mRNA_14546 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|353190
Unique NamemRNA_14546
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
BLAST of jgi.p|Trimin1|353190 vs. uniprot
Match: A0A835Z7P9_9STRA (RING-type domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z7P9_9STRA)

HSP 1 Score: 752 bits (1942), Expect = 6.160e-272
Identity = 378/378 (100.00%), Postives = 378/378 (100.00%), Query Frame = 1
Query:    1 MVALACVCAESAMVALWRARLLLLVPGTAQAVLSAFDKQGAYTGMCILLQHGIAGRLRVATPDIFGCNPLDFTLDEAVGKTDMPVVALISRSLQSNMAKDPGSCTFAQKVDNAWRAGAALAVVFDYVDEPLFRMQRATGGPVDSAKIPSVLISASSGRVLHALATACADPLGPRVFVDASDPYEKMFESLNMTMIGVVCGFLTSLLACASLFLCTSHRLLRRYDAIGGHGRPPRPLSLAQALRMPEKSVTCGCGLEKDSCAICLEAYRVGDKVMHLNCGHVLHAHCLRPWLAVSIAGIATAQRPERQRTCPLCKGDVTDPPPTPSLSRPSSLQGSSIRLVPSPVQPAHDTSRAAPPDAAARHDDSGGIAVEEGLRQGM 1134
            MVALACVCAESAMVALWRARLLLLVPGTAQAVLSAFDKQGAYTGMCILLQHGIAGRLRVATPDIFGCNPLDFTLDEAVGKTDMPVVALISRSLQSNMAKDPGSCTFAQKVDNAWRAGAALAVVFDYVDEPLFRMQRATGGPVDSAKIPSVLISASSGRVLHALATACADPLGPRVFVDASDPYEKMFESLNMTMIGVVCGFLTSLLACASLFLCTSHRLLRRYDAIGGHGRPPRPLSLAQALRMPEKSVTCGCGLEKDSCAICLEAYRVGDKVMHLNCGHVLHAHCLRPWLAVSIAGIATAQRPERQRTCPLCKGDVTDPPPTPSLSRPSSLQGSSIRLVPSPVQPAHDTSRAAPPDAAARHDDSGGIAVEEGLRQGM
Sbjct:    1 MVALACVCAESAMVALWRARLLLLVPGTAQAVLSAFDKQGAYTGMCILLQHGIAGRLRVATPDIFGCNPLDFTLDEAVGKTDMPVVALISRSLQSNMAKDPGSCTFAQKVDNAWRAGAALAVVFDYVDEPLFRMQRATGGPVDSAKIPSVLISASSGRVLHALATACADPLGPRVFVDASDPYEKMFESLNMTMIGVVCGFLTSLLACASLFLCTSHRLLRRYDAIGGHGRPPRPLSLAQALRMPEKSVTCGCGLEKDSCAICLEAYRVGDKVMHLNCGHVLHAHCLRPWLAVSIAGIATAQRPERQRTCPLCKGDVTDPPPTPSLSRPSSLQGSSIRLVPSPVQPAHDTSRAAPPDAAARHDDSGGIAVEEGLRQGM 378          
BLAST of jgi.p|Trimin1|353190 vs. uniprot
Match: A0A6H5L263_9PHAE (RING-type domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L263_9PHAE)

HSP 1 Score: 193 bits (490), Expect = 3.390e-52
Identity = 121/299 (40.47%), Postives = 166/299 (55.52%), Query Frame = 1
Query:  229 AVGKTDMPVVALISRSLQSNMAKDPGSCTFAQKVDNAWRAGAALAVVFDYVDEPLFRMQRAT--GGPVDSAKIPSVLISASSGRVLHALATACADPLGPRVFVDASDPYEKMFESLNMTMIGVVCGFLTSLLACASLFLCTSHRLLRRYDAIGGHGRPPRPLSLAQALRMPEKSVTCGCGLEKDSCAICLEAYRVGDKVMHLNCGHVLHAHCLRPWLAVSIAGIATAQRPERQRTCPLCKGDVT-----DPPPTPSLSRPSSLQGSSIRLVPSP-VQPAHDTSRAAPPDAAARHDDSGG 1101
            A G+ D+P  ALISRS +     DP  CTF  KV NA  AG ++ +V+D  +E LF+M R++  G      +IP VL+S +SG  L AL    +D  GP V+VD +DP+  MF ++++TM  +V GFL +LL C S+ + T HR LRRY+++       RP+SL + L++PE  V  G  LE DSC +CLEAYR+GDK+  L C H  HA C+ PWL             +RQR+CP+CK  VT      PP + S S           ++ +P +QPAH        D   R DD  G
Sbjct:  149 AAGEEDLPSAALISRSEKD----DPSGCTFETKVLNAQGAGFSMVIVYDSREENLFKMGRSSSKGAKHPKVEIPLVLVSHASGLALKALIETASDTRGPEVYVDNTDPF-GMFVTVDLTMFMLVTGFLLALLTCGSMMVVTLHRYLRRYESLVAGTN--RPMSLPEVLQLPEVRVEEGSRLEGDSCPVCLEAYRIGDKLRSLPCQHAFHAGCITPWLT------------QRQRSCPMCKDPVTLTVGLAPPTSSSPSSXXXXXXXXAAVITAPAMQPAHA-------DGVERGDDGAG 421          
BLAST of jgi.p|Trimin1|353190 vs. uniprot
Match: A0A836C717_9STRA (RING-type domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C717_9STRA)

HSP 1 Score: 160 bits (406), Expect = 4.340e-41
Identity = 131/379 (34.56%), Postives = 162/379 (42.74%), Query Frame = 1
Query:   61 LLLLVPGTAQAVLSAFDKQGAYT-------GMCILLQHGIAGRLRVATPDIFGCNPLDFTLDEAVGKTDMPV----VALISRSLQSNMAKDPGSCTFAQKVDNAWRAGAALAVVFDYVDEPLFRMQRATGGPVDSAKIPSVLISASSGRVLHALATACADPLGPRVFVDASDPYEKMFESLNMTMIGVVCGFLTSLLACASLFLCTSHRLLRRYDAIGGHGRPPRPLSLAQALRMPEKSVTCGCGLEKDSC----------------------------------AICLEAYRVGDKVMHLNCGHVLHAHCLRPWLAVSIAGIATAQRPERQRTCPLCKGDVTDPPPTPSLSRPSSLQGSSIRLVPSPVQPAHDTSRAA 1062
            LL LV   A A L A+D+ G +T               GI GRLRVA PDIFGC PLD +       TDM         I   L  ++ KDP +C+FA KV                                                                V+VD +DPYE++F SLNMTM+ VV  FL +LL CASLFLC+S RLL R +A     R  RPLSLAQA R+PE  V  G  LEKD                                    +ICLE Y VG++++ L C HV+H  C+ PW++            ERQRTCPLCK +V  PPP   L  PSS   +S R+ P    P    +R+A
Sbjct:    8 LLCLVCHLATASLVAYDENGGFTVPPSTTSTTLTCCPQGITGRLRVAKPDIFGCAPLDLSAPGDEDYTDMESGLRPALPIVVLLSRSLPKDPAACSFATKV----------------------------------------------------------------VYVDNTDPYEQLFFSLNMTMVAVVTTFLLALLLCASLFLCSSERLLGRREAAL---RSTRPLSLAQAARLPEVVVAAGGDLEKDRSEKIMIALNGSAQRLKVCCGTVXXXXXXXXXXXXXSICLEDYTVGERLVRLTCAHVMHRACVLPWIS------------ERQRTCPLCKTEVVPPPP---LRTPSSA--ASQRIFPYTYVPPLQANRSA 302          
BLAST of jgi.p|Trimin1|353190 vs. uniprot
Match: A0A0K9RHC9_SPIOL (RING-type domain-containing protein n=2 Tax=Spinacia oleracea TaxID=3562 RepID=A0A0K9RHC9_SPIOL)

