mRNA_14715 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|352491
Unique NamemRNA_14715
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|352491 vs. uniprot
Match: A0A835ZGL6_9STRA (Heat shock protein 40 like protein/ DnaJ domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZGL6_9STRA)

HSP 1 Score: 353 bits (907), Expect = 4.190e-122
Identity = 186/186 (100.00%), Postives = 186/186 (100.00%), Query Frame = 2 
Query:  110 MAAAAAAPHQGSTGSGSRVTITPSYYSILGVRRCATTDEIDRAFKRLALTRHPDKGGDAAAFQQLRRAHDVLRDPGQRAIYDECGPSMRPSPGNTIGKSTVGRLIPLAVSAASGFLGQLGWVWGAYDIFGFAGATAAAAGAGVFAGGGHSRRDGALHASLAGILLGNGLAAAAILSARGAMWLLRG 667
            MAAAAAAPHQGSTGSGSRVTITPSYYSILGVRRCATTDEIDRAFKRLALTRHPDKGGDAAAFQQLRRAHDVLRDPGQRAIYDECGPSMRPSPGNTIGKSTVGRLIPLAVSAASGFLGQLGWVWGAYDIFGFAGATAAAAGAGVFAGGGHSRRDGALHASLAGILLGNGLAAAAILSARGAMWLLRG
Sbjct:    1 MAAAAAAPHQGSTGSGSRVTITPSYYSILGVRRCATTDEIDRAFKRLALTRHPDKGGDAAAFQQLRRAHDVLRDPGQRAIYDECGPSMRPSPGNTIGKSTVGRLIPLAVSAASGFLGQLGWVWGAYDIFGFAGATAAAAGAGVFAGGGHSRRDGALHASLAGILLGNGLAAAAILSARGAMWLLRG 186
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BLAST of jgi.p|Trimin1|352491 vs. uniprot
Match: A0A6H5K3C3_9PHAE (HSP40 protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K3C3_9PHAE)

HSP 1 Score: 129 bits (323), Expect = 1.150e-33
Identity = 79/167 (47.31%), Postives = 107/167 (64.07%), Query Frame = 2 
Query:  179 SYYSILGVRRCATTDEIDRAFKRLALTRHPDKGGDAAAFQQLRRAHDVLRDPGQRAIYDECGPSMRPSPGNTIGKSTVGRLIPLAVSAASGFLGQLGWVWGAYDI-FGFAGATAAAAGAGVFAG---GGHSRRDGALHASLAGILLGNGLAAAAILSARGAMWLLRG 667
            +YYSILGV   ATT+E+ +A++R++L+ HPDKGGD AAF++L +AHDVLRDP  R  YD+ G ++ PSPG+ IG  TVGRL+PL++SA  G + Q  +V GA +  F   G   AA G+ + A    GG   R  AL A + G++LGN +       ARG   LL G
Sbjct:    9 TYYSILGVGGTATTEEVSKAYRRVSLSVHPDKGGDPAAFRRLTKAHDVLRDPALRERYDKYGATLEPSPGDLIGSGTVGRLVPLSLSATGGAISQFLFVVGAVNASFWGVGCAVAAGGSWLKARRLEGGAGERASALPAVVGGLVLGNAVGFTVGFGARGTARLLFG 175
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BLAST of jgi.p|Trimin1|352491 vs. uniprot
Match: L8HKK9_ACACA (DnaJ domain containing protein n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8HKK9_ACACA)

