mRNA_1481 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|161953
Unique NamemRNA_1481
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|161953 vs. uniprot
Match: A0A835Z4I9_9STRA (Uncharacterized protein n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z4I9_9STRA)

HSP 1 Score: 367 bits (942), Expect = 2.900e-128
Identity = 191/191 (100.00%), Postives = 191/191 (100.00%), Query Frame = 1 
Query:    1 MPVADRLRDADQKYAVVSIVAPEGTAQKSKDMMIRIYGCRPTIQQANEYARKLRDSNNFFDVYTIETHEWAPLPPRIDSIEDVQCTDERIQSIRDSYIEHLKGQKAELIERLENEEKEIAIKEAQRRALKKERKKYYDKKSRPLVPIAQIPENVRLPRDKAKKPAEVVANDEAEDIFSSDDEAESAQEPKA 573
            MPVADRLRDADQKYAVVSIVAPEGTAQKSKDMMIRIYGCRPTIQQANEYARKLRDSNNFFDVYTIETHEWAPLPPRIDSIEDVQCTDERIQSIRDSYIEHLKGQKAELIERLENEEKEIAIKEAQRRALKKERKKYYDKKSRPLVPIAQIPENVRLPRDKAKKPAEVVANDEAEDIFSSDDEAESAQEPKA
Sbjct:    1 MPVADRLRDADQKYAVVSIVAPEGTAQKSKDMMIRIYGCRPTIQQANEYARKLRDSNNFFDVYTIETHEWAPLPPRIDSIEDVQCTDERIQSIRDSYIEHLKGQKAELIERLENEEKEIAIKEAQRRALKKERKKYYDKKSRPLVPIAQIPENVRLPRDKAKKPAEVVANDEAEDIFSSDDEAESAQEPKA 191
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BLAST of jgi.p|Trimin1|161953 vs. uniprot
Match: A0A835ZEC6_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZEC6_9STRA)

HSP 1 Score: 145 bits (366), Expect = 7.710e-41
Identity = 70/129 (54.26%), Postives = 97/129 (75.19%), Query Frame = 1 
Query:    4 PVADRLRDADQKYAVVSIVAPEGTAQKSKDMMIRIYGCRPTIQQANEYARKLRDSNNFFDVYTIETHEWAPLPPRIDSIEDVQCTDERIQSIRDSYIEHLKGQKAELIERLENEEKEIAIKEAQRRALK 390
            PV   L D+ Q+Y V+++VAPEGT QKS+++ IR++GC+ +I +AN +ARKLRDSN FFDVY ++T+EWAPLPPR+D I+ V  TD R+Q++ DS+ EH KGQK E++ERL    +E    + QR ALK
Sbjct:    6 PVPHHLTDSSQRYCVMTVVAPEGTNQKSEELCIRVHGCKESIAEANRWARKLRDSNTFFDVYVLKTNEWAPLPPRVDEIDSVNFTDGRVQAVFDSHREHQKGQKREMVERLAQAHEE----KTQRAALK 130
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BLAST of jgi.p|Trimin1|161953 vs. uniprot
Match: A0A835Z6B0_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z6B0_9STRA)

HSP 1 Score: 143 bits (360), Expect = 1.750e-39
Identity = 79/188 (42.02%), Postives = 111/188 (59.04%), Query Frame = 1 
Query:    1 MPVADRLRDADQKYAVVSIVAPEGTAQKSKDMMIRIYGCRPTIQQANEYARKLRDSNNFFDVYTIETHEWAPLPPRIDSIEDVQCTDERIQSIRDSYIEHLKGQKAELIERLENEEKEIAIKEAQRRALKKERKKYYDKKSRPLVPIAQIPENVRLPRDKAKKPAEVVANDEAEDIFSSDDEAESAQE 564
            +PV DRL++  Q + V+S++AP GT Q + D+MIR+YGC  T++ AN +AR LRD+N+ +DV  +   EW PLPP  + I+ V  TD+R+  IR++YI HLKG+KA +IERL+ +E                     DKK RP VPI QIP   R    K KK +  V   E  D   +DDE E+ ++
Sbjct:   18 LPVPDRLKNPKQNFTVLSVIAPTGTNQTAPDLMIRVYGCCDTLESANAFARSLRDANDVYDVLVMPNFEWIPLPPNFEEIDYVNYTDKRVTEIRENYISHLKGEKAAMIERLQQDEXXXXXXXXXXXXXXXXXXXXXDKKRRPKVPIDQIPIEYRR---KCKKDSTGVEKLEDSDFSDADDEKEAVED 202
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BLAST of jgi.p|Trimin1|161953 vs. uniprot
Match: A0A835YQY9_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YQY9_9STRA)

