mRNA_14571 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|177262
Unique NamemRNA_14571
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
[Close]
BLAST of jgi.p|Trimin1|177262 vs. uniprot
Match: A0A836CMY6_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CMY6_9STRA)

HSP 1 Score: 363 bits (931), Expect = 1.070e-125
Identity = 218/218 (100.00%), Postives = 218/218 (100.00%), Query Frame = 1 
Query:    1 CDAGYYCTAGSYLRNPVGLAGIGDLCPAGHYCPQATGTPVACPIGTYLPSTGSDSIQDCIVCTPGYYCGTEGLAAPTGQCSAGYYCQSGVAVAAPTTGTGAGYTYGGAICPAXXXXPARSLLPAACVDGTYAPTTGAAACAPCLAAFACAGTATITXXXXXXXXXXXXGTGAAAPAXAIGTYGNTTGLAAASDCAXXXXXXXXXXXXXXAAAAAVRAW 654
            CDAGYYCTAGSYLRNPVGLAGIGDLCPAGHYCPQATGTPVACPIGTYLPSTGSDSIQDCIVCTPGYYCGTEGLAAPTGQCSAGYYCQSGVAVAAPTTGTGAGYTYGGAICPAXXXXPARSLLPAACVDGTYAPTTGAAACAPCLAAFACAGTATITXXXXXXXXXXXXGTGAAAPAXAIGTYGNTTGLAAASDCAXXXXXXXXXXXXXXAAAAAVRAW
Sbjct:    1 CDAGYYCTAGSYLRNPVGLAGIGDLCPAGHYCPQATGTPVACPIGTYLPSTGSDSIQDCIVCTPGYYCGTEGLAAPTGQCSAGYYCQSGVAVAAPTTGTGAGYTYGGAICPAXXXXPARSLLPAACVDGTYAPTTGAAACAPCLAAFACAGTATITXXXXXXXXXXXXGTGAAAPAXAIGTYGNTTGLAAASDCAXXXXXXXXXXXXXXAAAAAVRAW 218
[Close]
BLAST of jgi.p|Trimin1|177262 vs. uniprot
Match: A0A067CMH4_SAPPC (Uncharacterized protein (Fragment) n=1 Tax=Saprolegnia parasitica (strain CBS 223.65) TaxID=695850 RepID=A0A067CMH4_SAPPC)

HSP 1 Score: 127 bits (320), Expect = 3.180e-30
Identity = 85/194 (43.81%), Postives = 103/194 (53.09%), Query Frame = 1 
Query:    1 CDAGYYCTAGSYLRNPVGLAGIGDLCPAGHYCPQATGTPVACPIGTYLPSTGSDSIQDCIVCTPGYYCGTEGLAAPTGQCSAGYYCQSGVAVAAPTTGTGAGYTYGGAICPAXXXXPARSLLPAACVDGTYAPTTGAAACAPCLAAFACAGTATITXXXXXXXXXXXXGTGAAAPAXAIGTYGNTTGLAAASDC 582
            C AGY CT G+   NP G +  G +CPAG YCP  +  P+ CP+GTY P+T   ++ DC     G +    GL APTG CSAGYYC S   +A PT G        G +CP     P  S  P  CV+GTYA + G A C PC A   C G  T     XXXXXXX   TGA+   X    + N TGL A ++C
Sbjct: 1532 CMAGYTCTGGAMFPNPNGQS-YGTICPAGMYCPLGSALPLPCPLGTYRPNTLGQNLTDCTPSPGGTFSNATGLTAPTGVCSAGYYCTSTAFIATPTDGVT------GNLCPVGFFCPLGSSSPLKCVEGTYASSLGQALCTPCPAGSFCDGVLTDRHQVXXXXXXXPPSTGASQXXXXXXXFNNGTGLPAITNC 1718
[Close]
BLAST of jgi.p|Trimin1|177262 vs. uniprot
Match: A0A8B8DU00_CRAVI (uncharacterized protein LOC111129343 isoform X1 n=11 Tax=Crassostrea virginica TaxID=6565 RepID=A0A8B8DU00_CRAVI)