HSP 1 Score: 85.5 bits (210), Expect = 3.490e-14
Identity = 93/302 (30.79%), Postives = 127/302 (42.05%), Query Frame = 1
Query:  151 HGIAGRLRVATPDIFGCNPLDFTLDEAVGKTDMPVVALISRSLQSNMAKDPGSCTFAQKVDNAWRAGAALAVVFDYVDEPLFRMQRATGGPVDSAKIPSVLISASSGRVLHALATACADPLGPRVFVDASDPYEKMFESLNMTMIGVVCGFLTSLLACASLFLC---TSHRLLR---RYDAIGGHGRPPRPLSLAQAL---RMPEKSVTCGCGLEKDSCAICLEAYRVGDKVMHLNCGHVLHAHCLRPWLAVSIAGIATAQRPERQRTCPLCKGDVT----DPPP---TPSLS-RPSSLQGS 1005
            HG+ G+L +A P I GC+ L   +++ VG    P+ ALI R          G C+F  K+  A  AG   A+++D  D        A  G     KIP+V +S ++G  +           GP V V     YE    S+      +   F++ L   A L  C     HR+ R   R      HG   R +    +L    + E++ T        +CAICLE YRVGDK+  L C H  H  C+  WL        T+ R      CP+CK D      +PP    TP LS  PSS   S
Sbjct:   35 HGMCGKLYIAEP-IDGCSQLRNRVEDVVGNCSSPI-ALIVR----------GGCSFEDKIRRAQNAGFEAAIIYDNEDVGSLV---AMAGNSAGIKIPAVFVSKATGNKIKTYGA------GPDVEVWILASYESSAWSI------MAISFISLLAMSAVLATCFFVRRHRIRRERPRARVREFHGMSSRLVKAMPSLVFTTVTEENCTAS------TCAICLEDYRVGDKIRILPCRHKFHTFCVDAWL--------TSWR----TFCPVCKRDARTSNGEPPASESTPLLSSNPSSAASS 291          
BLAST of jgi.p|Trimin1|353190 vs. uniprot
Match: A0A4Z2DTX1_SCHJA (E3 ubiquitin-protein ligase RNF13 isoform 2 n=3 Tax=Schistosoma japonicum TaxID=6182 RepID=A0A4Z2DTX1_SCHJA)

HSP 1 Score: 84.3 bits (207), Expect = 1.020e-13
Identity = 79/291 (27.15%), Postives = 127/291 (43.64%), Query Frame = 1
Query:  100 SAFDKQGAYTGMCILLQHGIAGRLRVATPDIFGCNPLDFTLDEAVGKTDMPVVALISRSLQSNMAKDPGSCTFAQKVDNAWRAGAALAVVFDYVDEPLFRMQRATGGPVDSAKIPSVLISASSGRVLHALATACADPLGPRVFVDASDPYEKMFESLNMTMIGVVCGFLTSLLACASLF---LCTSHRLLRRYDAIGGHGRPPRPLSLAQALRMPEKSVTCGCGLEKDSCAICLEAYRVGDKVMHLNCGHVLHAHCLRPWLAVSIAGIATAQRPERQRTCPLCKGDVTDPP 963
            S F+   A  G  I     + GR+  + P I GC      L +    + +P ++LI R          G+C+F++K   A R G   A++F+  D+  F M   T   ++   I +V++  S G +L  L   C     P  FV+    + +   S+ + +I ++   L S++A +  +   L   HR  RRY            L + +  ++PE     G   E ++C ICLE Y+ GDK+  L C H  H+ C+ PWL              R+  CP+CK  V + P
Sbjct:   34 SEFEDSEALFGNVITQGSLLLGRIHASQP-INGCVDR-IPLPKNASASTLPYISLIKR----------GNCSFSRKTIAAERGGYIAAIIFNDEDDSTFPMGHNTSEVIN---ISAVMVGLSDGELL--LKKYCV----PHYFVEILSAHRR---SIMLYLIPLITCLLLSIIALSVAYCIRLWDRHRRRRRYC-----------LPVKELHKIPETLFKEGSS-EFETCVICLEDYKDGDKLRLLPCRHAYHSKCVDPWLL------------RRRGCCPICKKKVHNRP 276          
BLAST of jgi.p|Trimin1|353190 vs. uniprot
Match: A0A8B9ARK4_PHODC (receptor homology region, transmembrane domain- and RING domain-containing protein 1-like isoform X1 n=2 Tax=Phoenix dactylifera TaxID=42345 RepID=A0A8B9ARK4_PHODC)

HSP 1 Score: 81.6 bits (200), Expect = 1.690e-13
Identity = 100/322 (31.06%), Postives = 129/322 (40.06%), Query Frame = 1
Query:  100 SAFDKQGAYTGMCILLQHGIAGRLRVATPDIFGCNPLDFTLDEAVGKTDMPVVALISRSLQSNMAKDPGSCTFAQKVDNAWRAGAALAVVFDYVDEPLFRMQRATGGPVDSAKIPSVLISASSGRVLHALATACADPLG--PRV-----FVDASDPYEKMFESLNMTMIGV-VCGFLTSLLACASLFLCTSHRLLRRYDAIGGHGRPPRPLSLAQALRMPEKSVTCGCGLEKDSCAICLEAYRVGDKVMHLNCGHVLHAHCLRPWLAVSIAGIATAQRPERQRTCPLCKGD-------VTDPPPTPSLSRPSSLQGSSIRLV 1020
            S F + GA     ++ + G +G +  A P +  C PL+      V        ALI R          G C F +KV NA  AG   A+++D  D PL     A GG  D   IP+V +S +SG  L   A      L   PR      F+ A       F SL  T+IG+ VC           LF+   H    R  A   HG   R +    +L     S          +CAICLE Y+VG+K+  L C H  HA C+  WL        TA R      CP+CK D       +     TP LS  SS   SS R +
Sbjct:    9 SLFSRLGAP----VVRRSGESGVMYPAEP-LDACTPLN----NKVVNDSRSSFALIIR----------GGCHFDEKVRNAQNAGFKAAIMYDNEDHPLVF---AIGGSPDGITIPAVFVSKASGEALRKYAGLTDMELWILPRTKNLEWFIMAIS-----FISLLATVIGLAVC-----------LFVHRQHGRHERSRASEIHGMSSRLVEAMPSLIFISASED---NCTSQTCAICLEDYKVGEKLRRLPCHHKFHAVCVDSWL--------TAWR----SFCPMCKQDCNSSTIYIPASESTPLLSSISSFPSSSARSL 277          
BLAST of jgi.p|Trimin1|353190 vs. uniprot
Match: A0A430Q2G7_SCHBO (E3 ubiquitin-protein ligase RNF13 n=3 Tax=Schistosoma TaxID=6181 RepID=A0A430Q2G7_SCHBO)

HSP 1 Score: 83.2 bits (204), Expect = 2.350e-13
Identity = 76/264 (28.79%), Postives = 118/264 (44.70%), Query Frame = 1
Query:  190 IFGCNPLDFTLDEAVGKTD-----MPVVALISRSLQSNMAKDPGSCTFAQKVDNAWRAGAALAVVFDYVDEPLFRMQRATGGPVDSAKIPSVLISASSGRVLHALATACADPLGPRVFVDASDPYEKMFESLNMTMIGVVCGFLTSLLACASLFLCTSHRLLRRYDAIGGHGRPPRPL-SLAQALRMPEKSVTCGCGLEKDSCAICLEAYRVGDKVMHLNCGHVLHAHCLRPWLAVSIAGIATAQRPERQRTCPLCKGDVTDPP 963
            I+   PL   +D+     D     +P ++LI R          G C+F  K   A R G    V+F+ VD+  F M   +   V    IP V++  S G++L  L   C     P  FV+    + +   S+ + +I ++   L S++A   L +    RLL RY     +  P + L  + + L + + S       E ++CAICLE Y+ GDK+  L CGH  H+ C+ PWL             +R+  CP+CK  V + P
Sbjct:   56 IYASKPLKGCVDQIPKPKDDHNSTLPYISLIKR----------GDCSFVDKALAAERGGYIATVIFNDVDDSTFPMGYNSSTNVS---IPVVMVGLSDGKLL--LDKYCV----PHYFVEILPAHRR---SIVLYLIPLITCLLISVVA---LSVAYGIRLLNRYRRRYRYCLPVKELRKIPETLFVKDSS-------EFETCAICLEDYKDGDKLRVLPCGHAYHSKCVDPWLL------------KRRGFCPICKKKVRNRP 275          
BLAST of jgi.p|Trimin1|353190 vs. uniprot
Match: A0A6J0ML59_RAPSA (receptor homology region, transmembrane domain- and RING domain-containing protein 4-like n=2 Tax=Raphanus sativus TaxID=3726 RepID=A0A6J0ML59_RAPSA)