HSP 1 Score: 80.5 bits (197), Expect = 7.440e-15
Identity = 38/92 (41.30%), Postives = 60/92 (65.22%), Query Frame = 2 
Query:  182 YYSILGVRRCATTDEIDRAFKRLALTRHPDKGGDAAAFQQLRRAHDVLRDPGQRAIYDECGPSMRPSPGNTIGKSTVGRLIPLAVSAASGFL 457
            YY++LGV R  T+DE+ +A++R++L  HPDKGG    +  +  A+ VL DP  R++Y+  G +++PS GN++   T   ++PL V  A GFL
Sbjct:    4 YYALLGVSRTTTSDELTKAYRRISLKAHPDKGGSEEKWNAIHTAYTVLNDPQTRSLYERYGRTLQPSVGNSLEIGTE-LILPLGVGCAFGFL 94
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BLAST of jgi.p|Trimin1|352491 vs. uniprot
Match: A0A7S1U7U4_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1U7U4_9STRA)

HSP 1 Score: 78.6 bits (192), Expect = 6.430e-14
Identity = 36/72 (50.00%), Postives = 49/72 (68.06%), Query Frame = 2 
Query:  149 GSGSRVTITPSYYSILGVRRCATTDEIDRAFKRLALTRHPDKGGDAAAFQQLRRAHDVLRDPGQRAIYDECG 364
            G+G+R      YY  LGV R AT + I RA++RLA+  HPDKGGD   F+++  A++VL DPG+R IYD+ G
Sbjct:   33 GAGARARADNEYYDALGVTRDATPEVIKRAYRRLAMKHHPDKGGDPEKFKEIGEAYEVLSDPGKRRIYDQVG 104
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BLAST of jgi.p|Trimin1|352491 vs. uniprot
Match: A0A7S1XTA5_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XTA5_9STRA)

HSP 1 Score: 78.6 bits (192), Expect = 3.520e-13
Identity = 36/72 (50.00%), Postives = 49/72 (68.06%), Query Frame = 2 
Query:  149 GSGSRVTITPSYYSILGVRRCATTDEIDRAFKRLALTRHPDKGGDAAAFQQLRRAHDVLRDPGQRAIYDECG 364
            G+G+R      YY  LGV R AT + I RA++RLA+  HPDKGGD   F+++  A++VL DPG+R IYD+ G
Sbjct:   33 GAGARARADNEYYDALGVTRDATPEVIKRAYRRLAMKHHPDKGGDPEKFKEIGEAYEVLSDPGKRRIYDQVG 104
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BLAST of jgi.p|Trimin1|352491 vs. uniprot
Match: A0A0G4EW74_VITBC (J domain-containing protein n=2 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A0G4EW74_VITBC)

HSP 1 Score: 74.7 bits (182), Expect = 5.150e-13
Identity = 38/63 (60.32%), Postives = 42/63 (66.67%), Query Frame = 2 
Query:  185 YSILGVRRCATTDEIDRAFKRLALTRHPDKGGDAAAFQQLRRAHDVLRDPGQRAIYDE--CGP 367
            Y+ LGV   AT  EI  AF+R ALT HPDKGGD  AFQ +  AH+VL DP QRA YD   CGP
Sbjct:   16 YARLGVPPTATHHEIKTAFRRHALTSHPDKGGDKEAFQAIHEAHEVLTDPSQRAAYDNRRCGP 78
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BLAST of jgi.p|Trimin1|352491 vs. uniprot
Match: UPI0013EA757D (DnaJ domain-containing protein n=2 Tax=unclassified Adlercreutzia TaxID=2636013 RepID=UPI0013EA757D)

HSP 1 Score: 77.0 bits (188), Expect = 6.860e-13
Identity = 34/64 (53.12%), Postives = 46/64 (71.88%), Query Frame = 2 
Query:  173 TPSYYSILGVRRCATTDEIDRAFKRLALTRHPDKGGDAAAFQQLRRAHDVLRDPGQRAIYDECG 364
            TP YY  LGV R A++DEI +AF++LA T HPD GGD A F+++  A++VL D  +R IYD+ G
Sbjct:    4 TPDYYKTLGVPRTASSDEIKKAFRKLARTHHPDAGGDEAKFKEINEAYEVLSDEKKRKIYDQYG 67
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BLAST of jgi.p|Trimin1|352491 vs. uniprot
Match: A0A0D2MUK0_9CHLO (Putative DnaJ proteinJ1 n=1 Tax=Monoraphidium neglectum TaxID=145388 RepID=A0A0D2MUK0_9CHLO)

