mRNA_14722 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|129921
Unique NamemRNA_14722
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|129921 vs. uniprot
Match: A0A836CPJ3_9STRA (Sulfatase domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CPJ3_9STRA)

HSP 1 Score: 135 bits (339), Expect = 2.240e-40
Identity = 64/64 (100.00%), Postives = 64/64 (100.00%), Query Frame = 1 
Query:    1 IGRITQTLQDKAMWQDTLIVVLSDNGGPISLTGGASNFPLRGWKYSNFEGGVRTNALVSGGFVP 192
            IGRITQTLQDKAMWQDTLIVVLSDNGGPISLTGGASNFPLRGWKYSNFEGGVRTNALVSGGFVP
Sbjct:    1 IGRITQTLQDKAMWQDTLIVVLSDNGGPISLTGGASNFPLRGWKYSNFEGGVRTNALVSGGFVP 64
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BLAST of jgi.p|Trimin1|129921 vs. uniprot
Match: A0A835ZDE5_9STRA (Alkaline-phosphatase-like protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZDE5_9STRA)

HSP 1 Score: 114 bits (285), Expect = 3.170e-28
Identity = 53/64 (82.81%), Postives = 60/64 (93.75%), Query Frame = 1 
Query:    1 IGRITQTLQDKAMWQDTLIVVLSDNGGPISLTGGASNFPLRGWKYSNFEGGVRTNALVSGGFVP 192
            IG I QTL++K +WQ+TL+VV+SDNGGPI+LTGGASNFPLRG KYSNFEGGVRTNALVSGGFVP
Sbjct:  279 IGTIIQTLKNKNLWQNTLVVVMSDNGGPIALTGGASNFPLRGGKYSNFEGGVRTNALVSGGFVP 342
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BLAST of jgi.p|Trimin1|129921 vs. uniprot
Match: A0A836CMP8_9STRA (Arylsulfatase B-like protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CMP8_9STRA)

HSP 1 Score: 108 bits (269), Expect = 5.520e-26
Identity = 49/64 (76.56%), Postives = 56/64 (87.50%), Query Frame = 1 
Query:    1 IGRITQTLQDKAMWQDTLIVVLSDNGGPISLTGGASNFPLRGWKYSNFEGGVRTNALVSGGFVP 192
            IGRI QT++DK +W + LI+V+SDNGGPIS+ GGASNFPLRG KY NFEGGVRTNA VSGGFVP
Sbjct:  284 IGRIIQTVKDKGLWDNALILVMSDNGGPISVEGGASNFPLRGGKYGNFEGGVRTNAFVSGGFVP 347
[Close]
BLAST of jgi.p|Trimin1|129921 vs. uniprot
Match: A0A835YSD4_9STRA (Alkaline-phosphatase-like protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YSD4_9STRA)

HSP 1 Score: 99.0 bits (245), Expect = 1.140e-22
Identity = 44/64 (68.75%), Postives = 51/64 (79.69%), Query Frame = 1 
Query:    1 IGRITQTLQDKAMWQDTLIVVLSDNGGPISLTGGASNFPLRGWKYSNFEGGVRTNALVSGGFVP 192
            IG I Q L+ K MW  +L+VV+SDNGGPIS  GGASN+PLRG KY NFEGG R NALVSGG++P
Sbjct:  310 IGTIIQNLKSKKMWSSSLVVVMSDNGGPISFAGGASNYPLRGGKYGNFEGGTRVNALVSGGYLP 373
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BLAST of jgi.p|Trimin1|129921 vs. uniprot
Match: A0A835Z5L6_9STRA (Arylsulfatase B-like protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z5L6_9STRA)

