mRNA_1473 (mRNA) Tribonema minus UTEX_B_3156
Overview
Homology
BLAST of jgi.p|Trimin1|161948 vs. uniprot
Match: A0A836CJ77_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJ77_9STRA) HSP 1 Score: 327 bits (838), Expect = 1.470e-113 Identity = 156/156 (100.00%), Postives = 156/156 (100.00%), Query Frame = 1 Query: 1 MTERFSDPPTGTPVVDQGGFGIVPWGAASNFEDKTAKWIWTSPNARFSAAVGTYDFAAQYKIMSTTPVTATLHILVDNDADVFLNGSKVGSASLGFSAQDYARIPMTLVWGVNDIVLHCTNTGVGPAGVCASLIDDASKTPLLHTEGSRWVYNKVQ 468 MTERFSDPPTGTPVVDQGGFGIVPWGAASNFEDKTAKWIWTSPNARFSAAVGTYDFAAQYKIMSTTPVTATLHILVDNDADVFLNGSKVGSASLGFSAQDYARIPMTLVWGVNDIVLHCTNTGVGPAGVCASLIDDASKTPLLHTEGSRWVYNKVQ Sbjct: 1 MTERFSDPPTGTPVVDQGGFGIVPWGAASNFEDKTAKWIWTSPNARFSAAVGTYDFAAQYKIMSTTPVTATLHILVDNDADVFLNGSKVGSASLGFSAQDYARIPMTLVWGVNDIVLHCTNTGVGPAGVCASLIDDASKTPLLHTEGSRWVYNKVQ 156
BLAST of jgi.p|Trimin1|161948 vs. uniprot
Match: A0A836CLV6_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CLV6_9STRA) HSP 1 Score: 281 bits (720), Expect = 4.210e-95 Identity = 132/155 (85.16%), Postives = 142/155 (91.61%), Query Frame = 1 Query: 1 MTERFSDPPTGTPVVDQGGFGIVPWGAASNFEDKTAKWIWTSPNARFSAAVGTYDFAAQYKIMSTTPVTATLHILVDNDADVFLNGSKVGSASLGFSAQDYARIPMTLVWGVNDIVLHCTNTGVGPAGVCASLIDDASKTPLLHTEGSRWVYNKV 465 + ERFS+ P GTPVVDQGGFG VPWG+AS FEDKTAKWIWTSPNARFSA VG+Y+FAAQ KIMS TPVTA LHILVDNDAD++LNG KVGSASLGFSA+DY+RIP+TLVWGVNDIVL CTNTGVGPAGVCASLIDD SKTPLL TEGSRWVYNKV Sbjct: 33 VLERFSEQPVGTPVVDQGGFGTVPWGSASQFEDKTAKWIWTSPNARFSAPVGSYNFAAQLKIMSVTPVTAMLHILVDNDADIYLNGEKVGSASLGFSARDYSRIPLTLVWGVNDIVLRCTNTGVGPAGVCASLIDDVSKTPLLKTEGSRWVYNKV 187
BLAST of jgi.p|Trimin1|161948 vs. uniprot
Match: A0A835Z862_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z862_9STRA) HSP 1 Score: 161 bits (407), Expect = 4.070e-48 Identity = 72/139 (51.80%), Postives = 95/139 (68.35%), Query Frame = 1 Query: 43 VDQGGFGIVPWGAASNFEDKTAKWIWTSPNARFSAAVGTYDFAAQYKIMSTTPVTATLHILVDNDADVFLNGSKVGSASLGFSAQDYARIPMTLVWGVNDIVLHCTNTGVGPAGVCASLIDDASKTPLLHTEGSRWVYN 459 V QGGFG+VPWG AS F D TA W+WT NARFSA GT DF+ S A +H+LVDNDADVFLN +KVGS S+GFS ++YA+IP+ L WG + + C N+G GPAG+ +++D AS ++ ++ S WV+N Sbjct: 2 VSQGGFGVVPWGGASQFIDPTATWLWTQTNARFSAPAGTVDFSTLITNSSQQDKQALIHMLVDNDADVFLNDAKVGSGSMGFSVREYAKIPIALPWGTSTLRFRCVNSGTGPAGLLVAVVDAASGVTIVKSDPSSWVFN 140
BLAST of jgi.p|Trimin1|161948 vs. uniprot
Match: A0A835ZCJ5_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZCJ5_9STRA) HSP 1 Score: 148 bits (374), Expect = 4.050e-43 Identity = 67/139 (48.20%), Postives = 94/139 (67.63%), Query Frame = 1 Query: 43 VDQGGFGIVPWGAASNFEDKTAKWIWTSPNARFSAAVGTYDFAAQYKIMSTTPVTATLHILVDNDADVFLNGSKVGSASLGFSAQDYARIPMTLVWGVNDIVLHCTNTGVGPAGVCASLIDDASKTPLLHTEGSRWVYN 459 V+QGG+G +PWG A+ F + +A W+WT NARFSA T DF+ S A +HILVDNDA ++LN KVGSAS+GFS QDY ++P+++ WG + + + NTG GPAG+ +++D AS T L+ T+ S WV+N Sbjct: 2 VNQGGYGAIPWGGAAKFIEPSAMWLWTQNNARFSAPPATIDFSTLITNSSQDDQQAVIHILVDNDAVIYLNDIKVGSASMGFSNQDYNKLPVSIPWGTSTLRIRAMNTGQGPAGLIVAVVDAASGTTLVKTDPSSWVFN 140