HSP 1 Score: 77.8 bits (190), Expect = 7.190e-13
Identity = 35/61 (57.38%), Postives = 43/61 (70.49%), Query Frame = 2 
Query:  182 YYSILGVRRCATTDEIDRAFKRLALTRHPDKGGDAAAFQQLRRAHDVLRDPGQRAIYDECG 364
            YY ILGV   AT DEI +A ++LAL  HPDKGGD   F+++  AHDVL+DP +R IYD  G
Sbjct:   12 YYKILGVSPTATPDEIKKAHRKLALKHHPDKGGDPDTFKEINEAHDVLKDPKKREIYDRYG 72
[Close]
BLAST of jgi.p|Trimin1|352491 vs. uniprot
Match: A0A7V5CJF2_9BACT (J domain-containing protein n=1 Tax=Candidatus Berkelbacteria bacterium TaxID=2053521 RepID=A0A7V5CJF2_9BACT)

HSP 1 Score: 75.1 bits (183), Expect = 9.560e-13
Identity = 34/61 (55.74%), Postives = 45/61 (73.77%), Query Frame = 2 
Query:  182 YYSILGVRRCATTDEIDRAFKRLALTRHPDKGGDAAAFQQLRRAHDVLRDPGQRAIYDECG 364
            YY ILGV R A+TDEI +A++RLAL  HPD+GGD   F+++  A+ VL DP +RA YD+ G
Sbjct:    4 YYEILGVPRSASTDEIKKAYRRLALKYHPDRGGDHDKFKEINEAYQVLSDPQKRAQYDQFG 64
[Close]
BLAST of jgi.p|Trimin1|352491 vs. uniprot
Match: C7MLJ4_CRYCD (DnaJ-class molecular chaperone with C-terminal Zn finger domain protein n=1 Tax=Cryptobacterium curtum (strain ATCC 700683 / DSM 15641 / CCUG 43107 / 12-3) TaxID=469378 RepID=C7MLJ4_CRYCD)