HSP 1 Score: 140 bits (354), Expect = 4.310e-39
Identity = 66/129 (51.16%), Postives = 98/129 (75.97%), Query Frame = 1 
Query:    4 PVADRLRDADQKYAVVSIVAPEGTAQKSKDMMIRIYGCRPTIQQANEYARKLRDSNNFFDVYTIETHEWAPLPPRIDSIEDVQCTDERIQSIRDSYIEHLKGQKAELIERLENEEKEIAIKEAQRRALK 390
            PV   L D+ Q+Y V+++VAP GT QK+K+++IR++GCR ++ +AN +A+ LR+ NNFFDVYT++T+EWAPLPPRID I++V  TD R+Q++ DS+ EH KG+K E+++RL    +E    + QR ALK
Sbjct:    6 PVPHHLTDSSQRYCVMTVVAPSGTNQKAKELLIRVHGCRESLAEANRWAKSLRNENNFFDVYTLKTNEWAPLPPRIDEIDNVNFTDGRVQAVFDSHREHQKGEKKEMMQRLAQAHEE----KTQRAALK 130
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BLAST of jgi.p|Trimin1|161953 vs. uniprot
Match: A0A836CF96_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CF96_9STRA)

HSP 1 Score: 132 bits (333), Expect = 6.950e-37
Identity = 55/101 (54.46%), Postives = 84/101 (83.17%), Query Frame = 1 
Query:   34 QKYAVVSIVAPEGTAQKSKDMMIRIYGCRPTIQQANEYARKLRDSNNFFDVYTIETHEWAPLPPRIDSIEDVQCTDERIQSIRDSYIEHLKGQKAELIERL 336
            Q++ V+++VAPEGT QKS+DM+IR+YGC+ T+ +AN +A+ +RDS + +DVY ++T+ WAPLPPRI  I++VQ TD R+Q++ DSY+EH +GQK +++ERL
Sbjct:    1 QRFCVMTVVAPEGTNQKSEDMVIRVYGCKETLAEANRWAKSIRDSCDMWDVYVVKTNSWAPLPPRISEIDEVQFTDARVQAVHDSYVEHQRGQKRDMMERL 101
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BLAST of jgi.p|Trimin1|161953 vs. uniprot
Match: A0A836CNB8_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CNB8_9STRA)

HSP 1 Score: 131 bits (330), Expect = 3.950e-36
Identity = 57/106 (53.77%), Postives = 81/106 (76.42%), Query Frame = 1 
Query:    4 PVADRLRDADQKYAVVSIVAPEGTAQKSKDMMIRIYGCRPTIQQANEYARKLRDSNNFFDVYTIETHEWAPLPPRIDSIEDVQCTDERIQSIRDSYIEHLKGQKAE 321
            PV DRLRD  Q++ V+++VAP GT Q+ KDM+IRI+GC+ T ++A+ +AR LRDSN+F+DVY   T+EW PLPP + ++E+V  TD R+Q I D++   LKG+KAE
Sbjct:   19 PVPDRLRDPRQRFCVLTVVAPRGTGQRCKDMLIRIHGCKETAEEASAWARSLRDSNDFYDVYVASTNEWVPLPPDVSTVEEVGFTDRRVQDIHDNFTAFLKGEKAE 124
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BLAST of jgi.p|Trimin1|161953 vs. uniprot
Match: A0A6C0CR99_9ZZZZ (Uncharacterized protein n=1 Tax=viral metagenome TaxID=1070528 RepID=A0A6C0CR99_9ZZZZ)