BLAST of jgi.p|Trimin1|161948 vs. uniprot
Match: A0A4V1IRM8_9FUNG (Uncharacterized protein n=1 Tax=Blyttiomyces helicus TaxID=388810 RepID=A0A4V1IRM8_9FUNG) HSP 1 Score: 127 bits (319), Expect = 1.030e-31 Identity = 62/139 (44.60%), Postives = 89/139 (64.03%), Query Frame = 1 Query: 28 TGTPVVDQGGFGIVPWGAASNFEDKTAKWIWTSPNARFSAAVGTYDFAAQYKIMSTTPVTATLHILVDNDADVFLNGSKVGSASLGFSAQDYARIPMTLVWGVNDIVLHCTNTGVGPAGVCASLIDDASKTPLLHTEGS 444 TGTPV + G FG++PWG+ S F D TA WIW + A +A G+ F QY S ++ATLHIL D+ A +F+NG+ +G+A+ G++ Y ++P+ L G N I + TN GPAG+CASLI +S + LLHT+ + Sbjct: 335 TGTPVFNLGNFGMLPWGSTSKFADTTASWIWNTTTAAQNAPAGSVTFVNQYYNSSNNTISATLHILADDSATIFVNGTNIGTATAGWAITSYTQLPVNLTPGSNLISIVATNAS-GPAGLCASLIS-SSNSVLLHTDAT 471
BLAST of jgi.p|Trimin1|161948 vs. uniprot
Match: A0A4P9WB35_9FUNG (Uncharacterized protein (Fragment) n=1 Tax=Blyttiomyces helicus TaxID=388810 RepID=A0A4P9WB35_9FUNG) HSP 1 Score: 111 bits (277), Expect = 7.190e-26 Identity = 56/139 (40.29%), Postives = 83/139 (59.71%), Query Frame = 1 Query: 28 TGTPVVDQGGFGIVPWGAASNFEDKTAKWIWTSPNARFSAAVGTYDFAAQYKIMSTTPVTATLHILVDNDADVFLNGSKVGSASLGFSAQDYARIPMTLVWGVNDIVLHCTNTGVGPAGVCASLIDDASKTPLLHTEGS 444 TGT V++ G FG+ PWG+ SNF D + WIW + A +A G+ +Y S ++ATLHIL D+ A +F+NG+ +G+A+ G++ Y +P+ L G N I + TN GPA +CA LI +S + L HTE + Sbjct: 305 TGTQVLNLGNFGMCPWGSTSNFADTISSWIWNTLMAAKNAPAGSVTCVNEYYNSSNNTISATLHILADDSATIFVNGTNIGTATAGWAKTSYTMLPVNLTPGANLISIVATNAS-GPARLCACLIS-SSYSVLFHTEAT 441
BLAST of jgi.p|Trimin1|161948 vs. uniprot
Match: A0A7J7PL87_9CHLO (Uncharacterized protein n=1 Tax=Scenedesmus sp. NREL 46B-D3 TaxID=2650976 RepID=A0A7J7PL87_9CHLO) HSP 1 Score: 108 bits (269), Expect = 5.170e-25 Identity = 64/159 (40.25%), Postives = 95/159 (59.75%), Query Frame = 1 Query: 1 MTERFSDPP-TGTPVVDQGGFGIVPWGAASNFEDKTAKWIWTSPNARFSAAVGT-YDFAAQYKIMSTTPVTATLHILVDNDADV-----FLNGSKVGSASLG-FSAQDYARIPMTLVWGVNDIVLHCTNTGVGPAGVCASLIDDASKTPLLHTEGSRWV 453 + R PP TGT + G +G+ PWG+A+ F A+WIW S A SA VGT F++QY + P+ ATLH+++D+ V LNGS+ ++G + +DY+++P+TL G N + + +N G GPAG A+L+D AS + LLHT G+ WV Sbjct: 78 IARRVRPPPLTGTSANELGKYGMAPWGSAAAFVAPDAQWIWNSSTAATSAPVGTGVKFSSQYFHDADAPIAATLHVVLDDRGAVKVNGQLLNGSQGHQVAMGGWETKDYSKMPVTLQPGNNTVDIFASNLG-GPAGALAALVDAASGSILLHTNGT-WV 234
BLAST of jgi.p|Trimin1|161948 vs. uniprot
Match: A0A8J4CWM7_9CHLO (Uncharacterized protein n=1 Tax=Volvox reticuliferus TaxID=1737510 RepID=A0A8J4CWM7_9CHLO) HSP 1 Score: 73.2 bits (178), Expect = 5.050e-13 Identity = 49/150 (32.67%), Postives = 75/150 (50.00%), Query Frame = 1 Query: 40 VVDQGGFGIVPWGAASN-----FEDKTAKWIWTSPNA-RFSAAVGTYDFAAQYKIMSTTPVTATLHILVDNDADVFLNGSKVGSASLGFSAQDYARIP-----MTLVWGVNDIVLHCTNTGVGPAGVCASLIDDASKTPLLHTEGSRWVY 456 V+ G G+ PWG+++ F D AKWIW PNA + ++A+ T F+ + + L ++VD+ ADV++NG+ V S G++ Y P +TL G N I + TN+ AG+ AS+ T L T S W+Y Sbjct: 37 AVELGPAGMAPWGSSNIGPMQLFTDTQAKWIWAEPNADKGTSAITTATFSITI-VSACQETQVVLRLIVDDLADVYVNGALVVSMKWGWNNNTYPGTPGQPVTLTLARGTNTISVRATNSFGEAAGLLASISSKDDGTVLTRTS-SAWMY 184
