAAAGTTTTCTTTTCATCCCCTTGTTGTTGCTTACAA
TACGTACCGCTCCGCTATCATCACCGCTGCCACTGGTGCAGCCGGCCGGC
ACCCCCTTGACGACACTTTCCTTCTTCTTTTCGTTGTTGTTTACACACAT
ACCACACCGCCATCGCCACTGGCAATGCCGCAGCCTACCGGCACCCCCAC
TACGCAGCCCACTGGCACCCCCACTCTGCAGCCCACCGGCACCCCCACGG
CTAAGCCCACGCGAAAGCCGACCACAAGCAAACCGGCTCAGCAGCCCACT
GCCACCCCCACCGCGATGCCCACTGCAGAGCCCACCACTTCCCAGGTACA
GTCAACATTTGACGCGTGGGGGGCATAG

Coding sequence (CDS) from alignment at Contig_127:20170..21897-

>mRNA_14838 ID=mRNA_14838|Name=jgi.p|Trimin1|175579|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=378bp|location=Sequence derived from alignment at Contig_127:20170..21897- (Tribonema minus UTEX_B_3156 )
CAGCCCACTCAGACCCCCACAGGGCTGCCCACGGCCACCCCCACTGGCAA
GCCCACTCGCAGGCCTACACGCACCCCCACGGCAATCCCTACGCCTGAGC
CTACCCGCAATCCCACCGCGGAGCCGACGGGGCAGCCCAGTTTGAGTCCT
ACAGCTGAGCCCACCGCACTGCCCACTGCAGAGCCTACCGGCACCCCCAC
TACGCAGCCCACTGGCACCCCCACTCTGCAGCCCACCGGCACCCCCACGG
CTAAGCCCACGCGAAAGCCGACCACAAGCAAACCGGCTCAGCAGCCCACT
GCCACCCCCACCGCGATGCCCACTGCAGAGCCCACCACTTCCCAGGTACA
GTCAACATTTGACGCGTGGGGGGCATAG