mRNA_14665 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|351634
Unique NamemRNA_14665
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
[Close]
BLAST of jgi.p|Trimin1|351634 vs. uniprot
Match: A0A835YGU3_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YGU3_9STRA)

HSP 1 Score: 149 bits (377), Expect = 8.420e-44
Identity = 116/116 (100.00%), Postives = 116/116 (100.00%), Query Frame = 2 
Query:   44 MKAVAAYLLCVLGGNASPSADDVSGVITAIGGEADDSAIAALISDMAGKSAEEVVAAGQKRLETVSVGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVDMGGGMDMFGGGEGGDY 391
            MKAVAAYLLCVLGGNASPSADDVSGVITAIGGEADDSAIAALISDMAGKSAEEVVAAGQKRLETVSVGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVDMGGGMDMFGGGEGGDY
Sbjct:    1 MKAVAAYLLCVLGGNASPSADDVSGVITAIGGEADDSAIAALISDMAGKSAEEVVAAGQKRLETVSVGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVDMGGGMDMFGGGEGGDY 116
[Close]
BLAST of jgi.p|Trimin1|351634 vs. uniprot
Match: A0A1V9ZUV4_9STRA (Ribosomal protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9ZUV4_9STRA)

HSP 1 Score: 93.2 bits (230), Expect = 1.380e-21
Identity = 82/116 (70.69%), Postives = 94/116 (81.03%), Query Frame = 2 
Query:   44 MKAVAAYLLCVLGGNASPSADDVSGVITAIGGEADDSAIAALISDMAGKSAEEVVAAGQKRLETVSVGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVDMGGGMDMFGGGEGGDY 391
            M+ VAA+LLCVLGGNA+PS  DVS VITA+GGEAD+  +A LI ++ GK   EV+A GQK+L TVS+G   XXXXXXXXXXXXXXXXXXXXXXXXXX  D+GGGMDMFGGG   DY
Sbjct:    1 MRHVAAFLLCVLGGNATPSVADVSAVITAVGGEADEERLALLIKELEGKDIAEVIAEGQKKLSTVSIGAASXXXXXXXXXXXXXXXXXXXXXXXXXX-ADLGGGMDMFGGGS--DY 113
[Close]
BLAST of jgi.p|Trimin1|351634 vs. uniprot
Match: A0A835ZFT3_9STRA (60s acidic ribosomal protein-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZFT3_9STRA)

HSP 1 Score: 87.8 bits (216), Expect = 1.910e-19
Identity = 78/116 (67.24%), Postives = 99/116 (85.34%), Query Frame = 2 
Query:   44 MKAVAAYLLCVLGGNASPSADDVSGVITAIGGEADDSAIAALISDMAGKSAEEVVAAGQKRLETVSVGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVDMGGGMDMFGGGEGGDY 391
            M+ +A Y++ VLGGNASPSA+DV+  ++++G EAD++ ++ LI++M GK   EV+ AG+K+L ++   XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVDMGGGMDMFGGGEGGDY
Sbjct:    1 MRHLAVYMMLVLGGNASPSAEDVTKALSSVGIEADEARLSQLIAEMEGKDLNEVMEAGKKKLASLGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVDMGGGMDMFGGGEGGDY 116
[Close]
BLAST of jgi.p|Trimin1|351634 vs. uniprot
Match: A0A662XMM2_9STRA (Uncharacterized protein n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662XMM2_9STRA)

HSP 1 Score: 86.7 bits (213), Expect = 1.340e-18
Identity = 78/127 (61.42%), Postives = 95/127 (74.80%), Query Frame = 2 
Query:   11 RPASNLCLIFKMKAVAAYLLCVLGGNASPSADDVSGVITAIGGEADDSAIAALISDMAGKSAEEVVAAGQKRLETVSVGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVDMGGGMDMFGGGEGGDY 391
            RP   + +  +M+ VAA LLCVLGGNA+PS  DV  V+ + GGE D      L+ ++ GK+ EEVVAAG+ +L +V+VG  XXXXXXXXXXXXXXXXXXXXXXXXXX   D+GGGMDMFGGG+ GDY
Sbjct:   27 RPLRLVAVAVQMRHVAALLLCVLGGNATPSVADVEKVVKSFGGEFDQEKTELLVKELEGKNIEEVVAAGKAKLSSVTVGASXXXXXXXXXXXXXXXXXXXXXXXXXX--ADLGGGMDMFGGGDDGDY 151
[Close]
BLAST of jgi.p|Trimin1|351634 vs. uniprot
Match: A0A1V9YWD7_9STRA (Uncharacterized protein n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9YWD7_9STRA)

