mRNA_1473 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|161948
Unique NamemRNA_1473
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
BLAST of jgi.p|Trimin1|161948 vs. uniprot
Match: A0A836CJ77_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJ77_9STRA)

HSP 1 Score: 327 bits (838), Expect = 1.470e-113
Identity = 156/156 (100.00%), Postives = 156/156 (100.00%), Query Frame = 1
Query:    1 MTERFSDPPTGTPVVDQGGFGIVPWGAASNFEDKTAKWIWTSPNARFSAAVGTYDFAAQYKIMSTTPVTATLHILVDNDADVFLNGSKVGSASLGFSAQDYARIPMTLVWGVNDIVLHCTNTGVGPAGVCASLIDDASKTPLLHTEGSRWVYNKVQ 468
            MTERFSDPPTGTPVVDQGGFGIVPWGAASNFEDKTAKWIWTSPNARFSAAVGTYDFAAQYKIMSTTPVTATLHILVDNDADVFLNGSKVGSASLGFSAQDYARIPMTLVWGVNDIVLHCTNTGVGPAGVCASLIDDASKTPLLHTEGSRWVYNKVQ
Sbjct:    1 MTERFSDPPTGTPVVDQGGFGIVPWGAASNFEDKTAKWIWTSPNARFSAAVGTYDFAAQYKIMSTTPVTATLHILVDNDADVFLNGSKVGSASLGFSAQDYARIPMTLVWGVNDIVLHCTNTGVGPAGVCASLIDDASKTPLLHTEGSRWVYNKVQ 156          
BLAST of jgi.p|Trimin1|161948 vs. uniprot
Match: A0A836CLV6_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CLV6_9STRA)

HSP 1 Score: 281 bits (720), Expect = 4.210e-95
Identity = 132/155 (85.16%), Postives = 142/155 (91.61%), Query Frame = 1
Query:    1 MTERFSDPPTGTPVVDQGGFGIVPWGAASNFEDKTAKWIWTSPNARFSAAVGTYDFAAQYKIMSTTPVTATLHILVDNDADVFLNGSKVGSASLGFSAQDYARIPMTLVWGVNDIVLHCTNTGVGPAGVCASLIDDASKTPLLHTEGSRWVYNKV 465
            + ERFS+ P GTPVVDQGGFG VPWG+AS FEDKTAKWIWTSPNARFSA VG+Y+FAAQ KIMS TPVTA LHILVDNDAD++LNG KVGSASLGFSA+DY+RIP+TLVWGVNDIVL CTNTGVGPAGVCASLIDD SKTPLL TEGSRWVYNKV
Sbjct:   33 VLERFSEQPVGTPVVDQGGFGTVPWGSASQFEDKTAKWIWTSPNARFSAPVGSYNFAAQLKIMSVTPVTAMLHILVDNDADIYLNGEKVGSASLGFSARDYSRIPLTLVWGVNDIVLRCTNTGVGPAGVCASLIDDVSKTPLLKTEGSRWVYNKV 187          
BLAST of jgi.p|Trimin1|161948 vs. uniprot
Match: A0A835Z862_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z862_9STRA)

HSP 1 Score: 161 bits (407), Expect = 4.070e-48
Identity = 72/139 (51.80%), Postives = 95/139 (68.35%), Query Frame = 1
Query:   43 VDQGGFGIVPWGAASNFEDKTAKWIWTSPNARFSAAVGTYDFAAQYKIMSTTPVTATLHILVDNDADVFLNGSKVGSASLGFSAQDYARIPMTLVWGVNDIVLHCTNTGVGPAGVCASLIDDASKTPLLHTEGSRWVYN 459
            V QGGFG+VPWG AS F D TA W+WT  NARFSA  GT DF+      S     A +H+LVDNDADVFLN +KVGS S+GFS ++YA+IP+ L WG + +   C N+G GPAG+  +++D AS   ++ ++ S WV+N
Sbjct:    2 VSQGGFGVVPWGGASQFIDPTATWLWTQTNARFSAPAGTVDFSTLITNSSQQDKQALIHMLVDNDADVFLNDAKVGSGSMGFSVREYAKIPIALPWGTSTLRFRCVNSGTGPAGLLVAVVDAASGVTIVKSDPSSWVFN 140          
BLAST of jgi.p|Trimin1|161948 vs. uniprot
Match: A0A835ZCJ5_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZCJ5_9STRA)

