mRNA_14822 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|154632
Unique NamemRNA_14822
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
BLAST of jgi.p|Trimin1|154632 vs. uniprot
Match: A0A835ZE96_9STRA (HCNGP-like protein-domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZE96_9STRA)

HSP 1 Score: 203 bits (516), Expect = 6.880e-66
Identity = 101/101 (100.00%), Postives = 101/101 (100.00%), Query Frame = 1
Query:    1 DDDAMAVDGGEGESGSYSGDSYSGAQDRVAKYLATMLKSNRDFTDSIKKKQEFGNPAVLTKICQHYGVDDRGSNYPRALFDAHGYDMADYYDNIAAEARKR 303
            DDDAMAVDGGEGESGSYSGDSYSGAQDRVAKYLATMLKSNRDFTDSIKKKQEFGNPAVLTKICQHYGVDDRGSNYPRALFDAHGYDMADYYDNIAAEARKR
Sbjct:    1 DDDAMAVDGGEGESGSYSGDSYSGAQDRVAKYLATMLKSNRDFTDSIKKKQEFGNPAVLTKICQHYGVDDRGSNYPRALFDAHGYDMADYYDNIAAEARKR 101          
BLAST of jgi.p|Trimin1|154632 vs. uniprot
Match: A0A7S4DG27_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DG27_HETAK)

HSP 1 Score: 74.3 bits (181), Expect = 7.310e-14
Identity = 30/60 (50.00%), Postives = 41/60 (68.33%), Query Frame = 1
Query:   76 QDRVAKYLATMLKSNRDFTDSIKKKQEFGNPAVLTKICQHYGVDDRGSNYPRALFDAHGY 255
            Q RV +YL    +   D TD++KKK+EFGNP +L K+   +G+DD  SNYP+ +FD HGY
Sbjct:  171 QQRVTEYLTLAREKGYDLTDNLKKKKEFGNPQILQKVVDFFGIDDISSNYPKEIFDPHGY 230          
BLAST of jgi.p|Trimin1|154632 vs. uniprot
Match: A0A7S3CB81_9CHLO (Hypothetical protein n=1 Tax=Chloropicon roscoffensis TaxID=1461544 RepID=A0A7S3CB81_9CHLO)

HSP 1 Score: 69.7 bits (169), Expect = 2.900e-12
Identity = 32/75 (42.67%), Postives = 44/75 (58.67%), Query Frame = 1
Query:   76 QDRVAKYLATMLKSNRDFTDSIKKKQEFGNPAVLTKICQHYGVDDRGSNYPRALFDAHGYDMADYYDNIAAEARK 300
            Q +VAK+L       RD  + I+ ++ FGNP  L K+ +H+G+D  GS YPRAL+D  G D  D YD I  +  K
Sbjct:   82 QAKVAKFLDLKRLHGRDLVEDIRGRKSFGNPDFLQKMVEHFGIDQYGSCYPRALYDYQGCDPGDEYDKIEEQVAK 156          
BLAST of jgi.p|Trimin1|154632 vs. uniprot
Match: A0A3P8WXT9_CYNSE (SAP30 binding protein n=2 Tax=Cynoglossus semilaevis TaxID=244447 RepID=A0A3P8WXT9_CYNSE)

HSP 1 Score: 68.2 bits (165), Expect = 3.100e-11
Identity = 27/70 (38.57%), Postives = 45/70 (64.29%), Query Frame = 1
Query:   76 QDRVAKYLATMLKSNRDFTDSIKKKQEFGNPAVLTKICQHYGVDDRGSNYPRALFDAHGYDMADYYDNIA 285
            QD++ K    +L+ + D    I+KK+EF NP++  K+ Q  G+D+ G+NYP+ +FD HG+    YY+ +A
Sbjct:  126 QDKIHKLYGDLLRGDLDINSHIQKKKEFRNPSIYEKLIQFSGIDEVGTNYPKDMFDPHGWSEDSYYEALA 195          
BLAST of jgi.p|Trimin1|154632 vs. uniprot
Match: A0A0V0WX07_9BILA (SAP30-binding protein (Fragment) n=8 Tax=Trichinella TaxID=6333 RepID=A0A0V0WX07_9BILA)