HSP 1 Score: 84.3 bits (207), Expect = 3.950e-18
Identity = 77/116 (66.38%), Postives = 89/116 (76.72%), Query Frame = 2 
Query:   44 MKAVAAYLLCVLGGNASPSADDVSGVITAIGGEADDSAIAALISDMAGKSAEEVVAAGQKRLETVSVGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVDMGGGMDMFGGGEGGDY 391
            M+ VAAYLL VLGGN  P+ +DV+ VITA+GGE D   +A L+ ++ GK   EV+A GQK+L TVSVG    XXXXXXXXXXXXXXXXXXXXXXXXX  D+GGGMDMFGGG   DY
Sbjct:    1 MRHVAAYLLLVLGGNTKPTVEDVTKVITAVGGEVDADRLATLVKELEGKDIAEVIAEGQKKLATVSVGASSAXXXXXXXXXXXXXXXXXXXXXXXXX-ADLGGGMDMFGGGS--DY 113
[Close]
BLAST of jgi.p|Trimin1|351634 vs. uniprot
Match: A0A6A3U9U9_9STRA (Uncharacterized protein n=2 Tax=Phytophthora TaxID=4783 RepID=A0A6A3U9U9_9STRA)

HSP 1 Score: 85.5 bits (210), Expect = 4.040e-18
Identity = 74/122 (60.66%), Postives = 90/122 (73.77%), Query Frame = 2 
Query:   14 PASNLCLIFKMKAVAAYLLCVLGGNASPSADDVSGVITAIGGEADDSAIAALISDMAGKSAEEVVAAGQKRLETVSVGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVDMGGGMDMFGGGE 379
            PA  L  + KM+ VAA LLCVLGGNA+PS  D+  V+T+ GGE +      L+ ++ GK+ EEVVAAG+ ++ TVSVG     XXXXXXXXXXXXXXXXXXXXXX   +DMGGGMDMFGGG+
Sbjct:   33 PAKPLFTLNKMRHVAALLLCVLGGNATPSVADLEKVVTSFGGEFNQEQAEKLVKELEGKNIEEVVAAGKAKIATVSVGAAPAAXXXXXXXXXXXXXXXXXXXXXX---IDMGGGMDMFGGGD 151
[Close]
BLAST of jgi.p|Trimin1|351634 vs. uniprot
Match: A0A485KP81_9STRA (Aste57867_9957 protein n=2 Tax=Aphanomyces TaxID=100860 RepID=A0A485KP81_9STRA)

HSP 1 Score: 83.6 bits (205), Expect = 8.090e-18
Identity = 75/116 (64.66%), Postives = 87/116 (75.00%), Query Frame = 2 
Query:   44 MKAVAAYLLCVLGGNASPSADDVSGVITAIGGEADDSAIAALISDMAGKSAEEVVAAGQKRLETVSVGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVDMGGGMDMFGGGEGGDY 391
            M+ VAA+LL VLGGN +PSA DV  VITA+GGE D   +  L+ ++ GK   EV+A GQK+L  VS+G     XXXXXXXXXXXXXXXXXXXXXXXXX D+GGGMDMFGGG   DY
Sbjct:    1 MRHVAAFLLVVLGGNTTPSAADVEKVITAVGGEVDSEKLETLLKEVEGKDIYEVIAEGQKKLANVSIGGASAGXXXXXXXXXXXXXXXXXXXXXXXXXADLGGGMDMFGGGS--DY 114
[Close]
BLAST of jgi.p|Trimin1|351634 vs. uniprot
Match: A0A067BQ39_SAPPC (Uncharacterized protein n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067BQ39_SAPPC)