HSP 1 Score: 82.4 bits (202), Expect = 3.840e-13
Identity = 106/367 (28.88%), Postives = 148/367 (40.33%), Query Frame = 1
Query:   64 LLLVPGTAQAV---------LSAFDKQGAYTGMCILLQHGIAGRLRVATPDIFGCNPLDFTLD-EAVGKTDMPVVALISRSLQSNMAKDPGSCTFAQKVDNAWRAGAALAVVFDYVDEPLFRMQRATGGPVDSAKIPSVLISASSGRVLHALA--TACADPLGPRVFVDASDPYEKMFESLNMTMIGVVCGFLTSLLACASLFLCTSHRLLRRYDAIGGHGRPPRPLSLAQALRMPEK--SVTCGCGLEKDSCAICLEAYRVGDKVMHLNCGHVLHAHCLRPWLAVSIAGIATAQRPERQRTCPLCKGDVT----DPPPTPS----LSRPSSLQGSSIRLVPSPVQPAHDTSRAAPPDAAARHDDSG 1098
            LLL+P  A A          LS  D +  +T M  + +    G L VA P +  C+ L  T+     G    P   LI R          G C+F +K+ NA +AG   A+V++  D   F +  A G P     I    +S S+G +L   A  T     L P     A       F SL + M  V+          A+ F    HR+ RR   + G G   R + +    RMP    +  C       SC IC+E YR+G+K+  L C H  HA C+  WL             +R+  CP+CK D      + PP+PS    L  PS    SS  L  SP   +  +S   PP ++     +G
Sbjct:   11 LLLIPHLASAKIMLIGKNTSLSFDDIEADFTPM--IKKSDQCGVLYVAEP-LDACSDLVNTVSIPEEGSITSPSYVLIIR----------GGCSFEEKIRNAQKAGYKAAIVYNNEDYGFFLISMA-GNP-SGVVIYGTFVSKSTGEILKGYAGRTDMELWLAPSFETSAWSIMAISFISL-LAMSAVL----------ATCFFVRRHRIRRRRVRLMGGGEFAR-MGIDSIRRMPTTVFNGVCEEASTSISCVICIEDYRIGEKLRILPCNHKFHAKCVDLWLG------------QRRSFCPVCKRDARTININMPPSPSERTPLLSPSVTPTSSFLLSSSPSTSSVQSSYDIPPSSSTMQLQTG 338          
BLAST of jgi.p|Trimin1|353190 vs. uniprot
Match: A0A7C9AUE2_OPUST (RING-type domain-containing protein n=1 Tax=Opuntia streptacantha TaxID=393608 RepID=A0A7C9AUE2_OPUST)

HSP 1 Score: 82.4 bits (202), Expect = 4.080e-13
Identity = 95/306 (31.05%), Postives = 130/306 (42.48%), Query Frame = 1
Query:  154 GIAGRLRVATPDIFGCNPLDFTLDEAVGKTDMPVVALISRSLQSNMAKDPGSCTFAQKVDNAWRAGAALAVVFDYVDE-PLFRMQRATGGPVDSAKIPSVLISASSGRVLHALATACADPLGPRVFVDASDPYEKMFESLNMTMIGVVCGFLTSLLACASLFLCTSHRLLR-RYDAIGGHGRPPRPLSLAQALRMPEKSVTCGC--GLEKDSCAICLEAYRVGDKVMHLNCGHVLHAHCLRPWLAV---------SIAGIATAQRPERQRTCPLCKGDVTDPPPTPSLSRPSSLQGSSIRLV-PSP 1029
            GI G+L +A P +  C+PL   +++          ALI R          G C F  KV  A +AG   A+V+D VD  PL  M  ++ G     KI +V +S +SG  L + A      LG  V++  S  YE    S+      +   F++ L   A L  C   R  R R +   G  R    +S      MP    T          +CAICLE YRVGDK+  L C H  HA C+  WL             A  +T + P  + T PL   + +    TP  S  SS+  S+I +  PSP
Sbjct:   54 GICGKLYIAEP-LDACSPLMNKIEQNNSGNCTSPFALIIR----------GVCGFEDKVRRAQKAGFETAIVYDNVDNSPLVAMAGSSAG----IKIHAVFVSKASGERLKSNAG-----LGAEVWIIPS--YENSAWSI------MAISFISLLAMSAVLATCFFVRRNRIRRERPQGRVREFHGMSSCLVKAMPSLIFTAVTDDNCTSSTCAICLEDYRVGDKLRILPCSHKFHAFCVDSWLTTWRTFCPVCKRDARTSTGEPPASEST-PLLSSNPSSAASTPFSSFRSSVHSSAIPIASPSP 330          
BLAST of jgi.p|Trimin1|353190 vs. uniprot
Match: D7LXA5_ARALL (Peptidase/ protein binding protein n=1 Tax=Arabidopsis lyrata subsp. lyrata TaxID=81972 RepID=D7LXA5_ARALL)

HSP 1 Score: 80.5 bits (197), Expect = 1.700e-12
Identity = 97/346 (28.03%), Postives = 150/346 (43.35%), Query Frame = 1
Query:   55 ARLLLLVPGTAQAVLSAFDKQGAYTGMCILLQHGIAGRLRVATPDIFGCNPLDFTLDEAVGKTDMPVVALISRSLQSNMAKDPGSCTFAQKVDNAWRAGAALAVVFDYVDEPLFRMQRATGGPVDSAKIPSVLISASSGRVLHALATACADPLGPRVFVDASDPYEKMFESLNMTMIGVVCGFLTSLLACASLFLC---TSHRLLRRYD-AIGGHGRPPRPLSLAQALRMPEKSVTCGCGLEKDSCAICLEAYRVGDKVMHLNCGHVLHAHCLRPWLAVSIAGIATAQRPERQRTCPLCKGDVT----DPPP---TPSLSRPSSLQGSSIRLVPS----PVQPAHD 1047
            A++LL+   T+   LS  D +  +T M      G  G L VA P +  C+ L  T++   G +  P   LI R          G C+F +K+ NA +AG   A+V+DY D   +    +  G      I    +S ++G VL    T  A      V++  S      FE+   +++ +   F++ L   A L  C     HR+ RR   A+ G+  P    ++ + +        C       SCAIC+E YR+GDK+  L C H  H  C+  WL             +R+  CP+CK D      D P    TP L+  +S+  +S  L+ S    P+Q +H+
Sbjct:   20 AKILLIGKNTS---LSFDDIEANFTPMIKRSDQG--GVLYVAEP-LDACSDLVNTVNVKNGSSVPPPYVLIIR----------GGCSFEEKIRNAQKAGYKAAIVYDYED---YGFLVSMAGNPSGVLIYGTFVSKATGEVL----TQYAGRTDFEVWLMPS------FETSAWSIMAI--SFISLLAMSAVLATCFFVRRHRVRRRRILALNGNDFPRMAKNMLKRMPTTIFKGVCDEASTSISCAICIEDYRIGDKLRILPCHHKFHVGCVDLWLG------------QRRSFCPVCKRDARSISIDMPASEHTPLLTPSNSMTPTSSFLLSSSSTTPLQSSHE 322          
BLAST of jgi.p|Trimin1|353190 vs. uniprot
Match: A0A835Z965_9STRA (Rab1A, rab family GTPase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z965_9STRA)

HSP 1 Score: 393 bits (1009), Expect = 6.270e-138
Identity = 206/206 (100.00%), Postives = 206/206 (100.00%), Query Frame = 3
Query:   12 MSKRDYDHLFKLVLIGDSGVGKSCLLLRFADDAFTDSYISTIGVDFRFRTVKIDKKTVKLQIWDTAGQERFRTITSAYYRGADGIIMVYDVTSQESFGHVNDWLSEVNRYASEGTSKLLIGNKSDRADKAVTTEQAKSFAQSLGIPFLETSAKSASNVEEAFLTMASELIRTREARAAQQAESSGTAATVQLRPGASGGGSSGKCC 629
            MSKRDYDHLFKLVLIGDSGVGKSCLLLRFADDAFTDSYISTIGVDFRFRTVKIDKKTVKLQIWDTAGQERFRTITSAYYRGADGIIMVYDVTSQESFGHVNDWLSEVNRYASEGTSKLLIGNKSDRADKAVTTEQAKSFAQSLGIPFLETSAKSASNVEEAFLTMASELIRTREARAAQQAESSGTAATVQLRPGASGGGSSGKCC
Sbjct:    1 MSKRDYDHLFKLVLIGDSGVGKSCLLLRFADDAFTDSYISTIGVDFRFRTVKIDKKTVKLQIWDTAGQERFRTITSAYYRGADGIIMVYDVTSQESFGHVNDWLSEVNRYASEGTSKLLIGNKSDRADKAVTTEQAKSFAQSLGIPFLETSAKSASNVEEAFLTMASELIRTREARAAQQAESSGTAATVQLRPGASGGGSSGKCC 206          
BLAST of jgi.p|Trimin1|353190 vs. uniprot
Match: D7G118_ECTSI (Rab1A, RAB family GTPase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G118_ECTSI)