HSP 1 Score: 127 bits (319), Expect = 4.420e-30
Identity = 89/194 (45.88%), Postives = 106/194 (54.64%), Query Frame = 1 
Query:    1 CDAGYYCTAGSYLRNPVGLAGIGDLCPAGHYCPQATGTPVACPIGTYLPSTGSDSIQDCIVCTPGYYCGTEGLAAPTGQCSAGYYCQSGVAVAAPTTGTGAGYTYGGAICPAXXXXPARSLLPAACVDGTYAPTTGAAACAPCLAAFACAGTATITXXXXXXXXXXXXGTGAAAPAXAIGTYGNTTGLAAASDC 582
            C AGYYCT GS   NPVG +  GD CPAGHYCP+ +  P ACP GTY P+T S +   C+ C PG +C + GL+A +G C+ G+YC  G + +AP  GT       G ICPA    PA S     C +GTY   TGA+AC  C     C        XXXXXXXX    TGA       GTY   +GLA  S C
Sbjct: 4813 CLAGYYCTNGSEEANPVGKS-YGDECPAGHYCPEKSYQPTACPAGTYNPNTRSTNETACLSCDPGKFCNSTGLSAVSGDCTQGFYCAGGASSSAPIDGTT------GNICPAGSYCPAGSPQHLFCPNGTYTNHTGASACYDCPEGHYCVNKDRADLXXXXXXXXYQ--TGADLQPCPAGTYNPVSGLANVSQC 4997
[Close]
BLAST of jgi.p|Trimin1|177262 vs. uniprot
Match: UPI000B457A43 (uncharacterized protein LOC110453079 n=1 Tax=Mizuhopecten yessoensis TaxID=6573 RepID=UPI000B457A43)

HSP 1 Score: 125 bits (315), Expect = 1.510e-29
Identity = 73/149 (48.99%), Postives = 85/149 (57.05%), Query Frame = 1 
Query:    1 CDAGYYCTAGSYLRNPVGLAGIGDLCPAGHYCPQATGTPVACPIGTYLPSTGSDSIQDCIVCTPGYYCGTEGLAAPTGQCSAGYYCQSGVAVAAPTTGTGAGYTYGGAICPAXXXXPARSLLPAACVDGTYAPTTGAAACAPCLAAFAC 447
            C AGYYC+ G+  +NP   +  GD C AG YCP  TGTP+ CPIGTYLP TG  S+ DC+ C PG YC TEGL   TG C  GYYC  G   ++PT GT       G +   XXXX      P  C DGTY   T A+AC  C A + C
Sbjct: 5005 CLAGYYCSLGAISQNPTAQS-YGDTCTAGDYCPVGTGTPLPCPIGTYLPDTGRTSVADCLDCAPGKYCLTEGLMNYTGDCDPGYYCDRGANSSSPTDGTT------GDVXXXXXXXXXXXASPIPCADGTYMNHTLASACDTCPARYYC 5146
[Close]
BLAST of jgi.p|Trimin1|177262 vs. uniprot
Match: R7TS72_CAPTE (Chitin-binding type-2 domain-containing protein n=1 Tax=Capitella teleta TaxID=283909 RepID=R7TS72_CAPTE)

