mRNA_14618 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|172383
Unique NamemRNA_14618
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|172383 vs. uniprot
Match: A0A836C7D2_9STRA (Ankyrin repeat-containing domain protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C7D2_9STRA)

HSP 1 Score: 251 bits (642), Expect = 5.350e-82
Identity = 209/209 (100.00%), Postives = 209/209 (100.00%), Query Frame = 1 
Query:    1 MSQFQQKQLAAAQSTVARSFQETNVHLFCEQGDLAEVRKAIEEKGEIVDKRDTRLQTPLHCACTGGHAQAMQVASYLLSXXXXXXXXXXXXXXXXXXXXXXXXAECCKMLIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQAPMDVIGELCYVRHDIAKAIKTKVCVVRRGVYMRHTSMWVLHTVLVFPSIH 627
            MSQFQQKQLAAAQSTVARSFQETNVHLFCEQGDLAEVRKAIEEKGEIVDKRDTRLQTPLHCACTGGHAQAMQVASYLLSXXXXXXXXXXXXXXXXXXXXXXXXAECCKMLIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQAPMDVIGELCYVRHDIAKAIKTKVCVVRRGVYMRHTSMWVLHTVLVFPSIH
Sbjct:    1 MSQFQQKQLAAAQSTVARSFQETNVHLFCEQGDLAEVRKAIEEKGEIVDKRDTRLQTPLHCACTGGHAQAMQVASYLLSXXXXXXXXXXXXXXXXXXXXXXXXAECCKMLIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQAPMDVIGELCYVRHDIAKAIKTKVCVVRRGVYMRHTSMWVLHTVLVFPSIH 209
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BLAST of jgi.p|Trimin1|172383 vs. uniprot
Match: D8LNE6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNE6_ECTSI)

HSP 1 Score: 73.6 bits (179), Expect = 3.500e-13
Identity = 37/73 (50.68%), Postives = 52/73 (71.23%), Query Frame = 1 
Query:    1 MSQFQQKQLAAAQSTVARSFQETNVHLFCEQGDLAEVRKAIEEKGEIVDKRDTRLQTPLHCACTGGHAQAMQV 219
            MSQ+Q  +   A S V +++QETN+HLF E G+LAEV++ + + GE+VDKR+TR QT LH AC GGH +   +
Sbjct:    1 MSQWQLHKTEIASSEVQQTYQETNLHLFAENGNLAEVQRCLAD-GEMVDKRNTRRQTALHSACLGGHHEVADI 72
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|172383 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A836C7D2_9STRA5.350e-82100.00Ankyrin repeat-containing domain protein n=1 Tax=T... [more]
D8LNE6_ECTSI3.500e-1350.68Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_92contigContig_92:517833..520416 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|172383|e_gw1.92.85.1
BRITEko00000,ko01009,ko03400
KEGG koko:K15504
Descriptionproteasome regulatory particle assembly
COG categoryL
Max annot lvl2759|Eukaryota
EggNOG OGsCOG0666@1|root,KOG4412@2759|Eukaryota
Evalue5.74e-14
Seed ortholog2880.D8LNE6
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionAnkyrin repeat-containing domain
Ec32 orthologEc-04_004140.1
TranscriptId172705
TrackFilteredModels1
ProteinId172383
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|172383gene_14618Tribonema minus UTEX_B_3156 geneContig_92 517833..520416 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|172383Trimin1|172383|e_gw1.92.85.1Tribonema minus UTEX_B_3156 polypeptideContig_92 517833..520416 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_14618_3exon_14618_3Tribonema minus UTEX_B_3156 exonContig_92 517833..518093 -
exon_14618_2exon_14618_2Tribonema minus UTEX_B_3156 exonContig_92 518700..518857 -
exon_14618_1exon_14618_1Tribonema minus UTEX_B_3156 exonContig_92 520206..520416 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_14618CDS_14618Tribonema minus UTEX_B_3156 CDSContig_92 520206..520416 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_14618 ID=mRNA_14618|Name=jgi.p|Trimin1|172383|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=630bp|location=Sequence derived from alignment at Contig_92:517833..520416- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGAGCCAATTTCAGCAGAAGCAGCTGGCGGCAGCCCAGTCGACGGTGGC
TCGCTCATTTCAAGAAACCAATGTACACCTCTTTTGTGAGCAAGGCGATT
TGGCTGAAGTGCGCAAGGCAATAGAGGAGAAGGGGGAGATTGTGGACAAG
AGGGACACTAGGCTGCAGACTCCACTGCACTGCGCCTGCACTGGTGGCCA
TGCACAGGCAATGCAGGTGGCATCGTACCTGCTGAGCAAGGGTGCAGATG
CAGAGGCAAAGGACGGGCAACTAGTGACGCCGCTGCACTGCGCAGCCGCG
GGTGGGAATGCGGAGTGCTGCAAAATGCTGATTGCTAAGGGCGCTGTTGT
CAATGCCAGGGATGACAAGAGCGCCACGCCGCTACACTGGGCGTGCCAGC
GTGGCCACATGGATTGTGTCACGCTGCTGCTAGCACACGGGGCCAATACA
TCTGCGGTGAACAGCAAGAAGCAGGCGCCAATGGACGTGATAGGGGAGCT
CTGCTACGTACGACACGACATTGCCAAGGCCATCAAAACAAAGGTATGTG
TAGTCAGACGAGGCGTTTATATGCGCCATACTTCAATGTGGGTACTTCAC
ACTGTACTTGTATTTCCAAGTATACATTGA
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protein sequence of jgi.p|Trimin1|172383