HSP 1 Score: 324 bits (831), Expect = 7.280e-111
Identity = 168/184 (91.30%), Postives = 174/184 (94.57%), Query Frame = 3
Query:   12 MSKRDYDHLFKLVLIGDSGVGKSCLLLRFADDAFTDSYISTIGVDFRFRTVKIDKKTVKLQIWDTAGQERFRTITSAYYRGADGIIMVYDVTSQESFGHVNDWLSEVNRYASEGTSKLLIGNKSDRADKAVTTEQAKSFAQSLGIPFLETSAKSASNVEEAFLTMASELIRTREARAAQQAESS 563
            MSKRDYDHLFKLVLIGDSGVGKSCLLLRFADDAFTDSYISTIGVDFRFRTVKIDKKTVKLQIWDTAGQERFRTITSAYYRGADGIIMVYDVT QESF HVNDWLSEVNRYASEGTSKLLIGNKSDR DK V +  AK +A+SLGIPFLETSAK+ASNVEEAFLTMASELIRTREARAA Q ++S
Sbjct:    1 MSKRDYDHLFKLVLIGDSGVGKSCLLLRFADDAFTDSYISTIGVDFRFRTVKIDKKTVKLQIWDTAGQERFRTITSAYYRGADGIIMVYDVTGQESFDHVNDWLSEVNRYASEGTSKLLIGNKSDREDKVVDSAAAKEYAESLGIPFLETSAKNASNVEEAFLTMASELIRTREARAATQVDNS 184          
BLAST of jgi.p|Trimin1|353190 vs. uniprot
Match: W7TI50_9STRA (Rab1 family protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TI50_9STRA)

HSP 1 Score: 305 bits (781), Expect = 4.090e-103
Identity = 155/178 (87.08%), Postives = 165/178 (92.70%), Query Frame = 3
Query:   12 MSKRDYDHLFKLVLIGDSGVGKSCLLLRFADDAFTDSYISTIGVDFRFRTVKIDKKTVKLQIWDTAGQERFRTITSAYYRGADGIIMVYDVTSQESFGHVNDWLSEVNRYASEGTSKLLIGNKSDRADKAVTTEQAKSFAQSLGIPFLETSAKSASNVEEAFLTMASELIRTREARAA 545
            MSKRDYD LFKLVLIGD+GVGKSCLLLRFADDAFTDSYISTIGVDFRFRTVKIDKKT KLQIWDTAGQERFRTITSAYYRGADGIIMVYDVT++ESF H+ DWL+EVNRYASEGT KLL+GNKSDR DK V+TE+AK FA  LGIPFLETSAK+ASNVEEAFLTMA ELIR REA+ A
Sbjct:    1 MSKRDYDFLFKLVLIGDTGVGKSCLLLRFADDAFTDSYISTIGVDFRFRTVKIDKKTFKLQIWDTAGQERFRTITSAYYRGADGIIMVYDVTNEESFEHIQDWLNEVNRYASEGTCKLLVGNKSDRPDKVVSTERAKKFADELGIPFLETSAKNASNVEEAFLTMAQELIRLREAKGA 178          
BLAST of jgi.p|Trimin1|353190 vs. uniprot
Match: A0A7S3VAP6_9STRA (Hypothetical protein n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3VAP6_9STRA)

HSP 1 Score: 301 bits (770), Expect = 1.870e-101
Identity = 162/205 (79.02%), Postives = 171/205 (83.41%), Query Frame = 3
Query:   18 KRDYDHLFKLVLIGDSGVGKSCLLLRFADDAFTDSYISTIGVDFRFRTVKIDKKTVKLQIWDTAGQERFRTITSAYYRGADGIIMVYDVTSQESFGHVNDWLSEVNRYASEGTSKLLIGNKSDRA-DKAVTTEQAKSFAQSLGIPFLETSAKSASNVEEAFLTMASELIRTREARAAQQAESSGTAATVQLRPGASGGGSSGKCC 629
            K DYD+LFKLVLIGDSGVGKSCLLLRFADDAFT+SYISTIGVDFRFRTVKIDKKTVKLQIWDTAGQERFRTITSAYYRGADGIIMVYDVTSQ+SF HVNDWL EVNRYASEGT KLL+GNKSDR  DK VT EQAK FA  +GIPFLETSAKSA+NVEEAFLTMASELI+ R AR     ++ G    VQL  G         CC
Sbjct:    8 KSDYDYLFKLVLIGDSGVGKSCLLLRFADDAFTESYISTIGVDFRFRTVKIDKKTVKLQIWDTAGQERFRTITSAYYRGADGIIMVYDVTSQDSFDHVNDWLKEVNRYASEGTCKLLVGNKSDRTTDKVVTAEQAKEFADDIGIPFLETSAKSAANVEEAFLTMASELIKQRIARGGTAEDADGD--NVQLGGGKRAKEMMSNCC 210          
BLAST of jgi.p|Trimin1|353190 vs. uniprot
Match: F0YFR6_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YFR6_AURAN)

HSP 1 Score: 300 bits (768), Expect = 3.060e-101
Identity = 161/207 (77.78%), Postives = 179/207 (86.47%), Query Frame = 3
Query:   12 MSKRDYDHLFKLVLIGDSGVGKSCLLLRFADDAFTDSYISTIGVDFRFRTVKIDKKTVKLQIWDTAGQERFRTITSAYYRGADGIIMVYDVTSQESFGHVNDWLSEVNRYASEGTSKLLIGNKSDRADKAVTTEQAKSFAQSLGIPFLETSAKSASNVEEAFLTMASELIRTREARAAQQAE-SSGTAATVQLRPGASGGGSSGKCC 629
            MSKRDYDHLFKLVLIGD+GVGKSCLLLRFADDAFT+SYISTIGVDFRFRTVK+D KTVKLQIWDTAGQERFRTITSAYYRGADGIIMVYDVTS ESF HV+DWL+EVNRYA+EGT KLL+GNK D  DK VTTE AK +A  LGIPFLETSAK+A+NVEEAFLTMA ELIR REA  +Q A+  +G A+ ++L  G+S    + KCC
Sbjct:    1 MSKRDYDHLFKLVLIGDTGVGKSCLLLRFADDAFTESYISTIGVDFRFRTVKVDGKTVKLQIWDTAGQERFRTITSAYYRGADGIIMVYDVTSSESFDHVSDWLTEVNRYANEGTCKLLVGNKCDMEDKVVTTEAAKEYADGLGIPFLETSAKNATNVEEAFLTMAGELIRLREA--SQSAKPGAGGASGLKLSGGSS---RTKKCC 202          
BLAST of jgi.p|Trimin1|353190 vs. uniprot
Match: A0A7S2C3M2_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2C3M2_9STRA)

HSP 1 Score: 298 bits (764), Expect = 1.380e-100
Identity = 149/175 (85.14%), Postives = 166/175 (94.86%), Query Frame = 3
Query:   15 SKRDYDHLFKLVLIGDSGVGKSCLLLRFADDAFTDSYISTIGVDFRFRTVKIDKKTVKLQIWDTAGQERFRTITSAYYRGADGIIMVYDVTSQESFGHVNDWLSEVNRYASEGTSKLLIGNKSDRADKAVTTEQAKSFAQSLGIPFLETSAKSASNVEEAFLTMASELIRTREAR 539
            +KRDYDHLFKLVLIGDSGVGKSCLLLRFAD+AFT+SYISTIGVDFRFRT+K++K TVKLQIWDTAGQERFRTITSAYYRGADGIIMVYDVTSQESF HV+DWL+EVNRYASEGT KLL+GNKSDRAD AV++E+AK +A+ LGIPFLETSAK+A NVE AFLTMASELI+ R+AR
Sbjct:    8 TKRDYDHLFKLVLIGDSGVGKSCLLLRFADNAFTESYISTIGVDFRFRTIKVEKNTVKLQIWDTAGQERFRTITSAYYRGADGIIMVYDVTSQESFNHVSDWLTEVNRYASEGTCKLLVGNKSDRADWAVSSEEAKVYAEKLGIPFLETSAKNAENVETAFLTMASELIKIRQAR 182          
BLAST of jgi.p|Trimin1|353190 vs. uniprot
Match: A0A7S1GR15_CYCTE (Hypothetical protein n=2 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1GR15_CYCTE)

HSP 1 Score: 296 bits (759), Expect = 9.140e-100
Identity = 154/175 (88.00%), Postives = 161/175 (92.00%), Query Frame = 3
Query:   18 KRDYDHLFKLVLIGDSGVGKSCLLLRFADDAFTDSYISTIGVDFRFRTVKIDKKTVKLQIWDTAGQERFRTITSAYYRGADGIIMVYDVTSQESFGHVNDWLSEVNRYASEGTSKLLIGNKSDR-ADKAVTTEQAKSFAQSLGIPFLETSAKSASNVEEAFLTMASELIRTREAR 539
            +RDYD+LFKLVLIGDSGVGKSCLLLRFADDAFT+SYISTIGVDFRFRTVKIDKKTVKLQIWDTAGQERFRTITSAYYRGADGIIMVYDVTS ESF HVNDWL EVNRYA+EGT KLL+GNKSDR ADK VT E+AK FA  LGI FLETSAKSA NVEEAFLTMA ELIR R+AR
Sbjct:   12 QRDYDYLFKLVLIGDSGVGKSCLLLRFADDAFTESYISTIGVDFRFRTVKIDKKTVKLQIWDTAGQERFRTITSAYYRGADGIIMVYDVTSSESFDHVNDWLKEVNRYAAEGTVKLLVGNKSDRVADKVVTEEKAKEFADELGIAFLETSAKSAKNVEEAFLTMAGELIRQRDAR 186          
BLAST of jgi.p|Trimin1|353190 vs. uniprot
Match: B7FVL6_PHATC (Predicted protein n=5 Tax=Bacillariophycidae TaxID=33850 RepID=B7FVL6_PHATC)

