mRNA_14792 (mRNA) Tribonema minus UTEX_B_3156
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Overview
Homology
BLAST of jgi.p|Trimin1|353305 vs. uniprot
Match: A0A835Z7Q8_9STRA (Uncharacterized protein n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z7Q8_9STRA) HSP 1 Score: 862 bits (2227), Expect = 9.640e-304 Identity = 756/758 (99.74%), Postives = 756/758 (99.74%), Query Frame = 1
Query: 19 MPDMMVGQRAFFHDGYFWHKDKPKDVRDALALAQRGYQVVRTRDRLPPVEGALNIYVDASKGFAEICRALAAALGKQRNEYAYRSYTNVAMPGFLMWLSEAANDNPPSWITREIMQQLQTTFSVGKAKKADGSKAQAPKTFLPDKDSLWSKWAEACKNIQNVYLPLFASVFPSGVPSGQQEGDILETLRCALWAKDKGEPEGPAAAGQTAVLNTNAATTAGTSAVTPSVAKPMPENWLPRYMLLFILYGPLSDRPLTEFQLVPSSGPTCAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPVIKRCGLTSRRRLKQQQQKQLRSERGLPSLSDEERANKRQVVAALKASTKEARALRNAVKTHANGVARKQQLDELKLRVELLAGDPVREAEARATLLAFLDGGSSNGHSFDRANKDDSSDGDSSSCSSGHSAARNRHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSSALNIGGASALMDSFGGAQRSGDGANAAAPXXXXXXXXXXXXXXXXXXXXXXXXXXXHXXXXSIARGGGMRGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSPAFLGVXXXXXXXXXXXXXXXXXXXDGAGALXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGVGGAGALAANLGSEFGVDGIGXTFGXXXXXXXXXXXXXXXXXXXXXXXXXXXIPSALAMLAVAA 2292
MPDMMVGQRAFFHDGYFWHKDKPKDVRDALALAQRGYQVVRTRDRLPPVEGALNIYVDASKGFAEICRALAAALGKQRNEYAYRSYTNVAMPGFLMWLSEAANDNPPSWITREIMQQLQTTFSVGKAKKADGSKAQAPKTFLPDKDSLWSKWAEACKNIQNVYLPLFASVFPSGVPSGQQEGDILETLRCALWAKDKGEPEGPAAAGQTAVLNTNAATTAGTSAVTPSVAKPMPENWLPRYMLLFILYGPLSDRPLTEFQLVPSSGPTCAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPVIKRCGLTSRRRLKQQQQKQLRSERGLPSLSDEERANKRQVVAALKASTKEARALRNAVKTHANGVARKQQLDELKLRVELLAGDPVREAEARATLLAFLDGGSSNGHSFDRANKDDSSDGDSSSCSSGHSAARNRHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSSALNIGGASALMDSFGGAQRSGDGANAAAPXXXXXXXXXXXXXXXXXXXXXXXXXXXHXXXXSIARGGGMRGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSPAFLGVXXXXXXXXXXXXXXXXXXXDGAGALXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGVGGAGALAANLGSEFGVDGIG TFG XXXXXXXXXXXXXXXXXXXXXXXXXXIPSALAMLAVAA
Sbjct: 1 MPDMMVGQRAFFHDGYFWHKDKPKDVRDALALAQRGYQVVRTRDRLPPVEGALNIYVDASKGFAEICRALAAALGKQRNEYAYRSYTNVAMPGFLMWLSEAANDNPPSWITREIMQQLQTTFSVGKAKKADGSKAQAPKTFLPDKDSLWSKWAEACKNIQNVYLPLFASVFPSGVPSGQQEGDILETLRCALWAKDKGEPEGPAAAGQTAVLNTNAATTAGTSAVTPSVAKPMPENWLPRYMLLFILYGPLSDRPLTEFQLVPSSGPTCAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPVIKRCGLTSRRRLKQQQQKQLRSERGLPSLSDEERANKRQVVAALKASTKEARALRNAVKTHANGVARKQQLDELKLRVELLAGDPVREAEARATLLAFLDGGSSNGHSFDRANKDDSSDGDSSSCSSGHSAARNRHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSSALNIGGASALMDSFGGAQRSGDGANAAAPXXXXXXXXXXXXXXXXXXXXXXXXXXXHXXXXSIARGGGMRGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSPAFLGVXXXXXXXXXXXXXXXXXXXDGAGALXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGVGGAGALAANLGSEFGVDGIGGTFGVXXXXXXXXXXXXXXXXXXXXXXXXXXIPSALAMLAVAA 758
