mRNA_14772 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|351330
Unique NamemRNA_14772
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|351330 vs. uniprot
Match: A0A836C7H5_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C7H5_9STRA)

HSP 1 Score: 254 bits (648), Expect = 1.150e-83
Identity = 153/153 (100.00%), Postives = 153/153 (100.00%), Query Frame = 1 
Query:    1 MAWPPLLLLLLLPLAAIALPLLAPALCVLHRPAGRGGGPGIIIPSAGYGGGIGGGGGHCGEALQYPGYAWQPRVRPGASSVALLHAATAAATIGIAATRSALPPPDAFPAAATASLTAXXXXXXXXXXDTVSSLGHRGPSAIAAVRGVADAAI 459
            MAWPPLLLLLLLPLAAIALPLLAPALCVLHRPAGRGGGPGIIIPSAGYGGGIGGGGGHCGEALQYPGYAWQPRVRPGASSVALLHAATAAATIGIAATRSALPPPDAFPAAATASLTAXXXXXXXXXXDTVSSLGHRGPSAIAAVRGVADAAI
Sbjct:    1 MAWPPLLLLLLLPLAAIALPLLAPALCVLHRPAGRGGGPGIIIPSAGYGGGIGGGGGHCGEALQYPGYAWQPRVRPGASSVALLHAATAAATIGIAATRSALPPPDAFPAAATASLTAXXXXXXXXXXDTVSSLGHRGPSAIAAVRGVADAAI 153
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|351330 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A836C7H5_9STRA1.150e-83100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_87contigContig_87:399718..400991 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|351330|estExt_Genemark1.C_Ctg_870047
Hectar predicted targeting categorysignal peptide
TranscriptId351652
TrackFilteredModels1
ProteinId351330
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|351330gene_14772Tribonema minus UTEX_B_3156 geneContig_87 399718..400991 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|351330Trimin1|351330|estExt_Genemark1.C_Ctg_870047Tribonema minus UTEX_B_3156 polypeptideContig_87 399718..400809 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_14772_1exon_14772_1Tribonema minus UTEX_B_3156 exonContig_87 399718..399814 +
exon_14772_2exon_14772_2Tribonema minus UTEX_B_3156 exonContig_87 400141..400222 +
exon_14772_3exon_14772_3Tribonema minus UTEX_B_3156 exonContig_87 400410..400469 +
exon_14772_4exon_14772_4Tribonema minus UTEX_B_3156 exonContig_87 400587..400991 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_14772CDS_14772Tribonema minus UTEX_B_3156 CDSContig_87 399718..399814 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR3_14772UTR3_14772Tribonema minus UTEX_B_3156 three_prime_UTRContig_87 400810..400991 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_14772 ID=mRNA_14772|Name=jgi.p|Trimin1|351330|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=644bp|location=Sequence derived from alignment at Contig_87:399718..400991+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGGCGTGGCCGCCGCTGCTGCTGCTGCTGCTGCTGCCGCTCGCTGCCAT
CGCTCTGCCGCTGCTCGCGCCCGCCCTTTGCGTGCTCCATAGACCCGCGG
GCCGCGGCGGCGGTCCGGGCATCATCATCCCGTCAGCAGGGTACGGTGGC
GGCATTGGAGGCGGTGGCGGCCACTGTGGGGAAGCGCTGCAGTACCCCGG
TTATGCTTGGCAGCCACGCGTGCGGCCGGGTGCCAGCAGTGTGGCGCTGC
TGCACGCTGCTACCGCCGCCGCCACCATCGGCATTGCCGCCACTCGCAGC
GCGCTGCCTCCGCCTGATGCGTTCCCCGCCGCTGCCACCGCCAGCCTCAC
CGCCGCCACCGCCGCCACTGCGCGTGCTACCGCTGACACCGTCAGTTCCC
TGGGCCATCGCGGCCCGAGCGCCATTGCTGCTGTCCGCGGCGTGGCCGAC
GCTGCCATTTAAGAGGTTCCTTGCTGCGTTTGTGCTAGCGCCCCCCCCGT
CGCGGGCTCTGCCGCCGTGCCCATGGCTGCCGACTGATACTGACACCGGA
CTGTCAATGCGTGGCTGGCTCTGGCGCGCGCCGTCAATGGGGCTGTCAGG
CGGCCTGTTCTCTGAGCGCTGAGGCTGGGGCTGAGTGCTGTGCG
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protein sequence of jgi.p|Trimin1|351330

>Trimin1|351330|estExt_Genemark1.C_Ctg_870047 ID=Trimin1|351330|estExt_Genemark1.C_Ctg_870047|Name=jgi.p|Trimin1|351330|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=154bp
MAWPPLLLLLLLPLAAIALPLLAPALCVLHRPAGRGGGPGIIIPSAGYGG
GIGGGGGHCGEALQYPGYAWQPRVRPGASSVALLHAATAAATIGIAATRS
ALPPPDAFPAAATASLTAATAATARATADTVSSLGHRGPSAIAAVRGVAD
AAI*
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mRNA from alignment at Contig_87:399718..400991+