HSP 1 Score: 83.2 bits (204), Expect = 1.110e-17
Identity = 76/116 (65.52%), Postives = 87/116 (75.00%), Query Frame = 2 
Query:   44 MKAVAAYLLCVLGGNASPSADDVSGVITAIGGEADDSAIAALISDMAGKSAEEVVAAGQKRLETVSVGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVDMGGGMDMFGGGEGGDY 391
            M+ VAA+LL VLGGN +PS  DVS +ITA+GGE D   +  LI ++ GK   EV+A GQK+L TVSVG     XXXXXXXXXXXXXXXXXXXXXXXX  D+GGGMDMFGGG   DY
Sbjct:    1 MRHVAAFLLAVLGGNTTPSVADVSAIITAVGGEVDTERLETLIKELEGKDIYEVIAEGQKKLATVSVGASSGAXXXXXXXXXXXXXXXXXXXXXXXX-ADLGGGMDMFGGGS--DY 113
[Close]
BLAST of jgi.p|Trimin1|351634 vs. uniprot
Match: A0A6A4ZYF9_9STRA (Uncharacterized protein n=2 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A6A4ZYF9_9STRA)

HSP 1 Score: 79.3 bits (194), Expect = 3.500e-16
Identity = 78/116 (67.24%), Postives = 90/116 (77.59%), Query Frame = 2 
Query:   44 MKAVAAYLLCVLGGNASPSADDVSGVITAIGGEADDSAIAALISDMAGKSAEEVVAAGQKRLETVSVGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVDMGGGMDMFGGGEGGDY 391
            M+ VAA+LL VLGGN +PSA DV  VIT++GGE D   + AL+ ++ GK   EV+AAGQ +L TVSVG XXXXXXXXXXXXXXXXXXXXXXXXXXX   D+GGGMDMFGG    DY
Sbjct:    2 MRHVAAFLLLVLGGNTTPSAADVEKVITSVGGEVDSEQLEALLKEVEGKDIYEVIAAGQAKLATVSVGGXXXXXXXXXXXXXXXXXXXXXXXXXXX--ADLGGGMDMFGGSS--DY 113
[Close]
BLAST of jgi.p|Trimin1|351634 vs. uniprot
Match: A0A6G0XK03_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XK03_9STRA)