HSP 1 Score: 148 bits (374), Expect = 4.050e-43
Identity = 67/139 (48.20%), Postives = 94/139 (67.63%), Query Frame = 1
Query:   43 VDQGGFGIVPWGAASNFEDKTAKWIWTSPNARFSAAVGTYDFAAQYKIMSTTPVTATLHILVDNDADVFLNGSKVGSASLGFSAQDYARIPMTLVWGVNDIVLHCTNTGVGPAGVCASLIDDASKTPLLHTEGSRWVYN 459
            V+QGG+G +PWG A+ F + +A W+WT  NARFSA   T DF+      S     A +HILVDNDA ++LN  KVGSAS+GFS QDY ++P+++ WG + + +   NTG GPAG+  +++D AS T L+ T+ S WV+N
Sbjct:    2 VNQGGYGAIPWGGAAKFIEPSAMWLWTQNNARFSAPPATIDFSTLITNSSQDDQQAVIHILVDNDAVIYLNDIKVGSASMGFSNQDYNKLPVSIPWGTSTLRIRAMNTGQGPAGLIVAVVDAASGTTLVKTDPSSWVFN 140          
BLAST of jgi.p|Trimin1|161948 vs. uniprot
Match: A0A4V1IRM8_9FUNG (Uncharacterized protein n=1 Tax=Blyttiomyces helicus TaxID=388810 RepID=A0A4V1IRM8_9FUNG)

HSP 1 Score: 127 bits (319), Expect = 1.030e-31
Identity = 62/139 (44.60%), Postives = 89/139 (64.03%), Query Frame = 1
Query:   28 TGTPVVDQGGFGIVPWGAASNFEDKTAKWIWTSPNARFSAAVGTYDFAAQYKIMSTTPVTATLHILVDNDADVFLNGSKVGSASLGFSAQDYARIPMTLVWGVNDIVLHCTNTGVGPAGVCASLIDDASKTPLLHTEGS 444
            TGTPV + G FG++PWG+ S F D TA WIW +  A  +A  G+  F  QY   S   ++ATLHIL D+ A +F+NG+ +G+A+ G++   Y ++P+ L  G N I +  TN   GPAG+CASLI  +S + LLHT+ +
Sbjct:  335 TGTPVFNLGNFGMLPWGSTSKFADTTASWIWNTTTAAQNAPAGSVTFVNQYYNSSNNTISATLHILADDSATIFVNGTNIGTATAGWAITSYTQLPVNLTPGSNLISIVATNAS-GPAGLCASLIS-SSNSVLLHTDAT 471          
BLAST of jgi.p|Trimin1|161948 vs. uniprot
Match: A0A4P9WB35_9FUNG (Uncharacterized protein (Fragment) n=1 Tax=Blyttiomyces helicus TaxID=388810 RepID=A0A4P9WB35_9FUNG)

HSP 1 Score: 111 bits (277), Expect = 7.190e-26
Identity = 56/139 (40.29%), Postives = 83/139 (59.71%), Query Frame = 1
Query:   28 TGTPVVDQGGFGIVPWGAASNFEDKTAKWIWTSPNARFSAAVGTYDFAAQYKIMSTTPVTATLHILVDNDADVFLNGSKVGSASLGFSAQDYARIPMTLVWGVNDIVLHCTNTGVGPAGVCASLIDDASKTPLLHTEGS 444
            TGT V++ G FG+ PWG+ SNF D  + WIW +  A  +A  G+     +Y   S   ++ATLHIL D+ A +F+NG+ +G+A+ G++   Y  +P+ L  G N I +  TN   GPA +CA LI  +S + L HTE +
Sbjct:  305 TGTQVLNLGNFGMCPWGSTSNFADTISSWIWNTLMAAKNAPAGSVTCVNEYYNSSNNTISATLHILADDSATIFVNGTNIGTATAGWAKTSYTMLPVNLTPGANLISIVATNAS-GPARLCACLIS-SSYSVLFHTEAT 441          
BLAST of jgi.p|Trimin1|161948 vs. uniprot
Match: A0A7J7PL87_9CHLO (Uncharacterized protein n=1 Tax=Scenedesmus sp. NREL 46B-D3 TaxID=2650976 RepID=A0A7J7PL87_9CHLO)

