mRNA_1463 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|161795
Unique NamemRNA_1463
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|161795 vs. uniprot
Match: A0A835Z7J4_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z7J4_9STRA)

HSP 1 Score: 87.0 bits (214), Expect = 2.990e-18
Identity = 38/38 (100.00%), Postives = 38/38 (100.00%), Query Frame = 1 
Query:    1 MEHVTKRQCELCRKKPSFGREWLQPTRCSDHKEDDMDN 114
            MEHVTKRQCELCRKKPSFGREWLQPTRCSDHKEDDMDN
Sbjct:    1 MEHVTKRQCELCRKKPSFGREWLQPTRCSDHKEDDMDN 38
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BLAST of jgi.p|Trimin1|161795 vs. uniprot
Match: A0A836CFL9_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CFL9_9STRA)

HSP 1 Score: 71.2 bits (173), Expect = 1.290e-11
Identity = 30/38 (78.95%), Postives = 34/38 (89.47%), Query Frame = 1 
Query:    1 MEHVTKRQCELCRKKPSFGREWLQPTRCSDHKEDDMDN 114
            MEHVT + CELCRK+PSFGREW QP RCSDHKEDDM++
Sbjct:   51 MEHVTGKHCELCRKQPSFGREWHQPLRCSDHKEDDMED 88
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|161795 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A835Z7J4_9STRA2.990e-18100.00Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
A0A836CFL9_9STRA1.290e-1178.95Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_18contigContig_18:1120043..1120579 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|161795|e_gw1.18.85.1
Hectar predicted targeting categoryother localisation
TranscriptId162117
TrackFilteredModels1
ProteinId161795
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|161795gene_1463Tribonema minus UTEX_B_3156 geneContig_18 1120043..1120579 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_1463_1exon_1463_1Tribonema minus UTEX_B_3156 exonContig_18 1120043..1120579 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_1463CDS_1463Tribonema minus UTEX_B_3156 CDSContig_18 1120043..1120579 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|161795Trimin1|161795|e_gw1.18.85.1Tribonema minus UTEX_B_3156 polypeptideContig_18 1120043..1120579 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_1463 ID=mRNA_1463|Name=jgi.p|Trimin1|161795|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=537bp|location=Sequence derived from alignment at Contig_18:1120043..1120579+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGGAGCATGTGACCAAAAGGCAGTGTGAGCTTTGCCGCAAGAAGCCCAG
CTTTGGGAGAGAGTGGCTGCAGCCTACACGATGCTCAGATCACAAGGAAG
ATGACATGGACAATGTGGTAAGCAAGCGATGTGAGTTTTGTTCCAAACAG
CCCAGCTACGGGTACCATTGGATGCGTCCACTGCGCTGCATAGATCACAG
AGACGACGATATGGACAACGTGGTTAGCAAGCGGTGTGCTCTGTGCTCGA
CGCAACCCAGCTTCGGCTATGAATGGAAGCGACCACTCCGCTGCTCGGAT
CACAGGGAAGAGAACATGAAAAACGTTGTCGATAAGACATGTGAGCTCTG
CAGCAGACAACCCAGCCTTGGATACGACTGGCAGCACCCACTGCGTTGCG
CAGCTCATAAGGAGCAGGACATGATAAATGTGGTTGACAAGAGGTGCGAG
CTCTGCAGCAAGCAACCCAGTTTGGGGTATGAGTGGAGGTGCCCGCTGCG
CTGTGCAGATCACAAAGCAGAAGGTATGCACAATGTG
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protein sequence of jgi.p|Trimin1|161795

>Trimin1|161795|e_gw1.18.85.1 ID=Trimin1|161795|e_gw1.18.85.1|Name=jgi.p|Trimin1|161795|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=179bp
MEHVTKRQCELCRKKPSFGREWLQPTRCSDHKEDDMDNVVSKRCEFCSKQ
PSYGYHWMRPLRCIDHRDDDMDNVVSKRCALCSTQPSFGYEWKRPLRCSD
HREENMKNVVDKTCELCSRQPSLGYDWQHPLRCAAHKEQDMINVVDKRCE
LCSKQPSLGYEWRCPLRCADHKAEGMHNV
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mRNA from alignment at Contig_18:1120043..1120579+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_1463 ID=mRNA_1463|Name=jgi.p|Trimin1|161795|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=537bp|location=Sequence derived from alignment at Contig_18:1120043..1120579+ (Tribonema minus UTEX_B_3156 )
ATGGAGCATGTGACCAAAAGGCAGTGTGAGCTTTGCCGCAAGAAGCCCAG
CTTTGGGAGAGAGTGGCTGCAGCCTACACGATGCTCAGATCACAAGGAAG
ATGACATGGACAATGTGGTAAGCAAGCGATGTGAGTTTTGTTCCAAACAG
CCCAGCTACGGGTACCATTGGATGCGTCCACTGCGCTGCATAGATCACAG
AGACGACGATATGGACAACGTGGTTAGCAAGCGGTGTGCTCTGTGCTCGA
CGCAACCCAGCTTCGGCTATGAATGGAAGCGACCACTCCGCTGCTCGGAT
CACAGGGAAGAGAACATGAAAAACGTTGTCGATAAGACATGTGAGCTCTG
CAGCAGACAACCCAGCCTTGGATACGACTGGCAGCACCCACTGCGTTGCG
CAGCTCATAAGGAGCAGGACATGATAAATGTGGTTGACAAGAGGTGCGAG
CTCTGCAGCAAGCAACCCAGTTTGGGGTATGAGTGGAGGTGCCCGCTGCG
CTGTGCAGATCACAAAGCAGAAGGTATGCACAATGTG
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Coding sequence (CDS) from alignment at Contig_18:1120043..1120579+

>mRNA_1463 ID=mRNA_1463|Name=jgi.p|Trimin1|161795|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=537bp|location=Sequence derived from alignment at Contig_18:1120043..1120579+ (Tribonema minus UTEX_B_3156 )
ATGGAGCATGTGACCAAAAGGCAGTGTGAGCTTTGCCGCAAGAAGCCCAG
CTTTGGGAGAGAGTGGCTGCAGCCTACACGATGCTCAGATCACAAGGAAG
ATGACATGGACAATGTGGTAAGCAAGCGATGTGAGTTTTGTTCCAAACAG
CCCAGCTACGGGTACCATTGGATGCGTCCACTGCGCTGCATAGATCACAG
AGACGACGATATGGACAACGTGGTTAGCAAGCGGTGTGCTCTGTGCTCGA
CGCAACCCAGCTTCGGCTATGAATGGAAGCGACCACTCCGCTGCTCGGAT
CACAGGGAAGAGAACATGAAAAACGTTGTCGATAAGACATGTGAGCTCTG
CAGCAGACAACCCAGCCTTGGATACGACTGGCAGCACCCACTGCGTTGCG
CAGCTCATAAGGAGCAGGACATGATAAATGTGGTTGACAAGAGGTGCGAG
CTCTGCAGCAAGCAACCCAGTTTGGGGTATGAGTGGAGGTGCCCGCTGCG
CTGTGCAGATCACAAAGCAGAAGGTATGCACAATGTG
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