HSP 1 Score: 295 bits (755), Expect = 3.350e-99
Identity = 152/177 (85.88%), Postives = 163/177 (92.09%), Query Frame = 3
Query:   18 KRDYDHLFKLVLIGDSGVGKSCLLLRFADDAFTDSYISTIGVDFRFRTVKIDKKTVKLQIWDTAGQERFRTITSAYYRGADGIIMVYDVTSQESFGHVNDWLSEVNRYASEGTSKLLIGNKSDR-ADKAVTTEQAKSFAQSLGIPFLETSAKSASNVEEAFLTMASELIRTREARAA 545
            +RDYD+LFKLVLIGDSGVGKSCLLLRFADDAFT+SYISTIGVDFRFRTVKIDKKTVKLQIWDTAGQERFRTITSAYYRGADGIIMV+DVTS +SF HVNDWL EVNRYA+EGT KLL+GNKSDR AD+ VT EQA+ FA  LGIPF+ETSAKSA NVEEAFLTMA ELIR R AR+A
Sbjct:    9 QRDYDYLFKLVLIGDSGVGKSCLLLRFADDAFTESYISTIGVDFRFRTVKIDKKTVKLQIWDTAGQERFRTITSAYYRGADGIIMVFDVTSTDSFDHVNDWLKEVNRYAAEGTVKLLVGNKSDRTADRVVTEEQAREFADELGIPFIETSAKSAKNVEEAFLTMAGELIRQRAARSA 185          
BLAST of jgi.p|Trimin1|353190 vs. uniprot
Match: A0A7S4JIY9_9STRA (Hypothetical protein n=2 Tax=Eupodiscales TaxID=33838 RepID=A0A7S4JIY9_9STRA)

HSP 1 Score: 295 bits (755), Expect = 1.270e-98
Identity = 153/176 (86.93%), Postives = 161/176 (91.48%), Query Frame = 3
Query:   15 SKRDYDHLFKLVLIGDSGVGKSCLLLRFADDAFTDSYISTIGVDFRFRTVKIDKKTVKLQIWDTAGQERFRTITSAYYRGADGIIMVYDVTSQESFGHVNDWLSEVNRYASEGTSKLLIGNKSDR-ADKAVTTEQAKSFAQSLGIPFLETSAKSASNVEEAFLTMASELIRTREAR 539
            +KRDYD+LFKLVLIGDSGVGKSCLLLRFADDAFT+SYISTIGVDFRFRTVKIDKKTVKLQIWDTAGQERFRTITSAYYRGADGII+VYDVTS +SF HVNDWL EVNRYASEGT KLLIGNKSDR +DK V  E+AK FA  LGI FLETSAKSA NVEEAFLTMA ELI+ REAR
Sbjct:   45 NKRDYDYLFKLVLIGDSGVGKSCLLLRFADDAFTESYISTIGVDFRFRTVKIDKKTVKLQIWDTAGQERFRTITSAYYRGADGIILVYDVTSADSFDHVNDWLKEVNRYASEGTCKLLIGNKSDRTSDKVVAAEKAKEFADELGIAFLETSAKSAKNVEEAFLTMAGELIKQREAR 220          
BLAST of jgi.p|Trimin1|353190 vs. uniprot
Match: A0A1Z5J904_FISSO (Uncharacterized protein n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5J904_FISSO)

HSP 1 Score: 293 bits (751), Expect = 1.360e-98
Identity = 152/184 (82.61%), Postives = 164/184 (89.13%), Query Frame = 3
Query:   18 KRDYDHLFKLVLIGDSGVGKSCLLLRFADDAFTDSYISTIGVDFRFRTVKIDKKTVKLQIWDTAGQERFRTITSAYYRGADGIIMVYDVTSQESFGHVNDWLSEVNRYASEGTSKLLIGNKSDR-ADKAVTTEQAKSFAQSLGIPFLETSAKSASNVEEAFLTMASELIRTREARAAQQAESSG 566
            +RDYD+LFKLVLIGDSGVGKSCLLLRFADDAFT+SYISTIGVDFRFRTVK+DKKTVKLQIWDTAGQERFRTITSAYYRGADGIIMV+DVTS ESF HVNDWL EVNRYA+EGT KLL+GNKSDR AD+ VTTEQA+ FA  LGIP++ETSAKSA NVEEAFLTMA ELIR R A    + E  G
Sbjct:    9 QRDYDYLFKLVLIGDSGVGKSCLLLRFADDAFTESYISTIGVDFRFRTVKLDKKTVKLQIWDTAGQERFRTITSAYYRGADGIIMVFDVTSTESFDHVNDWLKEVNRYAAEGTVKLLVGNKSDRTADRVVTTEQAQEFAAELGIPYIETSAKSAKNVEEAFLTMAGELIRQRVASGTDKDEKKG 192          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|353190 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835Z7P9_9STRA6.160e-272100.00RING-type domain-containing protein n=1 Tax=Tribon... [more]
A0A6H5L263_9PHAE3.390e-5240.47RING-type domain-containing protein n=2 Tax=Ectoca... [more]
A0A836C717_9STRA4.340e-4134.56RING-type domain-containing protein n=1 Tax=Tribon... [more]
A0A0K9RHC9_SPIOL3.490e-1430.79RING-type domain-containing protein n=2 Tax=Spinac... [more]
A0A4Z2DTX1_SCHJA1.020e-1327.15E3 ubiquitin-protein ligase RNF13 isoform 2 n=3 Ta... [more]
A0A8B9ARK4_PHODC1.690e-1331.06receptor homology region, transmembrane domain- an... [more]
A0A430Q2G7_SCHBO2.350e-1328.79E3 ubiquitin-protein ligase RNF13 n=3 Tax=Schistos... [more]
A0A6J0ML59_RAPSA3.840e-1328.88receptor homology region, transmembrane domain- an... [more]
A0A7C9AUE2_OPUST4.080e-1331.05RING-type domain-containing protein n=1 Tax=Opunti... [more]
D7LXA5_ARALL1.700e-1228.03Peptidase/ protein binding protein n=1 Tax=Arabido... [more]