HSP 1 Score: 125 bits (313), Expect = 2.800e-29
Identity = 67/149 (44.97%), Postives = 80/149 (53.69%), Query Frame = 1 
Query:    1 CDAGYYCTAGSYLRNPVGLAGIGDLCPAGHYCPQATGTPVACPIGTYLPSTGSDSIQDCIVCTPGYYCGTEGLAAPTGQCSAGYYCQSGVAVAAPTTGTGAGYTYGGAICPAXXXXPARSLLPAACVDGTYAPTTGAAACAPCLAAFAC 447
            C  GYYCT G+   NP G    GD+CPAG YCP  TGTP+ CP+GTYLP  G  +  DC+ C+ G YC T G    TGQC  G+YC  G + + PT GT       G ICPA    P  +  P  C DG Y   T A+ C  C   + C
Sbjct: 4593 CTEGYYCTLGAINPNPRGET-YGDVCPAGSYCPAGTGTPIPCPVGTYLPDPGMTAESDCLPCSGGKYCDTFGQTNYTGQCDPGFYCAIGASSSTPTDGTS------GDICPAGAFCPVGTTTPFPCEDGYYMNHTMASECDVCPPRYYC 4734
[Close]
BLAST of jgi.p|Trimin1|177262 vs. uniprot
Match: A0A6G0S9T2_9STRA (Uncharacterized protein n=2 Tax=Phytophthora fragariae TaxID=53985 RepID=A0A6G0S9T2_9STRA)

HSP 1 Score: 124 bits (310), Expect = 6.990e-29
Identity = 65/154 (42.21%), Postives = 86/154 (55.84%), Query Frame = 1 
Query:    1 CDAGYYCTAGSYLRNPVGLAGIGDLCPAGHYCPQATGTPVACPIGTYLPSTGSDSIQDCIVCTPGYYCGTEGLAAPTGQCSAGYYCQSGVAVAAPTTGTGAGYTYGGAICPAXXXXPARSLLPAACVDGTYAPTTGAAACAPCLAAFACAGTAT 462
            C AG+ C   S + NPV  +  GD+CP  +YCP+ TG+ +ACP+G++  STG  S+  C +C  G +C   GL AP+G CSAGY+C    + ++PT G        GA+CPA    P  S  P  C  GTYA   G A+C  C   F C G AT
Sbjct:  807 CLAGFVCFGASPVANPVAQS-YGDVCPVANYCPEGTGSAIACPLGSFRASTGGTSLASCSLCPGGKHCSATGLTAPSGSCSAGYFCVLNASSSSPTDGVT------GAVCPAGFYCPEASSTPVKCAAGTYAADRGQASCDECPMGFFCDGVAT 953
[Close]
BLAST of jgi.p|Trimin1|177262 vs. uniprot
Match: A0A6A3NX77_9STRA (Ephrin_rec_like domain-containing protein n=7 Tax=Phytophthora TaxID=4783 RepID=A0A6A3NX77_9STRA)

HSP 1 Score: 124 bits (310), Expect = 7.000e-29
Identity = 65/154 (42.21%), Postives = 86/154 (55.84%), Query Frame = 1 
Query:    1 CDAGYYCTAGSYLRNPVGLAGIGDLCPAGHYCPQATGTPVACPIGTYLPSTGSDSIQDCIVCTPGYYCGTEGLAAPTGQCSAGYYCQSGVAVAAPTTGTGAGYTYGGAICPAXXXXPARSLLPAACVDGTYAPTTGAAACAPCLAAFACAGTAT 462
            C AG+ C   S + NPV  +  GD+CP  +YCP+ TG+ +ACP+G++  STG  S+  C +C  G +C   GL AP+G CSAGY+C    + ++PT G        GA+CPA    P  S  P  C  GTYA   G A+C  C   F C G AT
Sbjct: 1499 CLAGFVCFGASPVANPVAQS-YGDVCPVANYCPEGTGSAIACPLGSFRASTGGTSLASCSLCPGGKHCSATGLTAPSGSCSAGYFCVLNASSSSPTDGVT------GAVCPAGFYCPEASSTPVKCAAGTYAADRGQASCDECPMGFFCDGVAT 1645
[Close]
BLAST of jgi.p|Trimin1|177262 vs. uniprot
Match: A0A6A3PAM2_9STRA (Ephrin_rec_like domain-containing protein n=6 Tax=Phytophthora TaxID=4783 RepID=A0A6A3PAM2_9STRA)

