mRNA_14709 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|175004
Unique NamemRNA_14709
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|175004 vs. uniprot
Match: A0A835ZEN9_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZEN9_9STRA)

HSP 1 Score: 588 bits (1516), Expect = 1.970e-212
Identity = 291/291 (100.00%), Postives = 291/291 (100.00%), Query Frame = 1 
Query:    1 LARYDLSLPGSALVAVHVSKTGGTTLDHVLQKGVGGRGLGPGVAQLQPDCVLEKWMYFAWREMPISERFNYTTCQIVSGEVDAWTLRAWVGEPETTPPGDRRKHLVTVLRDPYARLLSQFDHNTHWEKAKMAECATLYDVLEPRSRCVARLAAAPGNIVDKYRSWQAANVGDAAHLASTFSFFGLTEHFFASLCLLYYTFRDAPRFERLCARGAAGAALVPRKNRKDPRFNYTEAARNDVALRERCRDTNAADFALYDAAAALFRARVAAMEAETGISGFLLEEPSGVEGG 873
            LARYDLSLPGSALVAVHVSKTGGTTLDHVLQKGVGGRGLGPGVAQLQPDCVLEKWMYFAWREMPISERFNYTTCQIVSGEVDAWTLRAWVGEPETTPPGDRRKHLVTVLRDPYARLLSQFDHNTHWEKAKMAECATLYDVLEPRSRCVARLAAAPGNIVDKYRSWQAANVGDAAHLASTFSFFGLTEHFFASLCLLYYTFRDAPRFERLCARGAAGAALVPRKNRKDPRFNYTEAARNDVALRERCRDTNAADFALYDAAAALFRARVAAMEAETGISGFLLEEPSGVEGG
Sbjct:    1 LARYDLSLPGSALVAVHVSKTGGTTLDHVLQKGVGGRGLGPGVAQLQPDCVLEKWMYFAWREMPISERFNYTTCQIVSGEVDAWTLRAWVGEPETTPPGDRRKHLVTVLRDPYARLLSQFDHNTHWEKAKMAECATLYDVLEPRSRCVARLAAAPGNIVDKYRSWQAANVGDAAHLASTFSFFGLTEHFFASLCLLYYTFRDAPRFERLCARGAAGAALVPRKNRKDPRFNYTEAARNDVALRERCRDTNAADFALYDAAAALFRARVAAMEAETGISGFLLEEPSGVEGG 291
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BLAST of jgi.p|Trimin1|175004 vs. uniprot
Match: F2UHC8_SALR5 (Uncharacterized protein n=1 Tax=Salpingoeca rosetta (strain ATCC 50818 / BSB-021) TaxID=946362 RepID=F2UHC8_SALR5)

HSP 1 Score: 56.2 bits (134), Expect = 2.300e-5
Identity = 72/298 (24.16%), Postives = 111/298 (37.25%), Query Frame = 1 
Query:   46 VHVSKTGGTTLDHVLQKGVGGRGLGPGVAQLQPDCVLEKWMYFAWREMPISERFNYTTCQIVSGEVDAWTLRAWVGEPETTPPGDRRKHLVTVLRDPYARLLSQFDH---------NTHWEKAKMAECATLYDVLEPRSRCVARLAAAPGNIVDKYRSWQA-----ANVGDAAHLASTFSFFGLTEHFFASLCLLYYTFR-----------------------DAPRFERLCARGAAGAALVPRKNRKDPRFNYTEAARNDVALRERCRDTNAADFALYDAAAALFRARVAAMEAETG 828
            +H+SKTGGTTL+H++Q+ V      P        C  EK  +         +    + C +++ E     +   +  P   P      H++ +LR P  R LSQF H         N  W        ++L ++ +             G +  +YR WQ+      N+     L +  +F G+T+ +  ++CL Y+TF+                       D  RF+    R         R      R N   +  +    RE   +    D ALYDAA  LF  RVA ME   G
Sbjct:   75 LHISKTGGTTLEHIVQQLV----RHPASPAAMTVCKTEKHPFSHPPLFADPKELERSGCNVITAEGRMRFIEQQL--PYVQP------HMLILLRHPVLRTLSQFRHDLIQESTLANKEWRTPYTGGFSSLKELYKNTK----------GVVHKRYRDWQSDLLYHPNITFPDALENM-TFIGITDFYKTTMCLFYFTFQIPSLLDGCQERPLTVYNKACQGDDCERFQNTKERHV-------RDEDNHKRLNDALSHVDTEVTRELIEEHTRLDQALYDAALDLFWRRVAVMEQVVG 342