BLAST of jgi.p|Trimin1|353305 vs. uniprot
Match: A0A835ZGC3_9STRA (Uncharacterized protein n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZGC3_9STRA) HSP 1 Score: 666 bits (1719), Expect = 1.370e-223 Identity = 610/679 (89.84%), Postives = 610/679 (89.84%), Query Frame = 1
Query: 244 KQRNEYAYRSYTNVAMPGFLMWLSEAANDNPPSWITREIMQQLQTTFSVGKAKKADGSKAQAPKTFLPDKDSLWSKWAEACKNIQNVYLPLFASVFPSGVPSGQQEGDILETLRCALWAKDKGEPEGPAAAGQTA-----------------------------VLNTNAATTAGTSAVTPSVAKPMPENWLPRYMLLFILYGPLSDRPLTEFQLVPSSGPTCAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPVIKRCGLTSRRRLKQQQQKQLRSERGLPSLSDEERANKRQVVAALKASTKEARALRNAVKTHANGVARKQQLDELKLRVELLAGDPVREAEARATLLAFLDGGSSNGHSFDRANKDDSSDGDSSSCSSGHSAARNRHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSSALNIGGASALMDSFGGAQRSGDGANAAAPXXXXXXXXXXXXXXXXXXXXXXXXXXXHXXXXSIARGGGMRGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX----------SPAFLGVXXXXXXXXXXXXXXXXXXXDGAGALXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGVGGAGALAANLGSEFGVDGIG 2163
KQRNEYAYRSYTNVAMPGFL WLSEAANDNPPSWITREIMQQLQTTFSVGKAKKADGSKAQAPKTFLPDKDSLWSKWAEACKNIQNVYLPLFASVFPSGVPSGQQEGDILETLRCALWAKDKGEPEGPAAAGQTA VLNTNAATTAGTSAVTPSVAKPMPENWLPRYMLLFILYGPLSDRPLTEFQLVPSSGPTCAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPVIKRCGLTSRRRLKQQQQKQLRSERGLPSLSDEERANKRQVVAALKASTKEARALRNAVKTHANGVARKQQLDELKLRVELLAGDPVREAEARATLLAFLDGGSSNGHSFDRANKDDSSDGDSSSCSSGH AARNRHXXXXXXX XXXXXX XXXXXXXXXXXXXSSALNIGGASALMDSFGGAQRSGDGANAAAPXXXXXXXXXXXXXXXXXXXXXXXXXXXH XX SIARGGGMRG XXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXX XXXXXXXX XXXXXXXXXXXXXXXXXXXXX SPAFLGV XXXXXXXXXXXXXXXXXDGAGALXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGVGGAGALAANLGSEFGVDGIG
Sbjct: 221 KQRNEYAYRSYTNVAMPGFLKWLSEAANDNPPSWITREIMQQLQTTFSVGKAKKADGSKAQAPKTFLPDKDSLWSKWAEACKNIQNVYLPLFASVFPSGVPSGQQEGDILETLRCALWAKDKGEPEGPAAAGQTAGDGTELCGHYGADGDGSLMAGTGAAAAAAVLNTNAATTAGTSAVTPSVAKPMPENWLPRYMLLFILYGPLSDRPLTEFQLVPSSGPTCAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPVIKRCGLTSRRRLKQQQQKQLRSERGLPSLSDEERANKRQVVAALKASTKEARALRNAVKTHANGVARKQQLDELKLRVELLAGDPVREAEARATLLAFLDGGSSNGHSFDRANKDDSSDGDSSSCSSGHGAARNRHXXXXXXXAGVSACGGGXXXXXXLXXXXXXXXXXXXXSSALNIGGASALMDSFGGAQRSGDGANAAAPXXXXXXXXXXXXXXXXXXXXXXXXXXXHGXXGSIARGGGMRGRXXXXXXXXXXXXXXXXXXAAIPGXXXXXXXXXXXXXXXXXXXXVHSGXXXXXXXXLATFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSPAFLGVSFXXXXXXXXXXXXXXXXXDGAGALXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGVGGAGALAANLGSEFGVDGIG 899
BLAST of jgi.p|Trimin1|353305 vs. uniprot