HSP 1 Score: 67.8 bits (164), Expect = 1.480e-10
Identity = 32/93 (34.41%), Postives = 52/93 (55.91%), Query Frame = 1 
Query:   13 DRLRDADQKYAVVSIVAPEGTAQKSKDMMIRIYGCRPTIQQANEYARKLRDSNNFFDVYTIETHEWAPLPPRIDSIEDVQCTDERIQSIRDSY 291
            D ++   Q YA++SIVAP  T QKS  + ++I G   T++QA  +A++L + +  FD+     +EW  LPP +D I D    D  + ++   Y
Sbjct:   46 DSIKLPKQNYALISIVAPHATNQKSDKLCVKIKGVFDTLEQAQAHAQRLMNMDATFDIIVTSMYEWLLLPPPLDHIHDQVYMDNELNTLISEY 138
[Close]
BLAST of jgi.p|Trimin1|161953 vs. uniprot
Match: A0A835YPU8_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YPU8_9STRA)

HSP 1 Score: 55.1 bits (131), Expect = 1.470e-6
Identity = 26/39 (66.67%), Postives = 33/39 (84.62%), Query Frame = 1 
Query:  223 PRIDSIEDVQCTDERIQSIRDSYIEHLKGQKAELIERLE 339
            P +  I++VQ TD RIQSIRDSYI+H+KGQK ++IERLE
Sbjct:   54 PHVTQIDNVQFTDSRIQSIRDSYIDHVKGQKRDMIERLE 92
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|161953 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
A0A835Z4I9_9STRA2.900e-128100.00Uncharacterized protein n=2 Tax=Tribonema minus Ta... [more]
A0A835ZEC6_9STRA7.710e-4154.26Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835Z6B0_9STRA1.750e-3942.02Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835YQY9_9STRA4.310e-3951.16Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A836CF96_9STRA6.950e-3754.46Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
A0A836CNB8_9STRA3.950e-3653.77Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
A0A6C0CR99_9ZZZZ1.480e-1034.41Uncharacterized protein n=1 Tax=viral metagenome T... [more]
A0A835YPU8_9STRA1.470e-666.67Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_18contigContig_18:1164407..1164982 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|161953|e_gw1.18.333.1
Max annot lvl10239|Viruses
EggNOG OGs4QE6F@10239|Viruses,4QXY1@35237|dsDNA viruses no RNA stage
Evalue7.65e-12
Seed ortholog97195.Q91DI1_HAV01
Hectar predicted targeting categoryother localisation
TranscriptId162275
TrackFilteredModels1
ProteinId161953
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|161953gene_1481Tribonema minus UTEX_B_3156 geneContig_18 1164407..1164982 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_1481_1exon_1481_1Tribonema minus UTEX_B_3156 exonContig_18 1164407..1164982 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_1481CDS_1481Tribonema minus UTEX_B_3156 CDSContig_18 1164407..1164982 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|161953Trimin1|161953|e_gw1.18.333.1Tribonema minus UTEX_B_3156 polypeptideContig_18 1164407..1164982 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_1481 ID=mRNA_1481|Name=jgi.p|Trimin1|161953|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=576bp|location=Sequence derived from alignment at Contig_18:1164407..1164982+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGCCCGTAGCTGACAGACTGCGCGACGCGGACCAGAAGTATGCCGTGGT
GAGCATAGTAGCACCAGAGGGCACAGCCCAAAAATCCAAGGACATGATGA
TACGCATCTACGGATGCCGCCCGACGATTCAGCAGGCCAATGAGTATGCA
CGCAAGCTGCGTGACTCCAACAATTTCTTTGATGTGTACACGATCGAAAC
GCATGAGTGGGCGCCCCTTCCGCCTCGCATAGACAGCATTGAAGACGTGC
AGTGCACAGACGAGCGCATACAAAGCATTCGGGACTCTTACATTGAACAC
CTCAAGGGGCAGAAGGCTGAGCTGATCGAACGTCTCGAGAATGAAGAGAA
GGAGATCGCTATTAAGGAGGCCCAACGACGGGCGCTCAAGAAGGAGAGGA
AAAAGTATTACGACAAAAAGAGTAGGCCTCTCGTGCCCATAGCTCAAATC
CCCGAAAATGTGCGCCTACCTAGGGACAAGGCTAAGAAGCCTGCTGAAGT
TGTCGCCAATGACGAGGCTGAAGACATCTTTTCAAGTGATGATGAGGCAG
AATCTGCACAGGAGCCAAAGGCATGA
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protein sequence of jgi.p|Trimin1|161953