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BLAST of jgi.p|Trimin1|353190 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835Z965_9STRA6.270e-138100.00Rab1A, rab family GTPase n=1 Tax=Tribonema minus T... [more]
D7G118_ECTSI7.280e-11191.30Rab1A, RAB family GTPase n=2 Tax=Ectocarpus TaxID=... [more]
W7TI50_9STRA4.090e-10387.08Rab1 family protein n=2 Tax=Monodopsidaceae TaxID=... [more]
A0A7S3VAP6_9STRA1.870e-10179.02Hypothetical protein n=1 Tax=Chaetoceros debilis T... [more]
F0YFR6_AURAN3.060e-10177.78Uncharacterized protein n=1 Tax=Aureococcus anopha... [more]
A0A7S2C3M2_9STRA1.380e-10085.14Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A7S1GR15_CYCTE9.140e-10088.00Hypothetical protein n=2 Tax=Cyclophora tenuis Tax... [more]
B7FVL6_PHATC3.350e-9985.88Predicted protein n=5 Tax=Bacillariophycidae TaxID... [more]
A0A7S4JIY9_9STRA1.270e-9886.93Hypothetical protein n=2 Tax=Eupodiscales TaxID=33... [more]
A0A1Z5J904_FISSO1.360e-9882.61Uncharacterized protein n=2 Tax=Fistulifera solari... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_148contigContig_148:203583..211029 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|353190|estExt_Genemark1.C_Ctg_1480028
BRITEko00000,ko01000,ko04121
KEGG koko:K15692,ko:K15706
EC2.3.2.27
Descriptionprotein modification by small protein conjugation or removal
COG categoryO
Max annot lvl2759|Eukaryota
EggNOG OGsKOG4628@1|root,KOG4628@2759|Eukaryota
Evalue7.91e-53
Seed ortholog2880.D7FRI5
Hectar predicted targeting categorysignal peptide
TranscriptId353512
TrackFilteredModels1
ProteinId353190
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|353190gene_14546Tribonema minus UTEX_B_3156 geneContig_148 203583..211029 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|353190Trimin1|353190|estExt_Genemark1.C_Ctg_1480028Tribonema minus UTEX_B_3156 polypeptideContig_148 204019..211029 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_14546_11exon_14546_11Tribonema minus UTEX_B_3156 exonContig_148 203583..204034 -
exon_14546_10exon_14546_10Tribonema minus UTEX_B_3156 exonContig_148 204835..204956 -
exon_14546_9exon_14546_9Tribonema minus UTEX_B_3156 exonContig_148 205446..205531 -
exon_14546_8exon_14546_8Tribonema minus UTEX_B_3156 exonContig_148 205598..205633 -
exon_14546_7exon_14546_7Tribonema minus UTEX_B_3156 exonContig_148 206136..206236 -
exon_14546_6exon_14546_6Tribonema minus UTEX_B_3156 exonContig_148 206830..206958 -
exon_14546_5exon_14546_5Tribonema minus UTEX_B_3156 exonContig_148 208002..208129 -
exon_14546_4exon_14546_4Tribonema minus UTEX_B_3156 exonContig_148 209193..209384 -
exon_14546_3exon_14546_3Tribonema minus UTEX_B_3156 exonContig_148 210027..210200 -
exon_14546_2exon_14546_2Tribonema minus UTEX_B_3156 exonContig_148 210772..210900 -
exon_14546_1exon_14546_1Tribonema minus UTEX_B_3156 exonContig_148 211006..211029 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR3_14546UTR3_14546Tribonema minus UTEX_B_3156 three_prime_UTRContig_148 203583..204018 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_14546CDS_14546Tribonema minus UTEX_B_3156 CDSContig_148 211006..211029 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_14546 ID=mRNA_14546|Name=jgi.p|Trimin1|353190|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1573bp|location=Sequence derived from alignment at Contig_148:203583..211029- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGGTGGCGCTTGCGTGCGTGTGCGCGGAGAGCGCCATGGTGGCGCTGTG
GAGGGCGCGGCTACTCCTGCTGGTGCCCGGCACAGCGCAAGCGGTGCTGA
GCGCGTTCGACAAGCAAGGGGCTTACACAGGCATGTGTATCCTGCTGCAG
CATGGCATCGCAGGACGCTTGCGAGTCGCAACGCCGGACATATTCGGCTG
CAACCCACTGGACTTCACCCTGGATGAAGCTGTGGGGAAAACCGACATGC
CCGTGGTAGCTCTGATATCGCGCAGCCTGCAAAGCAACATGGCGAAGGAC
CCCGGGTCCTGCACATTCGCGCAGAAGGTCGACAACGCGTGGCGCGCGGG
CGCGGCGCTCGCGGTCGTCTTTGACTACGTGGACGAGCCGCTCTTCCGCA
TGCAGCGCGCGACCGGCGGGCCCGTGGACAGCGCCAAGATACCGTCCGTG
CTCATCTCGGCCAGCAGCGGCCGCGTCCTGCACGCGCTCGCGACCGCGTG
CGCGGACCCGCTGGGACCGCGAGTATTCGTTGATGCATCCGACCCCTACG
AGAAGATGTTTGAGAGCCTCAACATGACCATGATAGGTGTAGTGTGCGGC
TTTTTGACATCGCTGCTGGCGTGCGCGAGCCTGTTCCTCTGCACCAGCCA
CCGCCTGCTGCGGCGCTACGATGCCATCGGCGGGCACGGCCGGCCGCCGC
GCCCGCTGTCCCTGGCGCAGGCGCTGCGCATGCCCGAGAAGAGCGTCACG
TGCGGCTGCGGCCTTGAGAAGGACAGCTGCGCCATCTGCCTGGAGGCGTA
CCGCGTGGGCGACAAAGTGATGCATTTGAACTGCGGGCACGTGCTCCATG
CCCACTGCCTGCGGCCGTGGCTTGCAGTCTCCATCGCCGGCATCGCAACC
GCGCAGCGCCCAGAGCGGCAACGCACCTGCCCGCTGTGCAAGGGCGACGT
CACGGACCCGCCGCCCACGCCGTCGCTGTCGCGGCCCTCGAGCCTGCAGG
GCTCGAGCATACGCCTGGTGCCGTCACCAGTGCAGCCCGCCCACGATACG
AGCAGGGCAGCGCCGCCGGACGCCGCCGCACGCCATGATGACAGCGGCGG
CATTGCCGTGGAGGAGGGGCTGAGGCAGGGCATGTGACATGCGCAAGGCA
GCCCATCCCACCCACATGTATGCAAGAGCCTAGGTTTGAAGTGCGATACG
GCGCCAGCTGCACCGTGCGCTGCTGCCGTGGAGCGCCGTGTATATAAAGC
AACGCTGCTGATAGTATTCTACACCCCCGACAAGCGCCGCTGCCGAATGG
CCGCACGTTCCGTACATACATGCCTCCATCTGTGATGCTCACTGCGGCGT
AAAGGCCCCCATTGTCCGCTCCCCTCCATGCTGCTGCGGTCCACAGCCAT
GCCTACCCCTTAGCTAGGCTCCTGTCTGCATGTTGATGCACCGTTACCGC
TCTGGAGTTGAAGTGGCGGCAGCCGTTGAAAAGGCTTCAGGTAACCGCCA
CCCAGCGCAAGTCTCTCGCTGCTGTTTAGTGGCAACCACGCCCGGCACGT
AATAGATGGATTTTGACACTTCT
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protein sequence of jgi.p|Trimin1|353190

>Trimin1|353190|estExt_Genemark1.C_Ctg_1480028 ID=Trimin1|353190|estExt_Genemark1.C_Ctg_1480028|Name=jgi.p|Trimin1|353190|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=379bp
MVALACVCAESAMVALWRARLLLLVPGTAQAVLSAFDKQGAYTGMCILLQ
HGIAGRLRVATPDIFGCNPLDFTLDEAVGKTDMPVVALISRSLQSNMAKD
PGSCTFAQKVDNAWRAGAALAVVFDYVDEPLFRMQRATGGPVDSAKIPSV
LISASSGRVLHALATACADPLGPRVFVDASDPYEKMFESLNMTMIGVVCG
FLTSLLACASLFLCTSHRLLRRYDAIGGHGRPPRPLSLAQALRMPEKSVT
CGCGLEKDSCAICLEAYRVGDKVMHLNCGHVLHAHCLRPWLAVSIAGIAT
AQRPERQRTCPLCKGDVTDPPPTPSLSRPSSLQGSSIRLVPSPVQPAHDT
SRAAPPDAAARHDDSGGIAVEEGLRQGM*
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mRNA from alignment at Contig_148:203583..211029-