HSP 1 Score: 68.2 bits (165), Expect = 4.380e-11
Identity = 24/57 (42.11%), Postives = 41/57 (71.93%), Query Frame = 1
Query:  118 NRDFTDSIKKKQEFGNPAVLTKICQHYGVDDRGSNYPRALFDAHGYDMADYYDNIAA 288
            N DF  +++K+ +F NP++  K+  H+G+D++GSN+P   FD HG++  D+YD I+A
Sbjct:  256 NFDFNSTVQKRTDFRNPSIYEKLVDHFGLDEKGSNFPLEFFDPHGFNKKDFYDQISA 312          
BLAST of jgi.p|Trimin1|154632 vs. uniprot
Match: A0A0V1DBE6_TRIBR (SAP30-binding protein (Fragment) n=3 Tax=Trichinella britovi TaxID=45882 RepID=A0A0V1DBE6_TRIBR)

HSP 1 Score: 68.2 bits (165), Expect = 4.750e-11
Identity = 24/57 (42.11%), Postives = 41/57 (71.93%), Query Frame = 1
Query:  118 NRDFTDSIKKKQEFGNPAVLTKICQHYGVDDRGSNYPRALFDAHGYDMADYYDNIAA 288
            N DF  +++K+ +F NP++  K+  H+G+D++GSN+P   FD HG++  D+YD I+A
Sbjct:  275 NFDFNSTVQKRTDFRNPSIYEKLVDHFGLDEKGSNFPLEFFDPHGFNKKDFYDQISA 331          
BLAST of jgi.p|Trimin1|154632 vs. uniprot
Match: A0A0V0VPW3_9BILA (SAP30-binding protein (Fragment) n=1 Tax=Trichinella sp. T9 TaxID=181606 RepID=A0A0V0VPW3_9BILA)

HSP 1 Score: 68.2 bits (165), Expect = 4.960e-11
Identity = 24/57 (42.11%), Postives = 41/57 (71.93%), Query Frame = 1
Query:  118 NRDFTDSIKKKQEFGNPAVLTKICQHYGVDDRGSNYPRALFDAHGYDMADYYDNIAA 288
            N DF  +++K+ +F NP++  K+  H+G+D++GSN+P   FD HG++  D+YD I+A
Sbjct:  238 NFDFNSTVQKRTDFRNPSIYEKLVDHFGLDEKGSNFPLEFFDPHGFNKKDFYDQISA 294          
BLAST of jgi.p|Trimin1|154632 vs. uniprot
Match: A0A7K7PXA7_ACRAR (S30BP protein (Fragment) n=1 Tax=Acrocephalus arundinaceus TaxID=39621 RepID=A0A7K7PXA7_ACRAR)

HSP 1 Score: 66.6 bits (161), Expect = 7.520e-11
Identity = 28/70 (40.00%), Postives = 43/70 (61.43%), Query Frame = 1
Query:   76 QDRVAKYLATMLKSNRDFTDSIKKKQEFGNPAVLTKICQHYGVDDRGSNYPRALFDAHGYDMADYYDNIA 285
            QD++AK     +K   D    I+KK+EF NP++  K+ Q   +D+ GSNYP+ +FD HG+    YY+ +A
Sbjct:  132 QDKIAKLYERKIKERMDMNYIIQKKKEFRNPSIYEKLIQFCSIDEIGSNYPKDMFDPHGWSEDSYYEALA 201          
BLAST of jgi.p|Trimin1|154632 vs. uniprot
Match: A0A5A9NWH6_9TELE (SAP30-binding protein n=1 Tax=Triplophysa tibetana TaxID=1572043 RepID=A0A5A9NWH6_9TELE)