>Trimin1|161953|e_gw1.18.333.1 ID=Trimin1|161953|e_gw1.18.333.1|Name=jgi.p|Trimin1|161953|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=192bp
MPVADRLRDADQKYAVVSIVAPEGTAQKSKDMMIRIYGCRPTIQQANEYA
RKLRDSNNFFDVYTIETHEWAPLPPRIDSIEDVQCTDERIQSIRDSYIEH
LKGQKAELIERLENEEKEIAIKEAQRRALKKERKKYYDKKSRPLVPIAQI
PENVRLPRDKAKKPAEVVANDEAEDIFSSDDEAESAQEPKA*
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mRNA from alignment at Contig_18:1164407..1164982+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_1481 ID=mRNA_1481|Name=jgi.p|Trimin1|161953|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=576bp|location=Sequence derived from alignment at Contig_18:1164407..1164982+ (Tribonema minus UTEX_B_3156 )
ATGCCCGTAGCTGACAGACTGCGCGACGCGGACCAGAAGTATGCCGTGGT
GAGCATAGTAGCACCAGAGGGCACAGCCCAAAAATCCAAGGACATGATGA
TACGCATCTACGGATGCCGCCCGACGATTCAGCAGGCCAATGAGTATGCA
CGCAAGCTGCGTGACTCCAACAATTTCTTTGATGTGTACACGATCGAAAC
GCATGAGTGGGCGCCCCTTCCGCCTCGCATAGACAGCATTGAAGACGTGC
AGTGCACAGACGAGCGCATACAAAGCATTCGGGACTCTTACATTGAACAC
CTCAAGGGGCAGAAGGCTGAGCTGATCGAACGTCTCGAGAATGAAGAGAA
GGAGATCGCTATTAAGGAGGCCCAACGACGGGCGCTCAAGAAGGAGAGGA
AAAAGTATTACGACAAAAAGAGTAGGCCTCTCGTGCCCATAGCTCAAATC
CCCGAAAATGTGCGCCTACCTAGGGACAAGGCTAAGAAGCCTGCTGAAGT
TGTCGCCAATGACGAGGCTGAAGACATCTTTTCAAGTGATGATGAGGCAG
AATCTGCACAGGAGCCAAAGGCATGA
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Coding sequence (CDS) from alignment at Contig_18:1164407..1164982+

>mRNA_1481 ID=mRNA_1481|Name=jgi.p|Trimin1|161953|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=576bp|location=Sequence derived from alignment at Contig_18:1164407..1164982+ (Tribonema minus UTEX_B_3156 )
ATGCCCGTAGCTGACAGACTGCGCGACGCGGACCAGAAGTATGCCGTGGT
GAGCATAGTAGCACCAGAGGGCACAGCCCAAAAATCCAAGGACATGATGA
TACGCATCTACGGATGCCGCCCGACGATTCAGCAGGCCAATGAGTATGCA
CGCAAGCTGCGTGACTCCAACAATTTCTTTGATGTGTACACGATCGAAAC
GCATGAGTGGGCGCCCCTTCCGCCTCGCATAGACAGCATTGAAGACGTGC
AGTGCACAGACGAGCGCATACAAAGCATTCGGGACTCTTACATTGAACAC
CTCAAGGGGCAGAAGGCTGAGCTGATCGAACGTCTCGAGAATGAAGAGAA
GGAGATCGCTATTAAGGAGGCCCAACGACGGGCGCTCAAGAAGGAGAGGA
AAAAGTATTACGACAAAAAGAGTAGGCCTCTCGTGCCCATAGCTCAAATC
CCCGAAAATGTGCGCCTACCTAGGGACAAGGCTAAGAAGCCTGCTGAAGT
TGTCGCCAATGACGAGGCTGAAGACATCTTTTCAAGTGATGATGAGGCAG
AATCTGCACAGGAGCCAAAGGCATGA
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