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_14546 ID=mRNA_14546|Name=jgi.p|Trimin1|353190|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=7447bp|location=Sequence derived from alignment at Contig_148:203583..211029- (Tribonema minus UTEX_B_3156 )
ATGGTGGCGCTTGCGTGCGTGTGCGTGCGTGCAACTATATCGTTTGGATA TCCGAAAAGAAAAAAAAAGTGGAGTTCAAAACGTGAAGTGAAGTTGAGTC TTTGTAGAGGACTTTCCTTGTGCACCGAGGCGGAGAGCGCCATGGTGGCG CTGTGGAGGGCGCGGCTACTCCTGCTGGTGCCCGGCACAGCGCAAGCGGT GCTGAGCGCGTTCGACAAGCAAGGGGCTTACACAGGCATGTGTATCCTGC TGCAGCATGTGTGCAGGCTCCGCGCTGACATCTCTGATGTTACGTGCAAA TAACATTGTTTGTCGGCATCTGGCAGTATTGCATAGCGCACTACTTTTGT GGCGGCGACTAGCAGTCAAGACCCAGTCTCATGAACTTGCCCCCTCGTTG GGCCCCCTTCGTTCTGCTGCAGAGATTATTACGGTGCCAGCAGCAGCGAA TTTTGGGCCCCGAATACCGCCCAGGGTAAGTGACGCATGCAGTACTCGCC GCTGACTTTGTTGCTCGCTCACGGTGAAGCTGTTCTCTGTGAGGCCAACT GCGCTCTTGCTTCCGCAACAACTGTCTGTCCCTAGCTTCTGTTCACACCT GCCTGCAGCCACCGCATGATCTCTGCGCATCATCAAGTCTACACTGCGCA GAGCTGACGCACACTCACCGACCGCTGGAGCAGTACCTGGCTCCATCTGC AAGATGCGCAGCGCTACCATTCATCGGGAGCGGAAGACCGACCGTTTGAC CTTCTTCCTTCCTCATCGCACATTTGACCTTCTTCCTTCCTCATCGCACA TTGGCGGCCCACCTCTGTTGCTGCCGCAGGGCATCGCAGGACGCTTGCGA GTCGCAACGCCGGACATATTCGGCTGCAACCCACTGGACTTCACCCTGGA TGAAGCTGTGGGGAAAACCGACATGCCCGTGGTAGCTCTGATATCGCGCA GCCTGCAAAGCAACATGGCGAAGGACCCCGGGTCCTGCACATTCGCGCAG AAGGTAAGCACCGCCACAGTGCTGTGTCGCTGAGCTGCTGCAGCAGCACA CACCTTGCTTGTGGAATCAGTGTGCACCTATACCCCAGGCAGGTGCACCC AACTGGGTCTCGCAGGCCTCTGCTGATAGCATCCCGCACGTGTCATCAGC AGCGCAACACCCATGCAAGCGCCCTGTTCAACTGCCCGTGCGGCAGTTGC GCAGGACCTGTAAACGCGCAGCATGCGCGCTTGTGGTGAGCCTGACTCCA CTGCGCCGCCTTCCCTCGTACCCACTCCCATAAGCACACCTGCCTTCCAT CACCAGCACACCGACCTGAGCCCGGGAGCACACCGTGGAGGTGACGCAGT CACAATCCTTAGGAATATGCACATGCAGTTCAGAGGGGAGACAAAGGTAG ACCTGCCGCAGGCGGCCCGCAGGCGCCAGCGTAGGCGCCGCGCCAGATGC AACAACGAACAGTAGTATTTGCCAGGGAAATCAAGATAAATGTGACCATC ATGTAACGGTCATTCTCAACAGGCAGTTGCAAGTACGTCATCACGTGACA TGCAACTGATGAGCGCTGATACTGAATCAAACGCTAGAATATGAGTGAGG TCCACATTCCAACAACACACTCGATATACCCTCTGGCCGCGCCAGGTCGA CAACGCGTGGCGCGCGGGCGCGGCGCTCGCGGTCGTCTTTGACTACGTGG ACGAGCCGCTCTTCCGCATGCAGCGCGCGACCGGCGGGCCCGTGGACAGC GCCAAGATACCGTCCGTGCTCATCTCGGCCAGCAGCGGCCGCGTCCTGCA CGCGCTCGCGACCGCGTGCGCGGACCCGCTGGGACCGGTGAGCTCGCTGC TGGGCTGGCGCGGGGGGCTGTGCGTGTGGTCACATGTGTGTCGAGCGCGT GCAGTAGGTGGTGGTGCACTTGCGATGTCCGTGCATCTGCAGCATGTGCA TGGCGTGGGACTAGGGCAGGCTCAGGGTGACTGCATTTTTGGCCCACGAC TGCGACGGGTTTAAGGAGTGGTGATAGCATTATGTTATGTCAGCCTCACA AATCATGCCGCCTCCCCGTTGCATCCAATTCATTGCTTATTTGTAAGCCT TAGGGACACCAATGGGGCGCGCTGTAGAGCTGTTGCGCTTGCTTATGCAC GTGAATTCTTGCTTAGTAATAAGTTAGTATGGTATCCAATCCTTGCCATC AGGAACTTGATCTCGCTTGATAATTACAGCTGCTGGCGCCAATAGCCTAG CACTCAGCAGCAATGCGGTATGGCATATATATCATCTTGCTAGCACAGAG GTAATCGCGCGCTAAATGACGGTCTATGCAATCTGAGTCATAGCGCACAA GCTTTCAGAGACCTAACAAAGGGTGACGCCCCGTTTCTCCACTCTGAATT TCAACTAGTGCATGCGCACCGCGCGCGAACGCTCAGGCCACACAAGTAGC CATGCCTGTGACCTAGTGGTATGCTTCCCTCAGGCTGGTTTCACACTTGT TACCTGGACAAGGGACGCACGGTGCTGACTGCACTGGTCGCTCATGACAT GAGTGGCAGACTTGCGTGGAAGTGGTATGCAGCTGGCTATGGTAGAGGTG TCGCTGTCTGGCCATGCTGGTTGACTTAAGGTCACTGGAGTAACAGCCAC ATTGTAGTTTTCTTTTGTGCGACTCTGAGAGCAGTGCATTGCAACATCGG CAGGAACTCGAGCAGCAGCAAGATAACCGTTAAGCACCTCACTTTGTGCG GATATCAACAACGAAGCAGCCTGCTTCGAAATGCTTTCTCTGCCAGTTTG AACATCAGCATTGCGAGCAAGATATATACTCAAAATGTGACACTCAAAAG CCATGTGCAGCAGCTCATTGCTCCTTTGCATTTTCGTTGTCTGCATGCAG CGAGTATTCGTTGATGCATCCGACCCCTACGAGAAGATGTTTGAGAGCCT CAACATGACCATGATAGGTGTAGTGTGCGGCTTTTTGACATCGCTGCTGG CGTGCGCGAGCCTGTTCCTCTGCACCAGGTACGCGCCATCGGTCCTGAAA CGCTTTACTGCACGCTTGCAGTCTGCTGTTCAAAGTTGTACAGCTGAGAT ATTATCGAATAGCAGGGGTGGGTGCCATCATGGGCTAATGATGTGCTAAT TACTGCAAACTAGTTCTACAACCAGTGAGCTTTGGGTGGAAAGTGCCACT GGCACAACAGCCCCATCTTCGCATGCCTTTTGACATCCTCACGCTGGCCG AATGTGCCACGCTCTGCTGGCTGGCTTCCTGCGGAGCTCTTTGTGGTACC ATGTGCACTGCGGTGTCAATAGTGTCGTACAGAAAGGATGTGCAGCACGC AACAGATCCCACCATCTCTTTGCAGGGCTGTGCATGTAGCTTGTGGGGCG GCCAAGCAATCATTTGACTCGAACGCTAAAAGCGTGCACACAGAAGTCAA TTTGACTACTGTGGATATGGTGGTACTGTTTGACTCGTGGCCAATTGCTG CAGCAGCGGCGACCACGGTTATTGGTGGAAGGCATTTGCGGCTAAACATC CCTTGTCTCTGGAGCTCTACGAGCTTTTGATTCATTGTCATTTGAGTTGT GGTGGGGGGCCATGAAACACATGCATCACTGGGGGATGTCCAGATGTCCG CATAGACGCTGCTGCAGCGCCTGCTGCAGTGCGCCTCTGCCACTGGCCAA GATCGCCAGAGCCGCTGATGGCCAGAGCCAACCCCCACCTTGAGTGCGGC GCAGAGCCCATTGCATTGGTAATGACATCCGGGCCTTGGGAGCACACGCA AGTGACTGCACACAACAACACTTCTGGTAGAGTCTCGCAACCATTGTCTT GCAGCTGCAGCCGACAATCGTCAGAAACGTCCCAGAGCCTCCACACACCC ACAACCTACTCACTCCAATCCTCCCGCCTTCATGTTCGCGACAGCTGCGC GTGAGTCTGCGCAATGCACCATATGCAACCTTCGTCTAAGCCACTGCTCT ACCTGCCGCAAGATTCGCACTCGCGTACAGTTCCGACATGCAGCTGACGC TCCCCTCGCCCTGCTGCGCAGCCACCGCCTGCTGCGGCGCTACGATGCCA TCGGCGGGCACGGCCGGCCGCCGCGCCCGCTGTCCCTGGCGCAGGCGCTG CGCATGCCCGAGAAGAGCGTCACGTGCGGCTGCGGCCTTGAGAAGGACAG GTGAGGTCGACTGCACGCACGCCGCGCTGCGTGCGTCGCGCGGCAGATGC ACAGGCTGGCAGGCGTGGAGAACAGCCGCAGCTGGACGTGCTCTGGTGGC TGGCTCGCGTAGGACCCTGTTTCGCACGTCTGAGGTTTTGACTATGCGAC GCAGCCTGCTGCAAGCTTCCTGTTCTTCTAAGGTGCAGTGCAAGTGCATC CATCAGAGCGCTGCAGGAGACACAATCTGGTTTTAGTAGTGAGCCAGCGT CTATTCCTCTGTTGGTGTACAGCGGCGTGCGCAGAGTGTGCATGTGACAG AGCAGCATGCGCGTCTCGGGACCGGGCTCTTGGGTGATGCAAGTCGACGC CGGTTCCGTGCCCCACTGAAGCTCGTGCAGACAGTCCTCTCTTGTTGTGT CTTTTTCTTCACGCCCTTGCCCTGCTAGACCCTTGCCCTGATAGTCCATG TAGCGTCGCTGCCCCCCCGCCCCCTCCCCCCCCTCCCCTTCTCAGGTGGG TGCATTGTGCGAGACGGGCTGCCCCAAGACCGCCATTGACCAGACACGAT GACACCATCACATGCTCCCTCTCTGCTGACTCCGCAACCGCAGCTGCGCC ATCTGCCTGGAGGCGTACCGCGTGGGCGACAAAGTGATGCATTTGAACTG CGGGCACGTGCTCCATGCCCACTGCCTGCGGCCGTGGCTTGCAGGTGCGT AGGCGTGCTGTGTGCACGCACTGTAGCACTGGCAGATCCCACAACAGAAC CCGCCACTTCTTGATGGATGTCATAGTTGGAGTGGTGGGCTGTTGGCCTG TATTGCCGCTCGGCGTGTTGCTTGCTGCACTGACCGCATCTGATCTGCGC ACTCAGTAGAGCATATGAGTGGTGCAGATGCCTGTCATTGCTGGCAATGG CAGTAGTGAGCGGCGCCATACCGGCAGTGCAGTGCGATGCGTGCAAGTTC CTAGACATTTTCACGCTGCAAACGTGTTGACGGCGTGGCTTCTGATGCTG CATGCATCTGCAACTCGCTAAGCAGCGGCCATGCGCCGCTGCGCACAGCA AGCACGTCAGCTCTTTGCACGCAGCAGCAGCCACAGGTTTTGCACCACTG ACCAATGACGCGTGGCATGTCCTGCCAGCAAGCACAGAACTGCCATGCTG CTGCTGTCGCAGCTGTCAATGTCGTAGCTGGTGCGGTGCCGCGCAGTCTC CATCGCCGGCATCGCAACCGCGCAGCGCCCAGGTCAGGGGACATCGATGT GATGCTCGCCATTGCCCCGTCAATGCGCTGTCTGCCCTGCCGCAACAGAG CGGCAACGCACCTGCCCGCTGTGCAAGGGCGACGTCACGGACCCGCCGCC CACGCCGTCGCTGTCGCGGCCCTCGAGCCTGCAGGTACGCTGCAGCGCGG GTGCGGCTGCGCGAGCTGCGGGCCCGTGCATCTGATATCCCCTGTTCCGA AGCACCGTCAGGTGGTGCATTTTCTAGCGTGTCCGCACATGCGCGCACCA CCACTCAGTGCTGTCCCCCTGGGTCGTACTTGAAGTCTGTGTTGAAGAGA TGCGTGCACGTCTGTACGCGCAGGCCTGCCCGGCTCACCCTTGCCAGCAG CCTGTCACAGGTGGGGCCTGCGCCAGTGCACAAATGCCGCTGCGCTGCCA GGAGCTGCATGTTTGCTACTCGCGCCTGCGGCGTCGCCATAGCGTGCCTG ATGCCAAACATCGTTCTCGGAGGGGACTGATACCGTACAGATGGCTGCAG GTGTATGCAGCAAGCTGCAGCAAACTTAATTTTCCGCGAGTATCACCACG TACTTCAAGCTGGCAACAATGGGAGCCTCTGGCAATGCCGCATGCTGTCG CTGCCCGTTCGTGCTGTTCACAGGGCTCGAGCATACGCCTGGTGCCGTCA CCAGTGCAGCCCGCCCACGATACGAGCAGGGCAGCGCCGCCGGACGCCGC CGCACGCCATGATGACAGCGGCGGCATTGCCGTGGAGGAGGGGCTGTCTG CATTGCTGCCACAGAGATCGTAGCCTTAAGTAGGACAGGAGGTGAGCAGG TAGATGGCGGTGCTGGCGCTGCTCGCTGCTGGACCTGTAAGTTTGAAGTA TGTAGCTGCCAGCGCTCCTTGCATGGCAGCGGGAGCGCTGTGGCAGCGCT GTCAAGTCGGCCGTAGTGGAGCACAGCCGCCTCACGCATGTTGCTCGGCA GTAGTGTGGCGGCTTCAGAGTGGCCTGCATGTTGCTGCAGCGGCTGCCGT GCATTCCTCGGGGTTCACGCTGCGCTATGGATATTGTGAGCGTGCCGCCA TTGCCAGGAATGCATAGAAAACGTGTTGCAAGGTGGGGTGAAGAGCAGGG CAGAGAAATCGTTTTTGGTGGTCTGTTTTGCTCACGTTCGACGAGCATCG CTGATTCATTTGAGCAAGGCGTTGAAGGCATAGATAGCACGGCACATGAT ACTCACAGGAGACATTGGAAGAGTTTTTGAGGGTGAATTTGTGGGCATCT ATGGATGATGTCTTGGCAACAATTGTCTTGGAGGCTGGTCAACCATGCGT ATAGACGCAGCTGTGTGCATGTATAACTCACACGATCCTGTTTGTAGCGC GTGCGCCTGGCCGGGGCATCGCCTATCAAATATTGCCCTGACATCATCAG TGGCCGCATGCTGCCCGTATGGCGGAATGCGTGCGGCAGTCTCACATGTT GCATATGGTGCTTGGCCCGGCGTGCAGTGGCCATTTGATGCTCCAACAGC TGACAATAACCCGTTCGCTGGCTGCCTCTCCTGCTTGACCCGCAGGAGGC AGGGCATGTGACATGCGCAAGGCAGCCCATCCCACCCACATGTATGCAAG AGCCTAGGTTTGAAGTGCGATACGGCGCCAGCTGCACCGTGCGCTGCTGC CGTGGAGCGCCGTGTATATAAAGCAACGCTGCTGATAGTATTCTACACCC CCGACAAGCGCCGCTGCCGAATGGCCGCACGTTCCGTACATACATGCCTC CATCTGTGATGCTCACTGCGGCGTAAAGGCCCCCATTGTCCGCTCCCCTC CATGCTGCTGCGGTCCACAGCCATGCCTACCCCTTAGCTAGGCTCCTGTC TGCATGTTGATGCACCGTTACCGCTCTGGAGTTGAAGTGGCGGCAGCCGT TGAAAAGGCTTCAGGTAACCGCCACCCAGCGCAAGTCTCTCGCTGCTGTT TAGTGGCAACCACGCCCGGCACGTAATAGATGGATTTTGACACTTCT
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Coding sequence (CDS) from alignment at Contig_148:203583..211029-