HSP 1 Score: 98.6 bits (244), Expect = 1.420e-22
Identity = 44/64 (68.75%), Postives = 53/64 (82.81%), Query Frame = 1 
Query:    1 IGRITQTLQDKAMWQDTLIVVLSDNGGPISLTGGASNFPLRGWKYSNFEGGVRTNALVSGGFVP 192
            IGRI QTL+D  +W + L+VV++DNGGPIS +GGASN PLRG KYSN EGGVR NA V+GGF+P
Sbjct:  300 IGRIAQTLRDTGLWDNALVVVMADNGGPISASGGASNHPLRGGKYSNLEGGVRGNAFVAGGFLP 363
[Close]
BLAST of jgi.p|Trimin1|129921 vs. uniprot
Match: A0A835YMD4_9STRA (Arylsulfatase B-like protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YMD4_9STRA)

HSP 1 Score: 97.4 bits (241), Expect = 3.560e-22
Identity = 43/64 (67.19%), Postives = 51/64 (79.69%), Query Frame = 1 
Query:    1 IGRITQTLQDKAMWQDTLIVVLSDNGGPISLTGGASNFPLRGWKYSNFEGGVRTNALVSGGFVP 192
            IG I Q L+ K +W  +L+VV+SDNGGPIS  GGASN+PLRG KY NFEGG R NALVSGG++P
Sbjct:  293 IGMIIQNLKSKKIWSSSLVVVMSDNGGPISFAGGASNYPLRGGKYGNFEGGARVNALVSGGYLP 356
[Close]
BLAST of jgi.p|Trimin1|129921 vs. uniprot
Match: A0A836CLE7_9STRA (Alkaline-phosphatase-like protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CLE7_9STRA)

HSP 1 Score: 95.1 bits (235), Expect = 3.980e-22
Identity = 44/64 (68.75%), Postives = 49/64 (76.56%), Query Frame = 1 
Query:    1 IGRITQTLQDKAMWQDTLIVVLSDNGGPISLTGGASNFPLRGWKYSNFEGGVRTNALVSGGFVP 192
            IG I Q L+ K MW   LIVV+SDNGGPIS  GGASN+PLR  KYSNFEGG R NA VSGG++P
Sbjct:  164 IGTIIQNLKSKKMWGSALIVVMSDNGGPISSAGGASNYPLRSGKYSNFEGGTRANAFVSGGYLP 227
[Close]
BLAST of jgi.p|Trimin1|129921 vs. uniprot
Match: A0A835YXV1_9STRA (Arylsulfatase B-like protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YXV1_9STRA)

HSP 1 Score: 95.9 bits (237), Expect = 1.280e-21
Identity = 41/64 (64.06%), Postives = 52/64 (81.25%), Query Frame = 1 
Query:    1 IGRITQTLQDKAMWQDTLIVVLSDNGGPISLTGGASNFPLRGWKYSNFEGGVRTNALVSGGFVP 192
            +GR+ QTL+D  MW +TLIVV+SDNGGP+S  GGA+N+PLRG KY   EGG+R NA V+GGF+P
Sbjct:  291 VGRLVQTLKDTGMWDNTLIVVVSDNGGPMSYLGGANNYPLRGGKYGTLEGGIRGNAFVAGGFLP 354
[Close]
BLAST of jgi.p|Trimin1|129921 vs. uniprot
Match: A0A813E435_POLGL (Hypothetical protein n=1 Tax=Polarella glacialis TaxID=89957 RepID=A0A813E435_POLGL)

HSP 1 Score: 95.5 bits (236), Expect = 1.880e-21
Identity = 40/64 (62.50%), Postives = 54/64 (84.38%), Query Frame = 1 
Query:    1 IGRITQTLQDKAMWQDTLIVVLSDNGGPISLTGGASNFPLRGWKYSNFEGGVRTNALVSGGFVP 192
            IG + Q L+ K+MW+DTL+V +SDNGGPI + G A+N+PL+G KYS++EGGVRTNA +SGGF+P
Sbjct:  311 IGEVVQALKAKSMWEDTLVVFMSDNGGPIYVPGSANNYPLKGGKYSDWEGGVRTNAFMSGGFIP 374
[Close]
BLAST of jgi.p|Trimin1|129921 vs. uniprot
Match: A0A813DZ90_POLGL (Hypothetical protein n=1 Tax=Polarella glacialis TaxID=89957 RepID=A0A813DZ90_POLGL)