HSP 1 Score: 79.0 bits (193), Expect = 5.200e-16
Identity = 77/117 (65.81%), Postives = 90/117 (76.92%), Query Frame = 2 
Query:   44 MKAVAAYLLCVLGGNASPSADDVSGVITAIGGEADDSAIAALISDMAGKSAEEVVAAGQKRLETVSVGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-VDMGGGMDMFGGGEGGDY 391
            M+ VAA+LL VLGGNA+PS  DV  VITA+GGE D   + AL+ ++ GK   E++AAGQ +L TVSVG XXXXXXXXXXXXXXXXXXXXXXXXXX    +D+GGGMDMFGG    DY
Sbjct:    1 MRHVAAFLLVVLGGNATPSFADVEKVITAVGGEVDSERLEALLKEVEGKDVYELIAAGQAKLATVSVGGXXXXXXXXXXXXXXXXXXXXXXXXXXEEADLDLGGGMDMFGGSS--DY 115
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|351634 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835YGU3_9STRA8.420e-44100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A1V9ZUV4_9STRA1.380e-2170.69Ribosomal protein n=1 Tax=Achlya hypogyna TaxID=12... [more]
A0A835ZFT3_9STRA1.910e-1967.2460s acidic ribosomal protein-domain-containing pro... [more]
A0A662XMM2_9STRA1.340e-1861.42Uncharacterized protein n=1 Tax=Nothophytophthora ... [more]
A0A1V9YWD7_9STRA3.950e-1866.38Uncharacterized protein n=1 Tax=Thraustotheca clav... [more]
A0A6A3U9U9_9STRA4.040e-1860.66Uncharacterized protein n=2 Tax=Phytophthora TaxID... [more]
A0A485KP81_9STRA8.090e-1864.66Aste57867_9957 protein n=2 Tax=Aphanomyces TaxID=1... [more]
A0A067BQ39_SAPPC1.110e-1765.52Uncharacterized protein n=2 Tax=Saprolegnia TaxID=... [more]
A0A6A4ZYF9_9STRA3.500e-1667.24Uncharacterized protein n=2 Tax=Aphanomyces astaci... [more]
A0A6G0XK03_9STRA5.200e-1665.81Uncharacterized protein n=1 Tax=Aphanomyces euteic... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_95contigContig_95:347858..351111 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|351634|estExt_Genemark1.C_Ctg_950046
BRITEbr01610,ko00000,ko00001,ko00002,ko03011
KEGG ModuleM00177
KEGG Pathwayko03010,map03010
KEGG koko:K02943
GOsGO:0000184,GO:0000322,GO:0000323,GO:0000324,GO:0000956,GO:0001932,GO:0001934,GO:0002181,GO:0002182,GO:0003674,GO:0003735,GO:0005198,GO:0005488,GO:0005506,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005773,GO:0005829,GO:0005840,GO:0006139,GO:0006401,GO:0006402,GO:0006412,GO:0006413,GO:0006414,GO:0006417,GO:0006518,GO:0006605,GO:0006612,GO:0006613,GO:0006614,GO:0006725,GO:0006807,GO:0006810,GO:0006886,GO:0008047,GO:0008104,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009719,GO:0009889,GO:0009891,GO:0009892,GO:0009893,GO:0009987,GO:0010033,GO:0010243,GO:0010467,GO:0010468,GO:0010556,GO:0010557,GO:0010562,GO:0010604,GO:0010605,GO:0010608,GO:0010628,GO:0010629,GO:0014070,GO:0014074,GO:0015031,GO:0015833,GO:0015934,GO:0016070,GO:0016071,GO:0019207,GO:0019209,GO:0019220,GO:0019222,GO:0019439,GO:0019538,GO:0019887,GO:0022625,GO:0022626,GO:0030234,GO:0030295,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031399,GO:0031401,GO:0032147,GO:0032268,GO:0032270,GO:0032991,GO:0033036,GO:0033365,GO:0033674,GO:0034248,GO:0034250,GO:0034613,GO:0034641,GO:0034645,GO:0034655,GO:0042221,GO:0042325,GO:0042327,GO:0042886,GO:0043021,GO:0043043,GO:0043085,GO:0043167,GO:0043169,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043549,GO:0043603,GO:0043604,GO:0044093,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044265,GO:0044267,GO:0044270,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0044877,GO:0045047,GO:0045184,GO:0045727,GO:0045859,GO:0045860,GO:0045937,GO:0046483,GO:0046683,GO:0046700,GO:0046872,GO:0046907,GO:0046914,GO:0048518,GO:0048519,GO:0048522,GO:0050789,GO:0050790,GO:0050794,GO:0050896,GO:0051171,GO:0051173,GO:0051174,GO:0051179,GO:0051234,GO:0051246,GO:0051247,GO:0051338,GO:0051347,GO:0051591,GO:0051641,GO:0051649,GO:0051716,GO:0060255,GO:0065007,GO:0065009,GO:0070727,GO:0070887,GO:0070972,GO:0071310,GO:0071320,GO:0071407,GO:0071417,GO:0071495,GO:0071702,GO:0071704,GO:0071705,GO:0072594,GO:0072599,GO:0072657,GO:0080090,GO:0090150,GO:0090304,GO:0098772,GO:1901360,GO:1901361,GO:1901564,GO:1901566,GO:1901575,GO:1901576,GO:1901698,GO:1901699,GO:1901700,GO:1901701,GO:1904400,GO:1904401,GO:1904587,GO:1904588,GO:1990904,GO:2000112
Preferred nameRPLP2
Descriptiontranslational elongation
COG categoryJ
Max annot lvl2759|Eukaryota
EggNOG OGsCOG2058@1|root,KOG3449@2759|Eukaryota
Evalue1.34e-17
Seed ortholog112098.XP_008620787.1
Hectar predicted targeting categorysignal peptide
TranscriptId351956
TrackFilteredModels1
ProteinId351634
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|351634gene_14665Tribonema minus UTEX_B_3156 geneContig_95 347858..351111 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|351634Trimin1|351634|estExt_Genemark1.C_Ctg_950046Tribonema minus UTEX_B_3156 polypeptideContig_95 348357..351015 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_14665_1exon_14665_1Tribonema minus UTEX_B_3156 exonContig_95 347858..347900 +
exon_14665_2exon_14665_2Tribonema minus UTEX_B_3156 exonContig_95 348357..348503 +
exon_14665_3exon_14665_3Tribonema minus UTEX_B_3156 exonContig_95 348990..349125 +
exon_14665_4exon_14665_4Tribonema minus UTEX_B_3156 exonContig_95 350948..351111 +