HSP 1 Score: 67.0 bits (162), Expect = 8.170e-11
Identity = 26/70 (37.14%), Postives = 47/70 (67.14%), Query Frame = 1
Query:   76 QDRVAKYLATMLKSNRDFTDSIKKKQEFGNPAVLTKICQHYGVDDRGSNYPRALFDAHGYDMADYYDNIA 285
            Q++++K     L  + D  + I+KK+EF NP++  K+ Q+ G+D+ G+NYP+ +FD HG+    YY+++A
Sbjct:  130 QEKISKLYERKLHGDFDTNNHIQKKKEFRNPSIYEKLIQYCGIDELGTNYPKDMFDPHGWSEDSYYESLA 199          
BLAST of jgi.p|Trimin1|154632 vs. uniprot
Match: A0A2G8LQ41_STIJA (Putative SAP30-binding protein isoform X1 n=1 Tax=Stichopus japonicus TaxID=307972 RepID=A0A2G8LQ41_STIJA)

HSP 1 Score: 66.6 bits (161), Expect = 1.250e-10
Identity = 26/70 (37.14%), Postives = 48/70 (68.57%), Query Frame = 1
Query:   76 QDRVAKYLATMLKSNRDFTDSIKKKQEFGNPAVLTKICQHYGVDDRGSNYPRALFDAHGYDMADYYDNIA 285
            QD++AKY     + N D   SI+ +++F NP++  K+  + G+D+ G+NYP+ +F+ HG+D + YY+++A
Sbjct:  145 QDKIAKYY----RKNLDMNASIQSRKDFRNPSIYEKLISYLGIDELGTNYPKDVFNPHGWDESSYYESLA 210          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|154632 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835ZE96_9STRA6.880e-66100.00HCNGP-like protein-domain-containing protein (Frag... [more]
A0A7S4DG27_HETAK7.310e-1450.00Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A7S3CB81_9CHLO2.900e-1242.67Hypothetical protein n=1 Tax=Chloropicon roscoffen... [more]
A0A3P8WXT9_CYNSE3.100e-1138.57SAP30 binding protein n=2 Tax=Cynoglossus semilaev... [more]
A0A0V0WX07_9BILA4.380e-1142.11SAP30-binding protein (Fragment) n=8 Tax=Trichinel... [more]
A0A0V1DBE6_TRIBR4.750e-1142.11SAP30-binding protein (Fragment) n=3 Tax=Trichinel... [more]
A0A0V0VPW3_9BILA4.960e-1142.11SAP30-binding protein (Fragment) n=1 Tax=Trichinel... [more]
A0A7K7PXA7_ACRAR7.520e-1140.00S30BP protein (Fragment) n=1 Tax=Acrocephalus arun... [more]
A0A5A9NWH6_9TELE8.170e-1137.14SAP30-binding protein n=1 Tax=Triplophysa tibetana... [more]
A0A2G8LQ41_STIJA1.250e-1037.14Putative SAP30-binding protein isoform X1 n=1 Tax=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_156contigContig_156:257755..258090 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|154632|gw1.156.59.1
GOsGO:0000375,GO:0000377,GO:0000398,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005681,GO:0005856,GO:0006139,GO:0006396,GO:0006397,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008380,GO:0009987,GO:0010467,GO:0010941,GO:0010942,GO:0016070,GO:0016071,GO:0031974,GO:0031981,GO:0032991,GO:0034641,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0045111,GO:0046483,GO:0048518,GO:0048522,GO:0050789,GO:0050794,GO:0065007,GO:0070013,GO:0071011,GO:0071013,GO:0071704,GO:0090304,GO:1901360,GO:1902494,GO:1990904
Preferred nameSAP30BP
DescriptionSAP30 binding protein
COG categoryK
Max annot lvl33208|Metazoa
EggNOG OGsKOG2959@1|root,KOG2959@2759|Eukaryota,38F0P@33154|Opisthokonta,3BC1N@33208|Metazoa,3CS5V@33213|Bilateria,481V8@7711|Chordata,494S2@7742|Vertebrata,49QSB@7898|Actinopterygii
Evalue5.08e-12
Seed ortholog244447.XP_008312938.1
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionSAP30-binding protein
Ec32 orthologEc-06_000140.1
TranscriptId154954
TrackFilteredModels1
ProteinId154632
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|154632gene_14822Tribonema minus UTEX_B_3156 geneContig_156 257755..258090 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_14822_1exon_14822_1Tribonema minus UTEX_B_3156 exonContig_156 257755..258090 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_14822CDS_14822Tribonema minus UTEX_B_3156 CDSContig_156 257755..258090 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|154632Trimin1|154632|gw1.156.59.1Tribonema minus UTEX_B_3156 polypeptideContig_156 257755..258090 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_14822 ID=mRNA_14822|Name=jgi.p|Trimin1|154632|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=336bp|location=Sequence derived from alignment at Contig_156:257755..258090+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
GACGACGACGCGATGGCGGTGGATGGCGGCGAAGGCGAAAGCGGCAGTTA
CAGCGGCGACAGTTACAGCGGCGCGCAGGACCGCGTCGCCAAGTACCTGG
CCACCATGCTCAAGAGCAACCGGGACTTCACTGACAGCATCAAGAAGAAG
CAGGAGTTTGGCAATCCCGCCGTGCTGACCAAGATCTGCCAGCACTACGG
CGTGGACGACAGGGGGTCCAACTACCCGCGCGCGCTGTTCGACGCGCACG
GCTACGACATGGCGGACTACTACGACAACATTGCGGCGGAGGCGCGCAAG
CGCCAGCGCGAGGCGCAGCAGCAGCAGCAGCAGCAG
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protein sequence of jgi.p|Trimin1|154632