HSP 1 Score: 90.5 bits (223), Expect = 1.920e-20
Identity = 38/64 (59.38%), Postives = 52/64 (81.25%), Query Frame = 1 
Query:    1 IGRITQTLQDKAMWQDTLIVVLSDNGGPISLTGGASNFPLRGWKYSNFEGGVRTNALVSGGFVP 192
            IG + + L+  +MW+DTL+V  SDNGGPI + G A+N+PL+G KYS++EGGVRTNA +SGGF+P
Sbjct:  160 IGEVVKALKATSMWEDTLVVFTSDNGGPIYVPGSANNYPLKGGKYSDWEGGVRTNAFMSGGFIP 223
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|129921 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A836CPJ3_9STRA2.240e-40100.00Sulfatase domain-containing protein (Fragment) n=1... [more]
A0A835ZDE5_9STRA3.170e-2882.81Alkaline-phosphatase-like protein n=1 Tax=Tribonem... [more]
A0A836CMP8_9STRA5.520e-2676.56Arylsulfatase B-like protein n=1 Tax=Tribonema min... [more]
A0A835YSD4_9STRA1.140e-2268.75Alkaline-phosphatase-like protein n=1 Tax=Tribonem... [more]
A0A835Z5L6_9STRA1.420e-2268.75Arylsulfatase B-like protein n=1 Tax=Tribonema min... [more]
A0A835YMD4_9STRA3.560e-2267.19Arylsulfatase B-like protein n=1 Tax=Tribonema min... [more]
A0A836CLE7_9STRA3.980e-2268.75Alkaline-phosphatase-like protein n=1 Tax=Tribonem... [more]
A0A835YXV1_9STRA1.280e-2164.06Arylsulfatase B-like protein n=1 Tax=Tribonema min... [more]
A0A813E435_POLGL1.880e-2162.50Hypothetical protein n=1 Tax=Polarella glacialis T... [more]
A0A813DZ90_POLGL1.920e-2059.38Hypothetical protein n=1 Tax=Polarella glacialis T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_120contigContig_120:380188..381554 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|129921|gw1.120.6.1
Descriptionsulfuric ester hydrolase activity
COG categoryP
Max annot lvl2759|Eukaryota
EggNOG OGsCOG3119@1|root,KOG3867@2759|Eukaryota
Evalue1.23e-17
Seed ortholog2903.EOD08892
Hectar predicted targeting categoryother localisation
TranscriptId130243
TrackFilteredModels1
ProteinId129921
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|129921gene_14722Tribonema minus UTEX_B_3156 geneContig_120 380188..381554 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|129921Trimin1|129921|gw1.120.6.1Tribonema minus UTEX_B_3156 polypeptideContig_120 380188..381554 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_14722_2exon_14722_2Tribonema minus UTEX_B_3156 exonContig_120 380188..380232 -
exon_14722_1exon_14722_1Tribonema minus UTEX_B_3156 exonContig_120 381408..381554 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_14722CDS_14722Tribonema minus UTEX_B_3156 CDSContig_120 381408..381554 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_14722 ID=mRNA_14722|Name=jgi.p|Trimin1|129921|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=192bp|location=Sequence derived from alignment at Contig_120:380188..381554- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATTGGGAGGATCACTCAGACACTGCAAGACAAGGCGATGTGGCAAGATAC
ACTCATTGTTGTGCTGAGTGACAATGGTGGTCCAATCTCCTTGACCGGAG
GAGCCAGCAATTTTCCGCTTCGCGGGTGGAAATATTCTAACTTTGAGGGC
GGCGTGCGCACGAACGCACTGGTGTCTGGAGGCTTTGTCCCA
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protein sequence of jgi.p|Trimin1|129921

>Trimin1|129921|gw1.120.6.1 ID=Trimin1|129921|gw1.120.6.1|Name=jgi.p|Trimin1|129921|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=64bp
IGRITQTLQDKAMWQDTLIVVLSDNGGPISLTGGASNFPLRGWKYSNFEG
GVRTNALVSGGFVP
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mRNA from alignment at Contig_120:380188..381554-