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR5_14665UTR5_14665Tribonema minus UTEX_B_3156 five_prime_UTRContig_95 347858..347900 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_14665CDS_14665Tribonema minus UTEX_B_3156 CDSContig_95 348357..348503 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR3_14665UTR3_14665Tribonema minus UTEX_B_3156 three_prime_UTRContig_95 351016..351111 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_14665 ID=mRNA_14665|Name=jgi.p|Trimin1|351634|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=490bp|location=Sequence derived from alignment at Contig_95:347858..351111+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
GTGTGAGACAAGGCCAGCGAGCAATCTCTGCTTGATATTCAAGATGAAGG
CTGTGGCCGCGTACCTCCTGTGCGTGCTCGGCGGCAACGCGAGCCCATCC
GCAGATGACGTCTCCGGCGTGATCACCGCCATTGGCGGCGAGGCCGACGA
CTCCGCCATCGCCGCCCTTATCAGCGACATGGCCGGCAAGAGCGCCGAGG
AGGTCGTAGCAGCGGGCCAGAAGCGGCTGGAGACGGTATCGGTGGGCGGA
GGCGATGGCGGCGGCGGCGGCGGCGGCGCGGGCGGCGCGGCGGCAGCAGC
ACCTGTTGAGGAGAAGAAGGAGGAGGAGGAGGAGGAGGTGGACATGGGCG
GCGGCATGGACATGTTTGGCGGCGGCGAGGGCGGCGACTACTGAGCACTG
CCACCCGTGTATGGTCTCTAGTCTTCAGTGGCGCTCGCGGTGCGGACGCT
GCTGGTAATGCATGCGCCGTCAGCGGGCAGCTCTTCTCCC
back to top

protein sequence of jgi.p|Trimin1|351634

>Trimin1|351634|estExt_Genemark1.C_Ctg_950046 ID=Trimin1|351634|estExt_Genemark1.C_Ctg_950046|Name=jgi.p|Trimin1|351634|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=117bp
MKAVAAYLLCVLGGNASPSADDVSGVITAIGGEADDSAIAALISDMAGKS
AEEVVAAGQKRLETVSVGGGDGGGGGGGAGGAAAAAPVEEKKEEEEEEVD
MGGGMDMFGGGEGGDY*
back to top

