mRNA_1454 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|161983
Unique NamemRNA_1454
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
BLAST of jgi.p|Trimin1|161983 vs. uniprot
Match: A0A835Z566_9STRA (FirrV-1-B50 n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z566_9STRA)

HSP 1 Score: 880 bits (2273), Expect = 0.000e+0
Identity = 437/437 (100.00%), Postives = 437/437 (100.00%), Query Frame = 1
Query:    1 TIWKSVHTRFTSCALDDEFQELSTSGFASTSTATISRYGDLVSRITLEIVLPPLSAPDIPDTSAGAPAGALYADTGAHYVNCIGFAAWEDCIIEIGGSTVDQLFSDFCFIYEELAGRAGMRLEEAIGRVPFSADVDEDLIEKSTREQTLYVPLPLWFSKYQPATWGLALPIVALSFHEIKLKLKTRSIAECVSVIYKDSAGDWRLSDLAPINATTGTALVNSDMKIRLLVSFVYLDVTERNAMSSVAHSFLINVTQRQVMAVAAGSFSKIENKLFFNHPCSSLLWYMRPLDWNTEGGRRRFSCGYKDRYDFSHQQQGSVDATKGLPWGDAIDAITTASLSLNGHQRWPQDQNSAYFRVLTPYTSWRTMPTTNIYTYSFALQAHDWQPTAHLNFSRYNHVSLGLTFAAGIKASELIAMVESYNLLIIANGLGGLKFSN 1311
            TIWKSVHTRFTSCALDDEFQELSTSGFASTSTATISRYGDLVSRITLEIVLPPLSAPDIPDTSAGAPAGALYADTGAHYVNCIGFAAWEDCIIEIGGSTVDQLFSDFCFIYEELAGRAGMRLEEAIGRVPFSADVDEDLIEKSTREQTLYVPLPLWFSKYQPATWGLALPIVALSFHEIKLKLKTRSIAECVSVIYKDSAGDWRLSDLAPINATTGTALVNSDMKIRLLVSFVYLDVTERNAMSSVAHSFLINVTQRQVMAVAAGSFSKIENKLFFNHPCSSLLWYMRPLDWNTEGGRRRFSCGYKDRYDFSHQQQGSVDATKGLPWGDAIDAITTASLSLNGHQRWPQDQNSAYFRVLTPYTSWRTMPTTNIYTYSFALQAHDWQPTAHLNFSRYNHVSLGLTFAAGIKASELIAMVESYNLLIIANGLGGLKFSN
Sbjct:    1 TIWKSVHTRFTSCALDDEFQELSTSGFASTSTATISRYGDLVSRITLEIVLPPLSAPDIPDTSAGAPAGALYADTGAHYVNCIGFAAWEDCIIEIGGSTVDQLFSDFCFIYEELAGRAGMRLEEAIGRVPFSADVDEDLIEKSTREQTLYVPLPLWFSKYQPATWGLALPIVALSFHEIKLKLKTRSIAECVSVIYKDSAGDWRLSDLAPINATTGTALVNSDMKIRLLVSFVYLDVTERNAMSSVAHSFLINVTQRQVMAVAAGSFSKIENKLFFNHPCSSLLWYMRPLDWNTEGGRRRFSCGYKDRYDFSHQQQGSVDATKGLPWGDAIDAITTASLSLNGHQRWPQDQNSAYFRVLTPYTSWRTMPTTNIYTYSFALQAHDWQPTAHLNFSRYNHVSLGLTFAAGIKASELIAMVESYNLLIIANGLGGLKFSN 437          
BLAST of jgi.p|Trimin1|161983 vs. uniprot
Match: A0A835ZCT3_9STRA (FirrV-1-B50 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZCT3_9STRA)