HSP 1 Score: 108 bits (269), Expect = 5.170e-25
Identity = 64/159 (40.25%), Postives = 95/159 (59.75%), Query Frame = 1
Query:    1 MTERFSDPP-TGTPVVDQGGFGIVPWGAASNFEDKTAKWIWTSPNARFSAAVGT-YDFAAQYKIMSTTPVTATLHILVDNDADV-----FLNGSKVGSASLG-FSAQDYARIPMTLVWGVNDIVLHCTNTGVGPAGVCASLIDDASKTPLLHTEGSRWV 453
            +  R   PP TGT   + G +G+ PWG+A+ F    A+WIW S  A  SA VGT   F++QY   +  P+ ATLH+++D+   V      LNGS+    ++G +  +DY+++P+TL  G N + +  +N G GPAG  A+L+D AS + LLHT G+ WV
Sbjct:   78 IARRVRPPPLTGTSANELGKYGMAPWGSAAAFVAPDAQWIWNSSTAATSAPVGTGVKFSSQYFHDADAPIAATLHVVLDDRGAVKVNGQLLNGSQGHQVAMGGWETKDYSKMPVTLQPGNNTVDIFASNLG-GPAGALAALVDAASGSILLHTNGT-WV 234          
BLAST of jgi.p|Trimin1|161948 vs. uniprot
Match: A0A8J4CWM7_9CHLO (Uncharacterized protein n=1 Tax=Volvox reticuliferus TaxID=1737510 RepID=A0A8J4CWM7_9CHLO)

HSP 1 Score: 73.2 bits (178), Expect = 5.050e-13
Identity = 49/150 (32.67%), Postives = 75/150 (50.00%), Query Frame = 1
Query:   40 VVDQGGFGIVPWGAASN-----FEDKTAKWIWTSPNA-RFSAAVGTYDFAAQYKIMSTTPVTATLHILVDNDADVFLNGSKVGSASLGFSAQDYARIP-----MTLVWGVNDIVLHCTNTGVGPAGVCASLIDDASKTPLLHTEGSRWVY 456
             V+ G  G+ PWG+++      F D  AKWIW  PNA + ++A+ T  F+    + +       L ++VD+ ADV++NG+ V S   G++   Y   P     +TL  G N I +  TN+    AG+ AS+      T L  T  S W+Y
Sbjct:   37 AVELGPAGMAPWGSSNIGPMQLFTDTQAKWIWAEPNADKGTSAITTATFSITI-VSACQETQVVLRLIVDDLADVYVNGALVVSMKWGWNNNTYPGTPGQPVTLTLARGTNTISVRATNSFGEAAGLLASISSKDDGTVLTRTS-SAWMY 184          
BLAST of jgi.p|Trimin1|161948 vs. uniprot
Match: D8TKU9_VOLCA (Uncharacterized protein n=1 Tax=Volvox carteri f. nagariensis TaxID=3068 RepID=D8TKU9_VOLCA)

HSP 1 Score: 70.5 bits (171), Expect = 3.820e-12
Identity = 46/143 (32.17%), Postives = 69/143 (48.25%), Query Frame = 1
Query:   58 FGIVPWGAASNFEDKTAKWIWTSPNARFSAAVGTYD-------FAAQYKIMSTTPVTATLHILVDNDADVFLNGSKVGSASLGFSAQDYARIPMT--LVWGVNDIVLHCTNTGVGPAGVCASLIDDASKTPLLHTEGSRWVYN 459
            +G    G A  F D +AKWIW   N   S +  T         F     + +     A LHI+ D+DA++++NG  + S + G+++  Y   P+T  LV G N + +   N+G GPA + ASL     +T L  T+ S W  N
Sbjct:   39 YGTDNIGVAKPFFDLSAKWIWYHTNGAGSGSNRTSSGQSIAPLFIKTITVSTAGGTQALLHIIPDDDANIYVNGFFIQSVNAGWTSGTYTNRPITINLVQGTNVLAISIRNSGGGPAALLASLTSMDGRTVLARTDKS-WEVN 180          
BLAST of jgi.p|Trimin1|161948 vs. uniprot
Match: A0A8J4CQT2_9CHLO (Uncharacterized protein n=1 Tax=Volvox reticuliferus TaxID=1737510 RepID=A0A8J4CQT2_9CHLO)