HSP 1 Score: 124 bits (310), Expect = 7.000e-29
Identity = 65/154 (42.21%), Postives = 86/154 (55.84%), Query Frame = 1 
Query:    1 CDAGYYCTAGSYLRNPVGLAGIGDLCPAGHYCPQATGTPVACPIGTYLPSTGSDSIQDCIVCTPGYYCGTEGLAAPTGQCSAGYYCQSGVAVAAPTTGTGAGYTYGGAICPAXXXXPARSLLPAACVDGTYAPTTGAAACAPCLAAFACAGTAT 462
            C AG+ C   S + NPV  +  GD+CP  +YCP+ TG+ +ACP+G++  STG  S+  C +C  G +C   GL AP+G CSAGY+C    + ++PT G        GA+CPA    P  S  P  C  GTYA   G A+C  C   F C G AT
Sbjct: 1571 CLAGFVCFGASPVANPVAQS-YGDVCPVANYCPEGTGSAIACPLGSFRASTGGTSLASCSLCPGGKHCSATGLTAPSGSCSAGYFCVLNASSSSPTDGVT------GAVCPAGFYCPEASSTPVKCAAGTYAADRGQASCDECPMGFFCDGVAT 1717
[Close]
BLAST of jgi.p|Trimin1|177262 vs. uniprot
Match: A0A6A4G474_9STRA (Ephrin_rec_like domain-containing protein n=1 Tax=Phytophthora rubi TaxID=129364 RepID=A0A6A4G474_9STRA)

HSP 1 Score: 124 bits (310), Expect = 7.010e-29
Identity = 65/154 (42.21%), Postives = 86/154 (55.84%), Query Frame = 1 
Query:    1 CDAGYYCTAGSYLRNPVGLAGIGDLCPAGHYCPQATGTPVACPIGTYLPSTGSDSIQDCIVCTPGYYCGTEGLAAPTGQCSAGYYCQSGVAVAAPTTGTGAGYTYGGAICPAXXXXPARSLLPAACVDGTYAPTTGAAACAPCLAAFACAGTAT 462
            C AG+ C   S + NPV  +  GD+CP  +YCP+ TG+ +ACP+G++  STG  S+  C +C  G +C   GL AP+G CSAGY+C    + ++PT G        GA+CPA    P  S  P  C  GTYA   G A+C  C   F C G AT
Sbjct: 1671 CLAGFVCFGASPVANPVAQS-YGDVCPVANYCPEGTGSAIACPLGSFRASTGGTSLASCSLCPGGKHCSATGLTAPSGSCSAGYFCVLNASSSSPTDGVT------GAVCPAGFYCPEASSTPVKCAAGTYAADRGQASCDECPMGFFCDGVAT 1817
[Close]
BLAST of jgi.p|Trimin1|177262 vs. uniprot
Match: A0A6G0M0R9_9STRA (Uncharacterized protein n=2 Tax=Phytophthora fragariae TaxID=53985 RepID=A0A6G0M0R9_9STRA)