HSP 1 Score: 75.9 bits (185), Expect = 1.860e-12
Identity = 34/64 (53.12%), Postives = 45/64 (70.31%), Query Frame = 2 
Query:  173 TPSYYSILGVRRCATTDEIDRAFKRLALTRHPDKGGDAAAFQQLRRAHDVLRDPGQRAIYDECG 364
            TP YY  LGV R AT+DEI +AF++LA   HPD GGD   F++L  A++VL D  +RA+YD+ G
Sbjct:    5 TPDYYKTLGVPRSATSDEIKKAFRKLARKLHPDAGGDETKFKELNEAYEVLSDEKKRALYDQYG 68
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|352491 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835ZGL6_9STRA4.190e-122100.00Heat shock protein 40 like protein/ DnaJ domain-co... [more]
A0A6H5K3C3_9PHAE1.150e-3347.31HSP40 protein n=2 Tax=Ectocarpus TaxID=2879 RepID=... [more]
L8HKK9_ACACA7.440e-1541.30DnaJ domain containing protein n=1 Tax=Acanthamoeb... [more]
A0A7S1U7U4_9STRA6.430e-1450.00Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
A0A7S1XTA5_9STRA3.520e-1350.00Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
A0A0G4EW74_VITBC5.150e-1360.32J domain-containing protein n=2 Tax=Vitrella brass... [more]
UPI0013EA757D6.860e-1353.13DnaJ domain-containing protein n=2 Tax=unclassifie... [more]
A0A0D2MUK0_9CHLO7.190e-1357.38Putative DnaJ proteinJ1 n=1 Tax=Monoraphidium negl... [more]
A0A7V5CJF2_9BACT9.560e-1355.74J domain-containing protein n=1 Tax=Candidatus Ber... [more]
C7MLJ4_CRYCD1.860e-1253.13DnaJ-class molecular chaperone with C-terminal Zn ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_120contigContig_120:292372..293106 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|352491|estExt_Genemark1.C_Ctg_1200036
BRITEko00000,ko03012
KEGG koko:K17867
Descriptionprotein folding
COG categoryO
Max annot lvl2759|Eukaryota
EggNOG OGsCOG0484@1|root,KOG0713@2759|Eukaryota
Evalue4.46e-35
Seed ortholog2880.D8LFD3
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionHeat shock protein 40 like protein/ DnaJ domain containing protein
Ec32 orthologEc-07_005860.1
TranscriptId352813
TrackFilteredModels1
ProteinId352491
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|352491gene_14715Tribonema minus UTEX_B_3156 geneContig_120 292372..293106 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_14715_1exon_14715_1Tribonema minus UTEX_B_3156 exonContig_120 292372..293106 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR3_14715UTR3_14715Tribonema minus UTEX_B_3156 three_prime_UTRContig_120 292372..292436 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_14715CDS_14715Tribonema minus UTEX_B_3156 CDSContig_120 292437..292997 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR5_14715UTR5_14715Tribonema minus UTEX_B_3156 five_prime_UTRContig_120 292998..293106 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|352491Trimin1|352491|estExt_Genemark1.C_Ctg_1200036Tribonema minus UTEX_B_3156 polypeptideContig_120 292437..292997 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_14715 ID=mRNA_14715|Name=jgi.p|Trimin1|352491|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=735bp|location=Sequence derived from alignment at Contig_120:292372..293106- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
GGTGCTTCAATCAGAGAGCATGGGGTCAAACAGCCTTAGATCTCATCTGC
AAGTCTGAGAGCTCTGAGGCCAGAGTCTCAGCTGCCCCAGTGCTTTGAGC
AGCACGAACATGGCTGCTGCTGCAGCGGCGCCTCATCAGGGATCGACTGG
CAGTGGCAGTAGAGTGACAATCACACCCTCCTACTACAGCATACTGGGCG
TGCGGCGATGCGCAACAACAGACGAAATTGACAGGGCCTTCAAGCGCCTG
GCACTGACCCGGCACCCTGACAAAGGGGGTGATGCAGCAGCCTTTCAGCA
GCTGCGCCGAGCCCACGACGTGCTGCGCGATCCCGGGCAGCGAGCGATAT
ACGACGAGTGCGGTCCCAGCATGAGACCGTCCCCCGGCAACACCATCGGC
AAGAGCACCGTGGGACGGTTGATACCCCTGGCCGTGAGCGCGGCAAGCGG
TTTTCTGGGACAGTTGGGCTGGGTTTGGGGAGCCTATGACATTTTCGGTT
TCGCCGGTGCAACTGCCGCGGCGGCGGGCGCAGGCGTCTTTGCGGGCGGC
GGCCACTCGCGACGTGACGGTGCGCTGCACGCGTCGCTGGCAGGGATACT
CTTGGGTAACGGCCTGGCGGCGGCGGCGATACTGTCGGCGCGCGGCGCGA
TGTGGCTCTTACGAGGGTAAAAGACGTTAATCACATGTTCATATAGCAGC
ACACAATGAAGTACATGCTGCGCTCTCACCGGTGC
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protein sequence of jgi.p|Trimin1|352491