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|175004 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A835ZEN9_9STRA1.970e-212100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
F2UHC8_SALR52.300e-524.16Uncharacterized protein n=1 Tax=Salpingoeca rosett... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_120contigContig_120:229904..230779 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|175004|e_gw1.120.74.1
Hectar predicted targeting categoryother localisation
TranscriptId175326
TrackFilteredModels1
ProteinId175004
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|175004gene_14709Tribonema minus UTEX_B_3156 geneContig_120 229904..230779 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_14709_1exon_14709_1Tribonema minus UTEX_B_3156 exonContig_120 229904..230779 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_14709CDS_14709Tribonema minus UTEX_B_3156 CDSContig_120 229904..230779 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|175004Trimin1|175004|e_gw1.120.74.1Tribonema minus UTEX_B_3156 polypeptideContig_120 229904..230779 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_14709 ID=mRNA_14709|Name=jgi.p|Trimin1|175004|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=876bp|location=Sequence derived from alignment at Contig_120:229904..230779+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
CTCGCTCGATACGACCTCAGCCTCCCGGGTTCTGCTCTGGTCGCGGTGCA
CGTGAGCAAGACCGGCGGCACCACCCTGGACCACGTCCTGCAGAAGGGGG
TGGGGGGGCGGGGGCTGGGGCCGGGCGTCGCGCAGCTCCAGCCCGACTGC
GTCCTCGAGAAGTGGATGTACTTTGCGTGGCGCGAGATGCCCATCAGCGA
GCGCTTCAACTACACGACGTGCCAGATCGTGTCGGGCGAGGTGGACGCGT
GGACGCTGCGCGCCTGGGTGGGCGAGCCGGAGACGACGCCGCCGGGGGAC
CGCCGCAAGCACCTCGTCACGGTGCTGCGCGACCCCTACGCGCGCCTGCT
GTCGCAGTTCGACCACAACACGCACTGGGAGAAGGCCAAGATGGCGGAGT
GCGCGACGCTGTATGACGTGCTCGAGCCGCGCTCGCGCTGCGTCGCGCGC
CTCGCCGCCGCGCCCGGCAACATCGTCGACAAGTACCGCAGCTGGCAGGC
CGCGAACGTCGGCGATGCGGCGCACCTAGCCTCCACCTTCTCCTTCTTCG
GCCTCACGGAGCACTTCTTCGCGTCGCTGTGCCTGCTGTACTACACGTTC
CGCGACGCGCCGCGCTTCGAGCGCCTGTGCGCGCGCGGCGCCGCGGGCGC
GGCCCTCGTCCCGCGCAAGAACCGCAAGGACCCGCGCTTCAACTACACGG
AGGCGGCGCGCAACGACGTGGCGCTGCGCGAGCGCTGCCGCGATACGAAT
GCCGCGGACTTTGCGCTGTACGACGCTGCGGCGGCGCTCTTCCGCGCGCG
CGTCGCGGCGATGGAGGCGGAGACGGGGATCAGCGGCTTTCTGCTGGAGG
AGCCTAGCGGCGTGGAGGGGGGGTGA
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protein sequence of jgi.p|Trimin1|175004

>Trimin1|175004|e_gw1.120.74.1 ID=Trimin1|175004|e_gw1.120.74.1|Name=jgi.p|Trimin1|175004|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=292bp
LARYDLSLPGSALVAVHVSKTGGTTLDHVLQKGVGGRGLGPGVAQLQPDC
VLEKWMYFAWREMPISERFNYTTCQIVSGEVDAWTLRAWVGEPETTPPGD
RRKHLVTVLRDPYARLLSQFDHNTHWEKAKMAECATLYDVLEPRSRCVAR
LAAAPGNIVDKYRSWQAANVGDAAHLASTFSFFGLTEHFFASLCLLYYTF