BLAST of jgi.p|Trimin1|161948 vs. uniprot
Match: D8TKU9_VOLCA (Uncharacterized protein n=1 Tax=Volvox carteri f. nagariensis TaxID=3068 RepID=D8TKU9_VOLCA) HSP 1 Score: 70.5 bits (171), Expect = 3.820e-12 Identity = 46/143 (32.17%), Postives = 69/143 (48.25%), Query Frame = 1 Query: 58 FGIVPWGAASNFEDKTAKWIWTSPNARFSAAVGTYD-------FAAQYKIMSTTPVTATLHILVDNDADVFLNGSKVGSASLGFSAQDYARIPMT--LVWGVNDIVLHCTNTGVGPAGVCASLIDDASKTPLLHTEGSRWVYN 459 +G G A F D +AKWIW N S + T F + + A LHI+ D+DA++++NG + S + G+++ Y P+T LV G N + + N+G GPA + ASL +T L T+ S W N Sbjct: 39 YGTDNIGVAKPFFDLSAKWIWYHTNGAGSGSNRTSSGQSIAPLFIKTITVSTAGGTQALLHIIPDDDANIYVNGFFIQSVNAGWTSGTYTNRPITINLVQGTNVLAISIRNSGGGPAALLASLTSMDGRTVLARTDKS-WEVN 180
BLAST of jgi.p|Trimin1|161948 vs. uniprot
Match: A0A8J4CQT2_9CHLO (Uncharacterized protein n=1 Tax=Volvox reticuliferus TaxID=1737510 RepID=A0A8J4CQT2_9CHLO) HSP 1 Score: 72.4 bits (176), Expect = 6.840e-12 Identity = 56/155 (36.13%), Postives = 74/155 (47.74%), Query Frame = 1 Query: 40 VVDQGGFGIVPWGAASN-----FEDKTAKWIWTSPNARFSAAVGTYDFAAQYKIMSTTPVTA------TLHILVDNDADVFLNGSKVGSASLGFSAQDYARIP-----MTLVWGVNDIVLHCTNTGVGPAGVCASLIDDASKTPLLHTEGSRWVY 456 V+ G G+ PWG+++ F D AKWIW PNA + T A ST V+A L ++VD+ ADVF+NG+ V S G+ YA P +TL G N I + T+T VG AG+ AS+ T L T S W Y Sbjct: 193 AVELGPAGMGPWGSSNIGPGRLFNDTQAKWIWAEPNADKDTYIPTITTAT----FSTIIVSACYGTQVVLRLIVDDVADVFVNGALVVSMKWGWDNSAYAGQPGVPVTLTLARGTNTISVRVTST-VGGAGLLASISSKDDGTVLSRTS-SAWTY 341 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|161948 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_1473 ID=mRNA_1473|Name=jgi.p|Trimin1|161948|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=471bp|location=Sequence derived from alignment at Contig_18:1144415..1144885- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. ATGACCGAACGCTTCTCTGACCCGCCTACAGGTACGCCTGTGGTGGACCAback to top protein sequence of jgi.p|Trimin1|161948 >Trimin1|161948|e_gw1.18.37.1 ID=Trimin1|161948|e_gw1.18.37.1|Name=jgi.p|Trimin1|161948|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=157bp MTERFSDPPTGTPVVDQGGFGIVPWGAASNFEDKTAKWIWTSPNARFSAAback to top mRNA from alignment at Contig_18:1144415..1144885- Legend: exonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_1473 ID=mRNA_1473|Name=jgi.p|Trimin1|161948|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=471bp|location=Sequence derived from alignment at Contig_18:1144415..1144885- (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_18:1144415..1144885- >mRNA_1473 ID=mRNA_1473|Name=jgi.p|Trimin1|161948|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=471bp|location=Sequence derived from alignment at Contig_18:1144415..1144885- (Tribonema minus UTEX_B_3156 )back to top |