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_14722 ID=mRNA_14722|Name=jgi.p|Trimin1|129921|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1367bp|location=Sequence derived from alignment at Contig_120:380188..381554- (Tribonema minus UTEX_B_3156 )
ATTGGGAGGATCACTCAGACACTGCAAGACAAGGCGATGTGGCAAGATAC
ACTCATTGTTGTGCTGAGTGACAATGGTGGTCCAATCTCCTTGACCGGAG
GAGCCAGCAATTTTCCGCTTCGCGGGTGGAAATATTCTAACTTTGAGGTA
AGCACTTGCGTAAACGTTTTATGAATTCTCGCTCGGGGCGCGAAAAAGCC
CAGATGAATGGCATCTAACTTGAAGCTTGCTGTACGGAATCCACATGTCG
TGTGACAGTCTGAAAGTGTCTCAACAACAACCACTCAAACGCCGCCGCCG
CCAAATGCCAGTGGCATCTCGGGATCCTCCCCTATGTCCTCCTCCATGTG
CCCCCCCCCCCCCCTGGATTCTGCCATGTGTGTCATGACACGGCCAGAGT
ACGCCATGTGGAGCGCTGCCGACAGTGCCGAGCGTAAGCGCGCCAGGGCG
ATGCCCATCGTGTATACATGACCGGGCCCAACGCCCCCACTTGAGAGCAT
GTGGCGTCTTAAGCTGCCTGTGTGTGCGGCCTGTATGGTAATGCTTCATG
GCTAACGTGGGGCACATGCAACAGACACACGCCGTTGCTGCTGATGTCCG
GCAGGACTGTCTGGCAGGTCATACACTATTGTCATCAACATAGGCCACTG
GACAAGGCATGCACTGACATCTTGCACTGTGTTGAAATGGGTCAACACCA
CCGGAATCTTTTGTGCCTATGTGAAGGTTTCATCAAATTGAATCCATTCA
TTGCAAGGCGAAAATGTGGCAACAGCATTCGCAGCAGTCAGCGACAGCCG
TGCCCGTATTAGTCAACGGTCTCCTTAAGCTGAATGGCAGCAGCGCTCAG
CTGCATTTGTGCTCAATGACCGCATTTGCAGAAGCCGACCAACATGCCGC
ATTTTCAAAGGAAGGCTTTTTGTCTGCTTTTGCACAACCACATTTATCGG
CGCCATGGCTGGTGGTACCTGGAGAGAGTAGCTGCAAGCGCTGCTACCCT
CTATACGCAACACTTGCAGGCAAGGCTACATGTAACTGGAGTCACTGGAG
CTGCCCTCGCTCGTGATGAGTTCCACACTGTGAGTGCTGCCATCGGATAC
TACTCAGTCGTCACATTGCATTGGCGATCTCAGCAGCCTGAGGACCCCAA
ACTGTGAGCTGGGACACTGATCACTTGCCACATCACGCATACAGCTCCCT
GCCCATATGACCGCAACCCTGCAGCAGTGCGGGCACCTTGCTACGAATCT
GCTCACTACCGCACCGCAGTTCACGCCCAGTCCATCATGATGATCATGTC
TGCAATGTGCAATGGCGTCCAGGGCGGCGTGCGCACGAACGCACTGGTGT
CTGGAGGCTTTGTCCCA
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Coding sequence (CDS) from alignment at Contig_120:380188..381554-

>mRNA_14722 ID=mRNA_14722|Name=jgi.p|Trimin1|129921|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=192bp|location=Sequence derived from alignment at Contig_120:380188..381554- (Tribonema minus UTEX_B_3156 )
ATTGGGAGGATCACTCAGACACTGCAAGACAAGGCGATGTGGCAAGATAC
ACTCATTGTTGTGCTGAGTGACAATGGTGGTCCAATCTCCTTGACCGGAG
GAGCCAGCAATTTTCCGCTTCGCGGGTGGAAATATTCTAACTTTGAGGGC
GGCGTGCGCACGAACGCACTGGTGTCTGGAGGCTTTGTCCCA
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