>Trimin1|172383|e_gw1.92.85.1 ID=Trimin1|172383|e_gw1.92.85.1|Name=jgi.p|Trimin1|172383|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=210bp
MSQFQQKQLAAAQSTVARSFQETNVHLFCEQGDLAEVRKAIEEKGEIVDK
RDTRLQTPLHCACTGGHAQAMQVASYLLSKGADAEAKDGQLVTPLHCAAA
GGNAECCKMLIAKGAVVNARDDKSATPLHWACQRGHMDCVTLLLAHGANT
SAVNSKKQAPMDVIGELCYVRHDIAKAIKTKVCVVRRGVYMRHTSMWVLH
TVLVFPSIH*
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mRNA from alignment at Contig_92:517833..520416-

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_14618 ID=mRNA_14618|Name=jgi.p|Trimin1|172383|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=2584bp|location=Sequence derived from alignment at Contig_92:517833..520416- (Tribonema minus UTEX_B_3156 )
ATGAGCCAATTTCAGCAGAAGCAGCTGGCGGCAGCCCAGTCGACGGTGGC
TCGCTCATTTCAAGAAACCAATGTACACCTCTTTTGTGAGCAAGGCGATT
TGGCTGAAGTGCGCAAGGCAATAGAGGAGAAGGGGGAGATTGTGGACAAG
AGGGACACTAGGCTGCAGACTCCACTGCACTGCGCCTGCACTGGTGGCCA
TGCACAGGCAAGTGGGGCACAAAGCCAGCTCACTTGCACGCTAATATGCG
TCGTCACGGATTCCGCGCCGACATGAGAGATGCGCTTGAGGGACGCTGCT
GAGTAACTGATGTGCATGAAGACGACAAGGACAGCGGCAACACCTGGTGG
ACATCGTGCTTGCATGACCTGGCAAGCTGCGCCGCCCGTACTCGCCGTAG
CCTTATCGCAGTCATCTCGGGCCCTCTATAGCATGCGCCTTCAACATGCA
GAGGATACCTTTGACGAGAAAGCTGCCCCGATCTTCATGATGATTGCAGT
GGAATTCGATGATGTAAGCAGTGTGCAGCATTGCAGGTGCTGATCATCAA
GTCAGAGCATACTGGCGTCAAAATGGCTCCATACCCCAAGTACATGTGGT
TGAGTGGCCAGTCACACGATCGCTGCAAGTGCCTGATGCAGTACAATGCT
GAGGCAAAACAAATGCCTCGAACACGGACGGCTATGCTGCTGGGGTGGGG
GAGGACGCGAAGGTCAAGCACCACACCGGCACCTTGACGTCATCTTGGGC
TTTTGTGCCATTCGTACAGGAGTCGTACGGACGGCTGGGCAAGCAGACAA
GCCTTTTTGTTAAGGAGTTGGCAATGCACTCAGCACTGTGCTCAGGGGGG
GGGAAGGCAGATGTGTTACGCAAGGCCGGGTTAGCTAAGCGTCAGATCCT
CATTGAGCTGAGCATATCGCTGGCGCGGGAGTTGGCGGAGCGCGTCATGG
CGTACACACGTGGAGCGCGAATGCTGGGCTGTGTTGCGGCGCCGGTATCC
AAGCTCCTAGGGCACAGCGCAGACTAGGCTGCTGCGTTGACGCAAGCTTT
TCGATTGCATAGGCAACCCGGCCTCCCTTGGGCCTTTATAAATACAAGTC
CATGGCGCGGGAGTTGGCGGAGCGCGTCATGGCGTACACACGTGGAGCGC
GAATGCTGGGCTGTGTTGCGGCGCCGGTATCCAAGCTCCTAGGGCACAGC
GCAGACTAGGCTGCTGCGTTGACGCAAGCTTTTCGATTGCATAGGCAACC
CGGCCTCCCTTGGGCCTTTATAAATACAAGTCCATACGTCCATACGTACA
ATGCTGAGCTTCACTTCATTCCTGGTTGTCTGAACTCCCCATGTCTCACA
AGATATCGTATCAACGTGGGGAGAAAGTAGGCAGCTTCAGCACAAAAATG
TTTGCAAGATCGTCCGACTTTCAAGCCCGCTACTGCCAACTGCACTACTT
CTGTGTCATCCGCTTACTATAGAGAACTTCACATTGCGCCCTTGGGGGAT
GATGAAGAGAGCGACATTTCTGCAAACTCACTAATGCTGTATGCTGTGCC
CTGTTGTAGTGCAGGTGGCATCGTACCTGCTGAGCAAGGGTGCAGATGCA
GAGGCAAAGGACGGGCAACTAGTGACGCCGCTGCACTGCGCAGCCGCGGG
TGGGAATGCGGAGTGCTGCAAAATGCTGATTGCTAAGGGCGCTGTTGTCA
ATGCCAGGGATGACAAGGTGACACCCAATAATATTGGAAGGCTGAACAAC
CTTGCCAAAACACCATTACAACTCTGATGACGATAGTCACAAGTCGTCGT
AACTTGTACAAGGCACGAAGTAGCACAGCTTCCAGGTCTCAGTCACATTG
CGTATCAGTACGCATGCCATTGAAGCACACATGCGCCACATGAGTGTTTG
TGGCCACATAAAAAGTAAAAACCTGACTCTGCTGCAGGTGGGTCGTCTGC
ATTGGCCCAAAGGGGAAAAAATGGCACAAAGCAGATGAAGATGCAGCGCA
TTCACACCTAGCATGACATCACATCTGACAAAGACACAAGGTGCTTGACC
TGCATTGGAAAACACATTTTTTCGAAGACTTTGCTGTTGTACACATATTG
TGATTGCAGAGCATACTGCGCCTGGGCGGACCGCAACAGTGCAGGCCCAT
GTCTGGTTGCATGGTTGGGTGAGAGGCAAACCAGGGTCGCAACGAGGAGT
AGGTCTGGAACTAGTGCATCAGTGGCCCGCAGTTGCTACCATATGCAATC
AAATCAGCACATTGGCCTTGTCGTGACTCGCTTGCACGCATCAATGGGCA
ATGTTGGTTGCGCAAACGTGCAGAGCGCCACGCCGCTACACTGGGCGTGC
CAGCGTGGCCACATGGATTGTGTCACGCTGCTGCTAGCACACGGGGCCAA
TACATCTGCGGTGAACAGCAAGAAGCAGGCGCCAATGGACGTGATAGGGG
AGCTCTGCTACGTACGACACGACATTGCCAAGGCCATCAAAACAAAGGTA
TGTGTAGTCAGACGAGGCGTTTATATGCGCCATACTTCAATGTGGGTACT
TCACACTGTACTTGTATTTCCAAGTATACATTGA
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Coding sequence (CDS) from alignment at Contig_92:517833..520416-