RDAPRFERLCARGAAGAALVPRKNRKDPRFNYTEAARNDVALRERCRDTN
AADFALYDAAAALFRARVAAMEAETGISGFLLEEPSGVEGG*
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mRNA from alignment at Contig_120:229904..230779+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_14709 ID=mRNA_14709|Name=jgi.p|Trimin1|175004|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=876bp|location=Sequence derived from alignment at Contig_120:229904..230779+ (Tribonema minus UTEX_B_3156 )
CTCGCTCGATACGACCTCAGCCTCCCGGGTTCTGCTCTGGTCGCGGTGCA
CGTGAGCAAGACCGGCGGCACCACCCTGGACCACGTCCTGCAGAAGGGGG
TGGGGGGGCGGGGGCTGGGGCCGGGCGTCGCGCAGCTCCAGCCCGACTGC
GTCCTCGAGAAGTGGATGTACTTTGCGTGGCGCGAGATGCCCATCAGCGA
GCGCTTCAACTACACGACGTGCCAGATCGTGTCGGGCGAGGTGGACGCGT
GGACGCTGCGCGCCTGGGTGGGCGAGCCGGAGACGACGCCGCCGGGGGAC
CGCCGCAAGCACCTCGTCACGGTGCTGCGCGACCCCTACGCGCGCCTGCT
GTCGCAGTTCGACCACAACACGCACTGGGAGAAGGCCAAGATGGCGGAGT
GCGCGACGCTGTATGACGTGCTCGAGCCGCGCTCGCGCTGCGTCGCGCGC
CTCGCCGCCGCGCCCGGCAACATCGTCGACAAGTACCGCAGCTGGCAGGC
CGCGAACGTCGGCGATGCGGCGCACCTAGCCTCCACCTTCTCCTTCTTCG
GCCTCACGGAGCACTTCTTCGCGTCGCTGTGCCTGCTGTACTACACGTTC
CGCGACGCGCCGCGCTTCGAGCGCCTGTGCGCGCGCGGCGCCGCGGGCGC
GGCCCTCGTCCCGCGCAAGAACCGCAAGGACCCGCGCTTCAACTACACGG
AGGCGGCGCGCAACGACGTGGCGCTGCGCGAGCGCTGCCGCGATACGAAT
GCCGCGGACTTTGCGCTGTACGACGCTGCGGCGGCGCTCTTCCGCGCGCG
CGTCGCGGCGATGGAGGCGGAGACGGGGATCAGCGGCTTTCTGCTGGAGG
AGCCTAGCGGCGTGGAGGGGGGGTGA
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Coding sequence (CDS) from alignment at Contig_120:229904..230779+

>mRNA_14709 ID=mRNA_14709|Name=jgi.p|Trimin1|175004|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=876bp|location=Sequence derived from alignment at Contig_120:229904..230779+ (Tribonema minus UTEX_B_3156 )
CTCGCTCGATACGACCTCAGCCTCCCGGGTTCTGCTCTGGTCGCGGTGCA
CGTGAGCAAGACCGGCGGCACCACCCTGGACCACGTCCTGCAGAAGGGGG
TGGGGGGGCGGGGGCTGGGGCCGGGCGTCGCGCAGCTCCAGCCCGACTGC
GTCCTCGAGAAGTGGATGTACTTTGCGTGGCGCGAGATGCCCATCAGCGA
GCGCTTCAACTACACGACGTGCCAGATCGTGTCGGGCGAGGTGGACGCGT
GGACGCTGCGCGCCTGGGTGGGCGAGCCGGAGACGACGCCGCCGGGGGAC
CGCCGCAAGCACCTCGTCACGGTGCTGCGCGACCCCTACGCGCGCCTGCT
GTCGCAGTTCGACCACAACACGCACTGGGAGAAGGCCAAGATGGCGGAGT
GCGCGACGCTGTATGACGTGCTCGAGCCGCGCTCGCGCTGCGTCGCGCGC
CTCGCCGCCGCGCCCGGCAACATCGTCGACAAGTACCGCAGCTGGCAGGC
CGCGAACGTCGGCGATGCGGCGCACCTAGCCTCCACCTTCTCCTTCTTCG
GCCTCACGGAGCACTTCTTCGCGTCGCTGTGCCTGCTGTACTACACGTTC
CGCGACGCGCCGCGCTTCGAGCGCCTGTGCGCGCGCGGCGCCGCGGGCGC
GGCCCTCGTCCCGCGCAAGAACCGCAAGGACCCGCGCTTCAACTACACGG
AGGCGGCGCGCAACGACGTGGCGCTGCGCGAGCGCTGCCGCGATACGAAT
GCCGCGGACTTTGCGCTGTACGACGCTGCGGCGGCGCTCTTCCGCGCGCG
CGTCGCGGCGATGGAGGCGGAGACGGGGATCAGCGGCTTTCTGCTGGAGG
AGCCTAGCGGCGTGGAGGGGGGGTGA
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