HSP 1 Score: 72.4 bits (176), Expect = 6.840e-12
Identity = 56/155 (36.13%), Postives = 74/155 (47.74%), Query Frame = 1
Query:   40 VVDQGGFGIVPWGAASN-----FEDKTAKWIWTSPNARFSAAVGTYDFAAQYKIMSTTPVTA------TLHILVDNDADVFLNGSKVGSASLGFSAQDYARIP-----MTLVWGVNDIVLHCTNTGVGPAGVCASLIDDASKTPLLHTEGSRWVY 456
             V+ G  G+ PWG+++      F D  AKWIW  PNA     + T   A      ST  V+A       L ++VD+ ADVF+NG+ V S   G+    YA  P     +TL  G N I +  T+T VG AG+ AS+      T L  T  S W Y
Sbjct:  193 AVELGPAGMGPWGSSNIGPGRLFNDTQAKWIWAEPNADKDTYIPTITTAT----FSTIIVSACYGTQVVLRLIVDDVADVFVNGALVVSMKWGWDNSAYAGQPGVPVTLTLARGTNTISVRVTST-VGGAGLLASISSKDDGTVLSRTS-SAWTY 341          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|161948 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A836CJ77_9STRA1.470e-113100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A836CLV6_9STRA4.210e-9585.16Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835Z862_9STRA4.070e-4851.80Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
A0A835ZCJ5_9STRA4.050e-4348.20Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
A0A4V1IRM8_9FUNG1.030e-3144.60Uncharacterized protein n=1 Tax=Blyttiomyces helic... [more]
A0A4P9WB35_9FUNG7.190e-2640.29Uncharacterized protein (Fragment) n=1 Tax=Blyttio... [more]
A0A7J7PL87_9CHLO5.170e-2540.25Uncharacterized protein n=1 Tax=Scenedesmus sp. NR... [more]
A0A8J4CWM7_9CHLO5.050e-1332.67Uncharacterized protein n=1 Tax=Volvox reticulifer... [more]
D8TKU9_VOLCA3.820e-1232.17Uncharacterized protein n=1 Tax=Volvox carteri f. ... [more]
A0A8J4CQT2_9CHLO6.840e-1236.13Uncharacterized protein n=1 Tax=Volvox reticulifer... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_18contigContig_18:1144415..1144885 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|161948|e_gw1.18.37.1
BRITEko00000,ko01000
KEGG koko:K05989
EC3.2.1.40
DescriptionAlpha-L-rhamnosidase N-terminal domain
COG categoryG
Max annot lvl201174|Actinobacteria
EggNOG OGsCOG3250@1|root,COG3250@2|Bacteria,2I3FI@201174|Actinobacteria,2NH4H@228398|Streptacidiphilus
Evalue2.76e-07
Seed ortholog981369.JQMJ01000001_gene6849
Hectar predicted targeting categoryother localisation
TranscriptId162270
TrackFilteredModels1
ProteinId161948
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|161948gene_1473Tribonema minus UTEX_B_3156 geneContig_18 1144415..1144885 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_1473_1exon_1473_1Tribonema minus UTEX_B_3156 exonContig_18 1144415..1144885 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_1473CDS_1473Tribonema minus UTEX_B_3156 CDSContig_18 1144415..1144885 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|161948Trimin1|161948|e_gw1.18.37.1Tribonema minus UTEX_B_3156 polypeptideContig_18 1144415..1144885 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_1473 ID=mRNA_1473|Name=jgi.p|Trimin1|161948|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=471bp|location=Sequence derived from alignment at Contig_18:1144415..1144885- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGACCGAACGCTTCTCTGACCCGCCTACAGGTACGCCTGTGGTGGACCA
GGGCGGCTTTGGCATAGTTCCATGGGGCGCTGCCAGTAACTTTGAAGACA
AGACAGCCAAGTGGATATGGACATCGCCAAATGCCAGGTTCAGCGCAGCT
GTTGGGACATATGACTTTGCAGCCCAGTACAAGATCATGTCAACAACACC
AGTCACTGCAACACTTCATATCTTGGTCGACAATGACGCCGACGTGTTCT
TGAACGGATCAAAGGTGGGCAGCGCGTCGCTCGGGTTCTCAGCACAGGAC
TATGCGCGCATACCGATGACCCTTGTTTGGGGGGTCAATGACATTGTTCT
GCACTGCACCAACACAGGGGTGGGCCCAGCAGGTGTGTGTGCTTCGCTGA
TTGACGATGCATCAAAGACACCGCTGCTCCACACAGAAGGCTCGCGCTGG
GTGTACAACAAGGTTCAATGA
back to top