Match: A0A835YUM3_9STRA (Uncharacterized protein n=4 Tax=Tribonema minus TaxID=303371 RepID=A0A835YUM3_9STRA) HSP 1 Score: 557 bits (1435), Expect = 7.820e-181 Identity = 584/690 (84.64%), Postives = 590/690 (85.51%), Query Frame = 1
Query: 244 KQRNEYAYRSYTNVAMPGFLMWLSEAANDNPPSWITREIMQQLQTTFSVGKAKKADGSKAQAPKTFLPDKDSLWSKWAEACKNIQNVYLPLFASVFPSGVPSGQQEGDILETLRCAL------------------------WAKD-KGEPE------------------------GPAAAGQTAVLNTNAATTAGTSAVTPSVAKPMPENWLPRYMLLFILYGPLSDRPLTEFQLVPSSGPTCAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPVIKRCGLTSRRRLKQQQQKQLRSERGLPSLSDEERANKRQVVAALKASTKEARALRNAVKTHANGVARKQQLDELKLRVELLAGDPVREAEARATLLAFLDGGSSNGHSFDRANKDDSSDGDSSSCSSGHSAARNRHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSSALNIGGASALMDSFGGAQRSGDGANAAAPXXXXXXXXXXXXXXXXXXXXXXXXXXXHXXXXSIARGGGMRGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX--SPAFLGVXXXXXXXXXXXXXXXXXXXDGAGALXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGVGGAGALAANLGSEFGVDGI 2160
KQRNEYAYRSYTNVAMPGFL WLSEAANDNPPSWITREIM LQTTFSVGKAKKADGSKAQAPKTFLPDKDSLWSKWAEACKNIQNVYLP P ++ + + RCA+ W D K P G AA AVLNTNAATTAGTSAVTPSVAKPMPENWLPRYMLLFILYGPLSDRPLTEFQL PSSGPTCAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPVIKRCGLTSRRRLKQQQQKQLRSERGLPSLSDEERANKRQVVAALKASTKEARALRNAVKTHAN VARKQQLDELKLRVELLAGDPVREAEARATLLAFLDGGSSNGHSFDRANKDDSSDGDSSSCSSGH+AARNR XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSSALNIGGASALMDSFGGAQRSGDGANAAAPXXXXXXXXXXXXXXXXXXXXXXXXXX H XXXSIARGGGMRG XXXXXXXXX XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXXXXXXXX SPAFLGVXXXXXXXXXXXXXXXXXXXDGAGA XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGVGGAGALAANLGSEFGVDGI
Sbjct: 240 KQRNEYAYRSYTNVAMPGFLKWLSEAANDNPPSWITREIM--LQTTFSVGKAKKADGSKAQAPKTFLPDKDSLWSKWAEACKNIQNVYLPSLQVCSPLVYLRDSRK--VTSSKRCAVHSGPRTRASQRALQQQAKQQLSTVWFGDCKQRPHRMRSCDGTELCGHYGADGDGSLMAGTGAAAAAAVLNTNAATTAGTSAVTPSVAKPMPENWLPRYMLLFILYGPLSDRPLTEFQLAPSSGPTCAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPVIKRCGLTSRRRLKQQQQKQLRSERGLPSLSDEERANKRQVVAALKASTKEARALRNAVKTHANAVARKQQLDELKLRVELLAGDPVREAEARATLLAFLDGGSSNGHSFDRANKDDSSDGDSSSCSSGHAAARNRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSSALNIGGASALMDSFGGAQRSGDGANAAAPXXXXXXXXXXXXXXXXXXXXXXXXXXSHGXXXSIARGGGMRGGXXXXXXXXXGAAIPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLATFGDXXXXXXXXXXXXXXXXXXXXXXXXXXXXGSPAFLGVXXXXXXXXXXXXXXXXXXXDGAGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGVGGAGALAANLGSEFGVDGI 925
BLAST of jgi.p|Trimin1|353305 vs. uniprot
Match: A0A835YYI8_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YYI8_9STRA) HSP 1 Score: 167 bits (422), Expect = 1.090e-39 Identity = 78/81 (96.30%), Postives = 80/81 (98.77%), Query Frame = 1