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_14772 ID=mRNA_14772|Name=jgi.p|Trimin1|351330|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1274bp|location=Sequence derived from alignment at Contig_87:399718..400991+ (Tribonema minus UTEX_B_3156 )
ATGGCGTGGCCGCCGCTGCTGCTGCTGCTGCTGCTGCCGCTCGCTGCCAT
CGCTCTGCCGCTGCTCGCGCCCGCCCTTTGCGTGCTCCATAGACCCGGTA
TGGTGCATGCGCATGGAGGGCGCTGCCTGTTGAGCCGCCCGCCGACGCCT
GCCGTTTCAGAGCGCCGCGCTGCGCCTGCTGCTGCTGTTCCGCTGGCGCG
CTCAGCGCGTCCGCCGCTGCTATGATGCTGGCGAGACCGTGCAGGTGCCT
GCTCCCACCTCTTCCTGGCTCCGACTGCCTTGATCCTGCCTCACTGGCCT
GGGAGCCCGTGCTGCCGTCACGGCGGTGACTACGCGGCGACTGATGTAAT
GATGCGTCGCTGTTTGGGCTGCTTGCGCTCGCTGATTGAATTTGGCGTTG
AACTTCGCTCGTGCGCTCCACAGCGGGCCGCGGCGGCGGTCCGGGCATCA
TCATCCCGTCAGCAGGGTACGGTGGCGGCATTGGAGGCGGTGGCGGCCAC
TGTGGGTACGCCACCGTGTTGAGAGCGTAGGGGTAGTACAAGCCTTGCTG
AAACGGTGGATAGCTGTGGGGAAGGGCTGGTACCGAATGTTGGGCGGCGG
CGCGGCATGGTAGGGGGGGTACATGGGGCTGTGAGACATGGGCGCATGTT
GTGTCGTCACTGGTGTGGCCGTGGGCGGCGCGCCAACCTCAGGGAAGCGC
TGCAGTACCCCGGTTATGCTTGGCAGCCACGCGTGCGGCCGGGTGCCAGC
AGGTCCGACAGCGCCGCCATCAGCCCTGTTGCCGCCGCCGCTGCCATCGC
CTCCAACACCGATCGTGTCGCTGGCGCTGCTGCCCCGTGGCGCCATGTGC
ATGCCGTTCTGCAAACCAGTGTGGCGCTGCTGCACGCTGCTACCGCCGCC
GCCACCATCGGCATTGCCGCCACTCGCAGCGCGCTGCCTCCGCCTGATGC
GTTCCCCGCCGCTGCCACCGCCAGCCTCACCGCCGCCACCGCCGCCACTG
CGCGTGCTACCGCTGACACCGTCAGTTCCCTGGGCCATCGCGGCCCGAGC
GCCATTGCTGCTGTCCGCGGCGTGGCCGACGCTGCCATTTAAGAGGTTCC
TTGCTGCGTTTGTGCTAGCGCCCCCCCCGTCGCGGGCTCTGCCGCCGTGC
CCATGGCTGCCGACTGATACTGACACCGGACTGTCAATGCGTGGCTGGCT
CTGGCGCGCGCCGTCAATGGGGCTGTCAGGCGGCCTGTTCTCTGAGCGCT
GAGGCTGGGGCTGAGTGCTGTGCG
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Coding sequence (CDS) from alignment at Contig_87:399718..400991+

>mRNA_14772 ID=mRNA_14772|Name=jgi.p|Trimin1|351330|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=462bp|location=Sequence derived from alignment at Contig_87:399718..400991+ (Tribonema minus UTEX_B_3156 )
ATGGCGTGGCCGCCGCTGCTGCTGCTGCTGCTGCTGCCGCTCGCTGCCAT
CGCTCTGCCGCTGCTCGCGCCCGCCCTTTGCGTGCTCCATAGACCCGCGG
GCCGCGGCGGCGGTCCGGGCATCATCATCCCGTCAGCAGGGTACGGTGGC
GGCATTGGAGGCGGTGGCGGCCACTGTGGGGAAGCGCTGCAGTACCCCGG
TTATGCTTGGCAGCCACGCGTGCGGCCGGGTGCCAGCAGTGTGGCGCTGC
TGCACGCTGCTACCGCCGCCGCCACCATCGGCATTGCCGCCACTCGCAGC
GCGCTGCCTCCGCCTGATGCGTTCCCCGCCGCTGCCACCGCCAGCCTCAC
CGCCGCCACCGCCGCCACTGCGCGTGCTACCGCTGACACCGTCAGTTCCC
TGGGCCATCGCGGCCCGAGCGCCATTGCTGCTGTCCGCGGCGTGGCCGAC
GCTGCCATTTAA
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