mRNA from alignment at Contig_95:347858..351111+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_14665 ID=mRNA_14665|Name=jgi.p|Trimin1|351634|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=3254bp|location=Sequence derived from alignment at Contig_95:347858..351111+ (Tribonema minus UTEX_B_3156 )
GTGTGAGACAAGGCCAGCGAGCAATCTCTGCTTGATATTCAAGGTGAGCG
TAGAGGATGCCCTCTCGTGCAAGCAAAATCATGAAAGAAACGCTGCGGTA
TTGGCATTGGTGTTTAAGAACTGCTGCAAACGAGCACTTCTAGGTTGTTT
ACGGCTCGGGCGACACACAGCCCCCTGCTTGCCTTGACAAGTTGCGCGCT
AGTCACATGTTTGGATTGCATTCATTATATGGTCATGCAATCCTCGTGAA
GTTCCTCTCTCTTTGAGACTGCGTGTTGGCCGCAAGTTTACTGGTACCCC
TGCCTCTGCTGGTCTGAGGGTGGTCTGATCTTGCTCCAGGTCATTCCCTT
CTTAGCAGTAGCCTGGCCTCAACAAGCTCAAAGCATGCACTACCACATGC
ATTATCGGTATTTGTTTCAGCGGATTCGGTGCGGCGATCTGCAGCAAGTA
CGCGCATCCTCGAGCTCACGTGCTGCGCGTGCTCCCTGTGCAAGTGCAGA
TGAAGGCTGTGGCCGCGTACCTCCTGTGCGTGCTCGGCGGCAACGCGAGC
CCATCCGCAGATGACGTCTCCGGCGTGATCACCGCCATTGGCGGCGAGGC
CGACGACTCCGCCATCGCCGCCCTTATCAGCGACATGGCCGGCAAGGTGG
GTACTGTAGCATGTGTCGTGTGTTGCACGCTTGGCACAGCACATTTGTGC
ACAAGTTGCATATTTTCATAGGGTTTCGCCCCTCATGTGGAAGTAAATGA
AGTACTGTAGCACATTGACGGTTACAAATACCAACTGTCAGCAACTTTGA
CTGTTGTGTGCACCCACTGTTGAACGAAACTAGTGTGGCTGTGGGCAGCG
CAGCTGCTGCACCGCCATACACACCCGAGCAAAGTATCCTTGCACACATC
AACATCTCATGTGCGAGCGTGTACTCAGCCCCTGCTCTGCAGCGCGATGT
CAGCTCCATCGGCAATTCTCGCTGCGCACTGCTGCAACAGACACGCCAGC
ACCGCTTCCCTGTGAAGCATGCATGTGCACCTGGGACTTCAACCTGTCAC
TGAGCTCAGCCTGTGTACATACTTCTCAGCCGCTGACATTGCACACTTGG
TAATCTATACTCCTGATTTCGCGCGCTTTCAGAGCGCCGAGGAGGTCGTA
GCAGCGGGCCAGAAGCGGCTGGAGACGGTATCGGTGGGCGGAGGCGATGG
CGGCGGCGGCGGCGGCGGCGCGGGCGGCGCGGCGGCAGCAGCACCTGTTG
AGGAGAAGAAGGAGGAGGTGCGTTTGAGGCGTACGAGTGTTGCGCCGTGT
GGGAGGGCGGTGCATACATTGAAGTAATTACGGGTGGGGTTAGGGTTACG
GTGAGGGTTGGGGTTGTGCCATCCTGCATCCATGGCTGCATTTGCAGTAC
ATCGTGTACCGCAGGCGAGGGGTGTTGTACAGCCTTCAGCAGCTCCTGTT
GAGGAGAAGAAGGAAGAGCTGCGCTTGAGATGCAGCGACTGTCAGTTACG
TCAGTTACTTTGTGTGGGACAGTCGTACATGCATACCATGCTGCTTGTAC
GGGTAGAAGGCGACAAGTGCAGCCCCTGCTGAGGAGAAGAAGGATGAGGG
AATTTGAGATTTAGAGCCTGTCCGTTGAGCTGTGTGGAAGAGCCATACAG
TGTACGTACATACATACAGTGTATGGCATACGTGCATGCCATGCAGGAGT
ACTGAAGGCAAGTTGTGATTCAGGACGTTTGCGGCCCAAAGTCTGCACTA
TGATGTAGTTGAGGTTGTGTATGTTGAGTAGCCGTTCAACTTTCGAGGTC