>Trimin1|352491|estExt_Genemark1.C_Ctg_1200036 ID=Trimin1|352491|estExt_Genemark1.C_Ctg_1200036|Name=jgi.p|Trimin1|352491|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=187bp
MAAAAAAPHQGSTGSGSRVTITPSYYSILGVRRCATTDEIDRAFKRLALT
RHPDKGGDAAAFQQLRRAHDVLRDPGQRAIYDECGPSMRPSPGNTIGKST
VGRLIPLAVSAASGFLGQLGWVWGAYDIFGFAGATAAAAGAGVFAGGGHS
RRDGALHASLAGILLGNGLAAAAILSARGAMWLLRG*
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mRNA from alignment at Contig_120:292372..293106-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_14715 ID=mRNA_14715|Name=jgi.p|Trimin1|352491|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=735bp|location=Sequence derived from alignment at Contig_120:292372..293106- (Tribonema minus UTEX_B_3156 )
GGTGCTTCAATCAGAGAGCATGGGGTCAAACAGCCTTAGATCTCATCTGC
AAGTCTGAGAGCTCTGAGGCCAGAGTCTCAGCTGCCCCAGTGCTTTGAGC
AGCACGAACATGGCTGCTGCTGCAGCGGCGCCTCATCAGGGATCGACTGG
CAGTGGCAGTAGAGTGACAATCACACCCTCCTACTACAGCATACTGGGCG
TGCGGCGATGCGCAACAACAGACGAAATTGACAGGGCCTTCAAGCGCCTG
GCACTGACCCGGCACCCTGACAAAGGGGGTGATGCAGCAGCCTTTCAGCA
GCTGCGCCGAGCCCACGACGTGCTGCGCGATCCCGGGCAGCGAGCGATAT
ACGACGAGTGCGGTCCCAGCATGAGACCGTCCCCCGGCAACACCATCGGC
AAGAGCACCGTGGGACGGTTGATACCCCTGGCCGTGAGCGCGGCAAGCGG
TTTTCTGGGACAGTTGGGCTGGGTTTGGGGAGCCTATGACATTTTCGGTT
TCGCCGGTGCAACTGCCGCGGCGGCGGGCGCAGGCGTCTTTGCGGGCGGC
GGCCACTCGCGACGTGACGGTGCGCTGCACGCGTCGCTGGCAGGGATACT
CTTGGGTAACGGCCTGGCGGCGGCGGCGATACTGTCGGCGCGCGGCGCGA
TGTGGCTCTTACGAGGGTAAAAGACGTTAATCACATGTTCATATAGCAGC
ACACAATGAAGTACATGCTGCGCTCTCACCGGTGC
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Coding sequence (CDS) from alignment at Contig_120:292372..293106-

>mRNA_14715 ID=mRNA_14715|Name=jgi.p|Trimin1|352491|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=561bp|location=Sequence derived from alignment at Contig_120:292372..293106- (Tribonema minus UTEX_B_3156 )
ATGGCTGCTGCTGCAGCGGCGCCTCATCAGGGATCGACTGGCAGTGGCAG
TAGAGTGACAATCACACCCTCCTACTACAGCATACTGGGCGTGCGGCGAT
GCGCAACAACAGACGAAATTGACAGGGCCTTCAAGCGCCTGGCACTGACC
CGGCACCCTGACAAAGGGGGTGATGCAGCAGCCTTTCAGCAGCTGCGCCG
AGCCCACGACGTGCTGCGCGATCCCGGGCAGCGAGCGATATACGACGAGT
GCGGTCCCAGCATGAGACCGTCCCCCGGCAACACCATCGGCAAGAGCACC
GTGGGACGGTTGATACCCCTGGCCGTGAGCGCGGCAAGCGGTTTTCTGGG
ACAGTTGGGCTGGGTTTGGGGAGCCTATGACATTTTCGGTTTCGCCGGTG
CAACTGCCGCGGCGGCGGGCGCAGGCGTCTTTGCGGGCGGCGGCCACTCG
CGACGTGACGGTGCGCTGCACGCGTCGCTGGCAGGGATACTCTTGGGTAA
CGGCCTGGCGGCGGCGGCGATACTGTCGGCGCGCGGCGCGATGTGGCTCT
TACGAGGGTAA
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