HSP 1 Score: 124 bits (310), Expect = 7.020e-29
Identity = 65/154 (42.21%), Postives = 86/154 (55.84%), Query Frame = 1 
Query:    1 CDAGYYCTAGSYLRNPVGLAGIGDLCPAGHYCPQATGTPVACPIGTYLPSTGSDSIQDCIVCTPGYYCGTEGLAAPTGQCSAGYYCQSGVAVAAPTTGTGAGYTYGGAICPAXXXXPARSLLPAACVDGTYAPTTGAAACAPCLAAFACAGTAT 462
            C AG+ C   S + NPV  +  GD+CP  +YCP+ TG+ +ACP+G++  STG  S+  C +C  G +C   GL AP+G CSAGY+C    + ++PT G        GA+CPA    P  S  P  C  GTYA   G A+C  C   F C G AT
Sbjct: 2237 CLAGFVCFGASPVANPVAQS-YGDVCPVANYCPEGTGSAIACPLGSFRASTGGTSLASCSLCPGGKHCSATGLTAPSGSCSAGYFCVLNASSSSPTDGVT------GAVCPAGFYCPEASSTPVKCAAGTYAADRGQASCDECPMGFFCDGVAT 2383
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|177262 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A836CMY6_9STRA1.070e-125100.00Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
A0A067CMH4_SAPPC3.180e-3043.81Uncharacterized protein (Fragment) n=1 Tax=Saprole... [more]
A0A8B8DU00_CRAVI4.420e-3045.88uncharacterized protein LOC111129343 isoform X1 n=... [more]
UPI000B457A431.510e-2948.99uncharacterized protein LOC110453079 n=1 Tax=Mizuh... [more]
R7TS72_CAPTE2.800e-2944.97Chitin-binding type-2 domain-containing protein n=... [more]
A0A6G0S9T2_9STRA6.990e-2942.21Uncharacterized protein n=2 Tax=Phytophthora fraga... [more]
A0A6A3NX77_9STRA7.000e-2942.21Ephrin_rec_like domain-containing protein n=7 Tax=... [more]
A0A6A3PAM2_9STRA7.000e-2942.21Ephrin_rec_like domain-containing protein n=6 Tax=... [more]
A0A6A4G474_9STRA7.010e-2942.21Ephrin_rec_like domain-containing protein n=1 Tax=... [more]
A0A6G0M0R9_9STRA7.020e-2942.21Uncharacterized protein n=2 Tax=Phytophthora fraga... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_148contigContig_148:357244..359184 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|177262|e_gw1.148.41.1
Max annot lvl121069|Pythiales
EggNOG OGs29MQV@1|root,2RV0X@2759|Eukaryota,1MD2N@121069|Pythiales
Evalue1.16e-27
Seed ortholog115417.EPrPW00000014112
Hectar predicted targeting categoryother localisation
TranscriptId177584
TrackFilteredModels1
ProteinId177262
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|177262gene_14571Tribonema minus UTEX_B_3156 geneContig_148 357244..359184 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|177262Trimin1|177262|e_gw1.148.41.1Tribonema minus UTEX_B_3156 polypeptideContig_148 357244..359184 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_14571_3exon_14571_3Tribonema minus UTEX_B_3156 exonContig_148 357244..357604 -
exon_14571_2exon_14571_2Tribonema minus UTEX_B_3156 exonContig_148 358009..358112 -
exon_14571_1exon_14571_1Tribonema minus UTEX_B_3156 exonContig_148 358993..359184 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_14571CDS_14571Tribonema minus UTEX_B_3156 CDSContig_148 358993..359184 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_14571 ID=mRNA_14571|Name=jgi.p|Trimin1|177262|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=657bp|location=Sequence derived from alignment at Contig_148:357244..359184- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
TGCGACGCGGGCTACTACTGCACCGCCGGCTCCTACCTGCGCAACCCAGT
AGGGCTCGCGGGCATCGGCGACCTCTGTCCAGCGGGCCACTACTGCCCCC
AAGCAACGGGCACCCCTGTTGCGTGTCCCATTGGCACGTACCTGCCGTCC
ACGGGGTCTGACTCCATTCAGGACTGCATCGTGTGCACGCCGGGGTACTA
CTGCGGAACCGAGGGGCTGGCGGCGCCCACGGGCCAGTGCTCAGCGGGCT
ACTACTGCCAGTCCGGGGTCGCCGTGGCCGCGCCCACCACCGGCACCGGC
GCTGGCTACACGTACGGCGGCGCCATCTGCCCGGCGGGCTACTACTGCCC
CGCGCGCTCGCTGCTGCCGGCGGCGTGCGTCGACGGCACGTACGCGCCCA
CGACCGGCGCGGCGGCGTGCGCGCCGTGCCTCGCGGCGTTTGCGTGCGCG
GGGACGGCGACGATCACTCCGGTCGCCTGCGCGGCGGGGAGGTACTGTCC
TACGGGCACCGGCGCCGCCGCGCCGGCGTGCGCGATCGGCACGTACGGCA
ACACCACCGGGCTCGCCGCGGCGTCCGACTGCGCGGCGTGCACGGCGGGG
AGCTACTGCGCGACGGCGGTGAGCACTGCCGCTGCTGCTGCTGTGCGCGC
TTGGTGA
back to top