>Trimin1|154632|gw1.156.59.1 ID=Trimin1|154632|gw1.156.59.1|Name=jgi.p|Trimin1|154632|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=112bp
DDDAMAVDGGEGESGSYSGDSYSGAQDRVAKYLATMLKSNRDFTDSIKKK
QEFGNPAVLTKICQHYGVDDRGSNYPRALFDAHGYDMADYYDNIAAEARK
RQREAQQQQQQQ
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mRNA from alignment at Contig_156:257755..258090+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_14822 ID=mRNA_14822|Name=jgi.p|Trimin1|154632|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=336bp|location=Sequence derived from alignment at Contig_156:257755..258090+ (Tribonema minus UTEX_B_3156 )
GACGACGACGCGATGGCGGTGGATGGCGGCGAAGGCGAAAGCGGCAGTTA CAGCGGCGACAGTTACAGCGGCGCGCAGGACCGCGTCGCCAAGTACCTGG CCACCATGCTCAAGAGCAACCGGGACTTCACTGACAGCATCAAGAAGAAG CAGGAGTTTGGCAATCCCGCCGTGCTGACCAAGATCTGCCAGCACTACGG CGTGGACGACAGGGGGTCCAACTACCCGCGCGCGCTGTTCGACGCGCACG GCTACGACATGGCGGACTACTACGACAACATTGCGGCGGAGGCGCGCAAG CGCCAGCGCGAGGCGCAGCAGCAGCAGCAGCAGCAG
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Coding sequence (CDS) from alignment at Contig_156:257755..258090+

>mRNA_14822 ID=mRNA_14822|Name=jgi.p|Trimin1|154632|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=336bp|location=Sequence derived from alignment at Contig_156:257755..258090+ (Tribonema minus UTEX_B_3156 )
GACGACGACGCGATGGCGGTGGATGGCGGCGAAGGCGAAAGCGGCAGTTA
CAGCGGCGACAGTTACAGCGGCGCGCAGGACCGCGTCGCCAAGTACCTGG
CCACCATGCTCAAGAGCAACCGGGACTTCACTGACAGCATCAAGAAGAAG
CAGGAGTTTGGCAATCCCGCCGTGCTGACCAAGATCTGCCAGCACTACGG
CGTGGACGACAGGGGGTCCAACTACCCGCGCGCGCTGTTCGACGCGCACG
GCTACGACATGGCGGACTACTACGACAACATTGCGGCGGAGGCGCGCAAG
CGCCAGCGCGAGGCGCAGCAGCAGCAGCAGCAGCAG
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