TGCTCTGGGATAGAGTCAGCAGTCGAGTTTGTTGAACTTGAGTTGTTGTT
TGACTCTCAAGATGCGCTCGAAGGCCTGCCAGATCCCAAATACTTATCAC
GAGCCGTTGGTGGCAGAGCGCCCGCTGAATCGCTTTGAGATTGACGGGGG
AGGGGGACACGCGCCACAAAGTCAACTGTGGCAGTGGGCGTCTGTGTCCA
CATGTGCATGTGGTCTGTGTCATGTCCGTGGGCATACATGCGAATTGTGC
GGTGCAGCGGGTCCCTGACATCTGCCTGTAAGACCACCGCTGGCTGTCAG
ATGCCACTGCCATTCAATGTGAATGTGGCAAGGGCGTGCCGTTGCACAAG
TTCAACTGCAACTGCAAGTGCTGCATCGAACCACACAGCGGTACCACAGT
CCGCGTCCGTACAACTCTTGAGTGTAGGGAGTGCAGGCGGTACATGCAAG
CGCTGCGCGCTTTATCGTACTTCAAGTATGTGTTCAAATTGGCGCATGCA
CTTGTATGGGTCACTGAACGCCCCGTGCAGAAAGGCGTTGCACATGGACT
CATCGTTTGTAGATTGGCAGCTTCATCGCCAACGCCGCTGCATCACCACC
GTTGCCTCTGCCTGTAGCGATCAAGCCACCACTTTGAAGTGTGAATGTGC
ATTGCATTGCTGCGGATGGTAGTAGTGACTAGTGATGGTGGTCGCCATCC
CGTCCACTGGCGCTCGTTCCAGCGCACCTTTTGTGCTGTGCTTCTCGTCC
AGGTCACCCCTCTCACTCATATTGAGAGTGACTGTCCATTCAGGGCTCTG
CGGAGGGGGATGACGCGCCAGTCTTATAGCCCTCACTGTCGCTCCCGCAT
ACTGTCTGCTCCACATGGCGCTTGCGCAGCGGCGGACCGCTGAGCGGGCA
CTGAGGCCGCCAGCATTACCATCAACCTAATGAAAACGAATCAAAAGATT
GTAGAGCTCTAGGTGACAAGGGATGGTTAGCCGCAAGTGCCGTCCACCAG
TAATCGTGGTCGCCGCATAATAATAATACTGTTTTTAGCTCGATGAGAAT
GTCCAATGCGCACCGCCGGTGCATCACCCCGTGCGCGCCCCCACGACGGC
CGTCTGTACTGCTCACAGTGCCGGCTTCAACTTGGAGACTTGAACTTGAA
GTTATCGCCTCAATTGCCCTTTCGCGTGTTGCTGACTCTTGTCCGTCGTT
CACCGCTCACACTGCCGGCTCCAATTTCAACATGAAGTTGCAGTGTTGAC
GCACCTCACTGACCGTTGTCCGCTCTTGTGCGCGCGCGGCAGGAGGAGGA
GGTGGACATGGGCGGCGGCATGGACATGTTTGGCGGCGGCGAGGGCGGCG
ACTACTGAGCACTGCCACCCGTGTATGGTCTCTAGTCTTCAGTGGCGCTC
GCGGTGCGGACGCTGCTGGTAATGCATGCGCCGTCAGCGGGCAGCTCTTC
TCCC
back to top

Coding sequence (CDS) from alignment at Contig_95:347858..351111+

>mRNA_14665 ID=mRNA_14665|Name=jgi.p|Trimin1|351634|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=351bp|location=Sequence derived from alignment at Contig_95:347858..351111+ (Tribonema minus UTEX_B_3156 )
ATGAAGGCTGTGGCCGCGTACCTCCTGTGCGTGCTCGGCGGCAACGCGAG
CCCATCCGCAGATGACGTCTCCGGCGTGATCACCGCCATTGGCGGCGAGG
CCGACGACTCCGCCATCGCCGCCCTTATCAGCGACATGGCCGGCAAGAGC
GCCGAGGAGGTCGTAGCAGCGGGCCAGAAGCGGCTGGAGACGGTATCGGT
GGGCGGAGGCGATGGCGGCGGCGGCGGCGGCGGCGCGGGCGGCGCGGCGG
CAGCAGCACCTGTTGAGGAGAAGAAGGAGGAGGAGGAGGAGGAGGTGGAC
ATGGGCGGCGGCATGGACATGTTTGGCGGCGGCGAGGGCGGCGACTACTG
A
back to top