protein sequence of jgi.p|Trimin1|177262

>Trimin1|177262|e_gw1.148.41.1 ID=Trimin1|177262|e_gw1.148.41.1|Name=jgi.p|Trimin1|177262|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=219bp
CDAGYYCTAGSYLRNPVGLAGIGDLCPAGHYCPQATGTPVACPIGTYLPS
TGSDSIQDCIVCTPGYYCGTEGLAAPTGQCSAGYYCQSGVAVAAPTTGTG
AGYTYGGAICPAGYYCPARSLLPAACVDGTYAPTTGAAACAPCLAAFACA
GTATITPVACAAGRYCPTGTGAAAPACAIGTYGNTTGLAAASDCAACTAG
SYCATAVSTAAAAAVRAW*
back to top

mRNA from alignment at Contig_148:357244..359184-

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_14571 ID=mRNA_14571|Name=jgi.p|Trimin1|177262|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1941bp|location=Sequence derived from alignment at Contig_148:357244..359184- (Tribonema minus UTEX_B_3156 )
TGCGACGCGGGCTACTACTGCACCGCCGGCTCCTACCTGCGCAACCCAGT
AGGGCTCGCGGGCATCGGCGACCTCTGTCCAGCGGGCCACTACTGCCCCC
AAGCAACGGGCACCCCTGTTGCGTGTCCCATTGGCACGTACCTGCCGTCC
ACGGGGTCTGACTCCATTCAGGACTGCATCGTGTGCACGCCGGTGCGTCG
CGCTTGCGCAAATGCAATGTGTGCCTCCGCTGTGGTGACAAGTCTGCCAG
GGTTTTGTAGTCCACGTGTGGGTGGCCGGTCGTGCTGTAGGCTGTACGCT
ATAGCGGCGCTGCGCGACACTTCCGAGTACTTGAAACATGTAGAAGTACA
ATCGAGCCAATTGGGACTGCGTTGTGTGCACGCCGGTGCGGCTCACCTAC
ATCCTCAGTGTATTCCATGCGTTGGCTTCAAGTTTCTGTAGTCTGGGTTT
GCGTGGCCAGTCGTGCTGAGCAAGTGCTGAACGATCACCGGAGTTCATGT
GTGAGCGAACAACACAACATTGCATAAGTGTGCGTGCCGGCGCGTTCCCC
TGCCGCACGGATCCCCCCCCCCCCTAGCCCACTGTTGCATTGCCAAGCAG
CACCTATGACCGCAACGGCGTGCACCGGTGTTGCTGCAGCAATCGCGCCG
GTGACAGTCGCGCTTGGTGCGGAGAAGAGTCGCGCTTGATGCGGAGGTGC
AGAATCGCTCGAGCCTGCGGCGCACCGCCAGGCTCCGAGGCGCCGGCTAC
GCTGCTGTTGTGATGTACATGCGATGGGTCAGCGCACTGCGCAAAGACAG
CGTGCGCCGGCGCCGTCTGCGATCGCGGCTGCGCTGCGTTGCTTCACAAC
ATCGAGGACGACGATTGTGTGCACCAGCGTTGCACGGTGTGCAGTTGGCA
CTGAACAACGCGTGCTCAGTGATCGCACCTGTACTATGTTGCCTCACAAC
AGCAAGCATGATATGCCGACGTTTGTGTACACCAGTGTTGCGCCGTGTGC
AGTTACAATGCATGTTCGGGGGTGCTGACTCTGCGAGAATGGCCCCCACC
CCCCCCCTCTCCCGCCTGGCAGGGGTACTACTGCGGAACCGAGGGGCTGG
CGGCGCCCACGGGCCAGTGCTCAGCGGGCTACTACTGCCAGTCCGGGGTC
GCCGTGGCCGCGCCCACCACCGGCACGTACACCACAACGTACACAGGTAA
GAAGTAGCTGCTGATTTGGCATCGCGCGCATGGCTCATGCGTCATTGCTT
GCTGACGTGTGCTGCTGCGCGCGTCCTGCTGCTCCCAGCACGTGCTGCAT
GTGGCCGCGGACCTTGCCTGGAGAGCGTCGCCGCCATGTGCCGCCTCCCA
TCTTTACTGGCTGCTTGCGCATCCGCCTCCCCCCGCACGAATACACTGAG
AGCGCTCGACATCGCCGCGCATTACATCGAGGCGGCTGCACTCTTGAGTT
CACAGGTGACGGCCCTCCTTCCCCCACTGCCCGCCTGCCCCCCCCCTGAC
TCACCCCCCCCTCTCCTCCCCCCATTGCCCGCCCCTCCCCCCCCCGTGTG
CGCAGCGGGCGGCGGCGCGTACACGAGCAGCGGCGCTGGCTACACGTACG
GCGGCGCCATCTGCCCGGCGGGCTACTACTGCCCCGCGCGCTCGCTGCTG
CCGGCGGCGTGCGTCGACGGCACGTACGCGCCCACGACCGGCGCGGCGGC
GTGCGCGCCGTGCCTCGCGGCGTTTGCGTGCGCGGGGACGGCGACGATCA
CTCCGGTCGCCTGCGCGGCGGGGAGGTACTGTCCTACGGGCACCGGCGCC
GCCGCGCCGGCGTGCGCGATCGGCACGTACGGCAACACCACCGGGCTCGC
CGCGGCGTCCGACTGCGCGGCGTGCACGGCGGGGAGCTACTGCGCGACGG
CGGTGAGCACTGCCGCTGCTGCTGCTGTGCGCGCTTGGTGA
back to top