Query: 1 KWEEVVMPDMMVGQRAFFHDGYFWHKDKPKDVRDALALAQRGYQVVRTRDRLPPVEGALNIYVDASKGFAEICRALAAALG 243
KWEEVVMPD++VGQRAFFHDGYFWHKDKPKDVRDALALAQRGYQVVRTRDRLPPVEGALNIYVDASKGF EICRALAAALG
Sbjct: 510 KWEEVVMPDVVVGQRAFFHDGYFWHKDKPKDVRDALALAQRGYQVVRTRDRLPPVEGALNIYVDASKGFTEICRALAAALG 590
BLAST of jgi.p|Trimin1|353305 vs. uniprot
Match: A0A836CB94_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CB94_9STRA) HSP 1 Score: 134 bits (336), Expect = 1.980e-32 Identity = 64/71 (90.14%), Postives = 65/71 (91.55%), Query Frame = 1
Query: 31 MVGQRAFFHDGYFWHKDKPKDVRDALALAQRGYQVVRTRDRLPPVEGALNIYVDASKGFAEICRALAAALG 243
MV QRAFFHDGYFWHK KPKDVRD LALAQRGYQVVRTRDRLPPVEGALNI VDAS+GF EICR LAAALG
Sbjct: 1 MVEQRAFFHDGYFWHKHKPKDVRDTLALAQRGYQVVRTRDRLPPVEGALNIDVDASRGFTEICRTLAAALG 71
BLAST of jgi.p|Trimin1|353305 vs. uniprot
Match: A0A835ZFF0_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZFF0_9STRA) HSP 1 Score: 90.9 bits (224), Expect = 3.380e-15 Identity = 43/84 (51.19%), Postives = 59/84 (70.24%), Query Frame = 1
Query: 16 VMPDMMVGQRAFFHDGYFWHKDKPKDVRDALALAQRGYQVVRTRDRLPPVE--GALNIYVDASKGFAEICRALAAALGKQRNEY 261
+MPDM+VG +AFFHDG +H+ KPKD+ D LAL GY VVRTRD +P ++ G LN+ VDA KG ++ LA+ALG +++
Sbjct: 447 IMPDMLVGTQAFFHDGRRYHEHKPKDLLDTLALLDAGYTVVRTRDMIPDIDVPGVLNVRVDARKGCQQVSHDLASALGVSDSDW 530 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|353305 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 6
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_14792 ID=mRNA_14792|Name=jgi.p|Trimin1|353305|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=2577bp|location=Sequence derived from alignment at Contig_156:82776..89156+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. AAGTGGGAAGAGGTGGTGATGCCAGACATGATGGTAGGGCAGCGTGCATTback to top protein sequence of jgi.p|Trimin1|353305 >Trimin1|353305|estExt_Genemark1.C_Ctg_1560007 ID=Trimin1|353305|estExt_Genemark1.C_Ctg_1560007|Name=jgi.p|Trimin1|353305|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=759bp MPDMMVGQRAFFHDGYFWHKDKPKDVRDALALAQRGYQVVRTRDRLPPVEback to top mRNA from alignment at Contig_156:82776..89156+ Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_14792 ID=mRNA_14792|Name=jgi.p|Trimin1|353305|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=6381bp|location=Sequence derived from alignment at Contig_156:82776..89156+ (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_156:82776..89156+ >mRNA_14792 ID=mRNA_14792|Name=jgi.p|Trimin1|353305|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=2277bp|location=Sequence derived from alignment at Contig_156:82776..89156+ (Tribonema minus UTEX_B_3156 )back to top |