protein sequence of jgi.p|Trimin1|161948

>Trimin1|161948|e_gw1.18.37.1 ID=Trimin1|161948|e_gw1.18.37.1|Name=jgi.p|Trimin1|161948|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=157bp
MTERFSDPPTGTPVVDQGGFGIVPWGAASNFEDKTAKWIWTSPNARFSAA
VGTYDFAAQYKIMSTTPVTATLHILVDNDADVFLNGSKVGSASLGFSAQD
YARIPMTLVWGVNDIVLHCTNTGVGPAGVCASLIDDASKTPLLHTEGSRW
VYNKVQ*
back to top

mRNA from alignment at Contig_18:1144415..1144885-

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_1473 ID=mRNA_1473|Name=jgi.p|Trimin1|161948|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=471bp|location=Sequence derived from alignment at Contig_18:1144415..1144885- (Tribonema minus UTEX_B_3156 )
ATGACCGAACGCTTCTCTGACCCGCCTACAGGTACGCCTGTGGTGGACCA GGGCGGCTTTGGCATAGTTCCATGGGGCGCTGCCAGTAACTTTGAAGACA AGACAGCCAAGTGGATATGGACATCGCCAAATGCCAGGTTCAGCGCAGCT GTTGGGACATATGACTTTGCAGCCCAGTACAAGATCATGTCAACAACACC AGTCACTGCAACACTTCATATCTTGGTCGACAATGACGCCGACGTGTTCT TGAACGGATCAAAGGTGGGCAGCGCGTCGCTCGGGTTCTCAGCACAGGAC TATGCGCGCATACCGATGACCCTTGTTTGGGGGGTCAATGACATTGTTCT GCACTGCACCAACACAGGGGTGGGCCCAGCAGGTGTGTGTGCTTCGCTGA TTGACGATGCATCAAAGACACCGCTGCTCCACACAGAAGGCTCGCGCTGG GTGTACAACAAGGTTCAATGA
back to top

Coding sequence (CDS) from alignment at Contig_18:1144415..1144885-

>mRNA_1473 ID=mRNA_1473|Name=jgi.p|Trimin1|161948|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=471bp|location=Sequence derived from alignment at Contig_18:1144415..1144885- (Tribonema minus UTEX_B_3156 )
ATGACCGAACGCTTCTCTGACCCGCCTACAGGTACGCCTGTGGTGGACCA
GGGCGGCTTTGGCATAGTTCCATGGGGCGCTGCCAGTAACTTTGAAGACA
AGACAGCCAAGTGGATATGGACATCGCCAAATGCCAGGTTCAGCGCAGCT
GTTGGGACATATGACTTTGCAGCCCAGTACAAGATCATGTCAACAACACC
AGTCACTGCAACACTTCATATCTTGGTCGACAATGACGCCGACGTGTTCT
TGAACGGATCAAAGGTGGGCAGCGCGTCGCTCGGGTTCTCAGCACAGGAC
TATGCGCGCATACCGATGACCCTTGTTTGGGGGGTCAATGACATTGTTCT
GCACTGCACCAACACAGGGGTGGGCCCAGCAGGTGTGTGTGCTTCGCTGA
TTGACGATGCATCAAAGACACCGCTGCTCCACACAGAAGGCTCGCGCTGG
GTGTACAACAAGGTTCAATGA
back to top