>mRNA_14618 ID=mRNA_14618|Name=jgi.p|Trimin1|172383|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=630bp|location=Sequence derived from alignment at Contig_92:517833..520416- (Tribonema minus UTEX_B_3156 )
ATGAGCCAATTTCAGCAGAAGCAGCTGGCGGCAGCCCAGTCGACGGTGGC
TCGCTCATTTCAAGAAACCAATGTACACCTCTTTTGTGAGCAAGGCGATT
TGGCTGAAGTGCGCAAGGCAATAGAGGAGAAGGGGGAGATTGTGGACAAG
AGGGACACTAGGCTGCAGACTCCACTGCACTGCGCCTGCACTGGTGGCCA
TGCACAGGCAATGCAGGTGGCATCGTACCTGCTGAGCAAGGGTGCAGATG
CAGAGGCAAAGGACGGGCAACTAGTGACGCCGCTGCACTGCGCAGCCGCG
GGTGGGAATGCGGAGTGCTGCAAAATGCTGATTGCTAAGGGCGCTGTTGT
CAATGCCAGGGATGACAAGAGCGCCACGCCGCTACACTGGGCGTGCCAGC
GTGGCCACATGGATTGTGTCACGCTGCTGCTAGCACACGGGGCCAATACA
TCTGCGGTGAACAGCAAGAAGCAGGCGCCAATGGACGTGATAGGGGAGCT
CTGCTACGTACGACACGACATTGCCAAGGCCATCAAAACAAAGGTATGTG
TAGTCAGACGAGGCGTTTATATGCGCCATACTTCAATGTGGGTACTTCAC
ACTGTACTTGTATTTCCAAGTATACATTGA
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