Coding sequence (CDS) from alignment at Contig_148:357244..359184-

>mRNA_14571 ID=mRNA_14571|Name=jgi.p|Trimin1|177262|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=657bp|location=Sequence derived from alignment at Contig_148:357244..359184- (Tribonema minus UTEX_B_3156 )
TGCGACGCGGGCTACTACTGCACCGCCGGCTCCTACCTGCGCAACCCAGT
AGGGCTCGCGGGCATCGGCGACCTCTGTCCAGCGGGCCACTACTGCCCCC
AAGCAACGGGCACCCCTGTTGCGTGTCCCATTGGCACGTACCTGCCGTCC
ACGGGGTCTGACTCCATTCAGGACTGCATCGTGTGCACGCCGGGGTACTA
CTGCGGAACCGAGGGGCTGGCGGCGCCCACGGGCCAGTGCTCAGCGGGCT
ACTACTGCCAGTCCGGGGTCGCCGTGGCCGCGCCCACCACCGGCACCGGC
GCTGGCTACACGTACGGCGGCGCCATCTGCCCGGCGGGCTACTACTGCCC
CGCGCGCTCGCTGCTGCCGGCGGCGTGCGTCGACGGCACGTACGCGCCCA
CGACCGGCGCGGCGGCGTGCGCGCCGTGCCTCGCGGCGTTTGCGTGCGCG
GGGACGGCGACGATCACTCCGGTCGCCTGCGCGGCGGGGAGGTACTGTCC
TACGGGCACCGGCGCCGCCGCGCCGGCGTGCGCGATCGGCACGTACGGCA
ACACCACCGGGCTCGCCGCGGCGTCCGACTGCGCGGCGTGCACGGCGGGG
AGCTACTGCGCGACGGCGGTGAGCACTGCCGCTGCTGCTGCTGTGCGCGC
TTGGTGA
back to top