>mRNA_14546 ID=mRNA_14546|Name=jgi.p|Trimin1|353190|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=1137bp|location=Sequence derived from alignment at Contig_148:203583..211029- (Tribonema minus UTEX_B_3156 )
ATGGTGGCGCTTGCGTGCGTGTGCGCGGAGAGCGCCATGGTGGCGCTGTG
GAGGGCGCGGCTACTCCTGCTGGTGCCCGGCACAGCGCAAGCGGTGCTGA
GCGCGTTCGACAAGCAAGGGGCTTACACAGGCATGTGTATCCTGCTGCAG
CATGGCATCGCAGGACGCTTGCGAGTCGCAACGCCGGACATATTCGGCTG
CAACCCACTGGACTTCACCCTGGATGAAGCTGTGGGGAAAACCGACATGC
CCGTGGTAGCTCTGATATCGCGCAGCCTGCAAAGCAACATGGCGAAGGAC
CCCGGGTCCTGCACATTCGCGCAGAAGGTCGACAACGCGTGGCGCGCGGG
CGCGGCGCTCGCGGTCGTCTTTGACTACGTGGACGAGCCGCTCTTCCGCA
TGCAGCGCGCGACCGGCGGGCCCGTGGACAGCGCCAAGATACCGTCCGTG
CTCATCTCGGCCAGCAGCGGCCGCGTCCTGCACGCGCTCGCGACCGCGTG
CGCGGACCCGCTGGGACCGCGAGTATTCGTTGATGCATCCGACCCCTACG
AGAAGATGTTTGAGAGCCTCAACATGACCATGATAGGTGTAGTGTGCGGC
TTTTTGACATCGCTGCTGGCGTGCGCGAGCCTGTTCCTCTGCACCAGCCA
CCGCCTGCTGCGGCGCTACGATGCCATCGGCGGGCACGGCCGGCCGCCGC
GCCCGCTGTCCCTGGCGCAGGCGCTGCGCATGCCCGAGAAGAGCGTCACG
TGCGGCTGCGGCCTTGAGAAGGACAGCTGCGCCATCTGCCTGGAGGCGTA
CCGCGTGGGCGACAAAGTGATGCATTTGAACTGCGGGCACGTGCTCCATG
CCCACTGCCTGCGGCCGTGGCTTGCAGTCTCCATCGCCGGCATCGCAACC
GCGCAGCGCCCAGAGCGGCAACGCACCTGCCCGCTGTGCAAGGGCGACGT
CACGGACCCGCCGCCCACGCCGTCGCTGTCGCGGCCCTCGAGCCTGCAGG
GCTCGAGCATACGCCTGGTGCCGTCACCAGTGCAGCCCGCCCACGATACG
AGCAGGGCAGCGCCGCCGGACGCCGCCGCACGCCATGATGACAGCGGCGG
CATTGCCGTGGAGGAGGGGCTGAGGCAGGGCATGTGA
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