HSP 1 Score: 775 bits (2001), Expect = 1.040e-280
Identity = 388/424 (91.51%), Postives = 400/424 (94.34%), Query Frame = 1
Query:   10 KSVHTRFTSCALDDEFQELSTSGFASTSTATISRYGDLVSRITLEIVLPPLSAPDIPDTSAGAPAGALYADTGAHYVNCIGFAAWEDCIIEIGGSTVDQLFSDFCFIYEELAGRAGMRLEEAIGRVPFSADVDEDLIEKSTREQTLYVPLPLWFSKYQPATWGLALPIVALSFHEIKLKLKTRSIAECVSVIYKDSAGDWRLSDLAPINATTGTALVNSDMKIRLLVSFVYLDVTERNAMSSVAHSFLINVTQRQVMAVAAGSFSKIENKLFFNHPCSSLLWYMRPLDWNTEGGRRRFSCGYKDRYDFSHQQQGSVDATKGLPWGDAIDAITTASLSLNGHQRWPQDQNSAYFRVLTPYTSWRTMPTTNIYTYSFALQAHDWQPTAHLNFSRYNHVSL--GLTFAAGIKASELIAMVESYNLLI 1275
            ++VHTRFTSCALDDEFQELSTSGFASTSTATISRYGDLVSRITLEIVLPPLSAPDIPDTS+GA AGA YADT A+YVN I FAAWED I+EIGGSTVDQLFSDFCFIYEELAGRAGMRLEEAIGRVPFSADVDEDL EKS REQTLYVPLPLWFSKYQPATWGLALPIVALSFHEIKLKLKTRSIAECVSV+YKDSAGDWRLSDLAPINATTGTALVNSDMK+RLLVSFVYLDVTERNAMSSVAHSFLINVTQRQVMAVAAGSFSKIENKLFFNHPCSSLLWYMRP DWN EGGRRRFSCGYKDR+DFSHQ+QG+VDATKGL WGD +D ITTAS SLNGHQRWPQDQN+ YFRVLTPYTSWRTMPTTNIYTYSFALQA DWQPTAHLN SR     L  GLTFAAGIKASELIAMVESYNLLI
Sbjct:   40 RAVHTRFTSCALDDEFQELSTSGFASTSTATISRYGDLVSRITLEIVLPPLSAPDIPDTSSGAGAGAHYADTAAYYVNSIDFAAWEDVILEIGGSTVDQLFSDFCFIYEELAGRAGMRLEEAIGRVPFSADVDEDLAEKSAREQTLYVPLPLWFSKYQPATWGLALPIVALSFHEIKLKLKTRSIAECVSVVYKDSAGDWRLSDLAPINATTGTALVNSDMKLRLLVSFVYLDVTERNAMSSVAHSFLINVTQRQVMAVAAGSFSKIENKLFFNHPCSSLLWYMRPQDWNLEGGRRRFSCGYKDRFDFSHQEQGTVDATKGLAWGDTVDPITTASRSLNGHQRWPQDQNAVYFRVLTPYTSWRTMPTTNIYTYSFALQAQDWQPTAHLNMSRLKKTGLKNGLTFAAGIKASELIAMVESYNLLI 463          
BLAST of jgi.p|Trimin1|161983 vs. uniprot
Match: A0A835Z3V1_9STRA (Putative major capsid protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z3V1_9STRA)

HSP 1 Score: 761 bits (1965), Expect = 5.470e-276
Identity = 366/432 (84.72%), Postives = 408/432 (94.44%), Query Frame = 1
Query:    1 TIWKSVHTRFTSCALDDEFQELSTSGFASTSTATISRYGDLVSRITLEIVLPPLSAPDIPDTSAGAPAGALYADTGAHYVNCIGFAAWEDCIIEIGGSTVDQLFSDFCFIYEELAGRAGMRLEEAIGRVPFSADVDEDLIEKSTREQTLYVPLPLWFSKYQPATWGLALPIVALSFHEIKLKLKTRSIAECVSVIYKDSAGDWRLSDLAPINATTGTALVNSDMKIRLLVSFVYLDVTERNAMSSVAHSFLINVTQRQVMAVAAGSFSKIENKLFFNHPCSSLLWYMRPLDWNTEGGRRRFSCGYKDRYDFSHQQQGSVDATKGLPWGDAIDAITTASLSLNGHQRWPQDQNSAYFRVLTPYTSWRTMPTTNIYTYSFALQAHDWQPTAHLNFSRYNHVSLGLTFAAGIKASELIAMVESYNLLIIANGLGG 1296
            TI+KSVHTRFTS ALDD+FQELSTSGFASTSTAT+SRYGDL+SRITLEIVLP L APDIPDTSAGA AGALYA+TGA+YVNCIG+A WEDCI+EIGGST+DQLFSDFCFIYEE+AGRAG+RLEEA+GRV FS  VD+DLIEKS+REQTLYVPLPLWFSKY PAT+GLALPIVALSFHEIKLKLKTRSIAECVSV+YKD+AGDWRLSDLAPIN  TGTALVNSD+K+RLLVS+VYLDVTERNAMSSVAHS LINVTQRQVM+VAAGS++K E KLF NHPC+ L+WY+RPLDWNTEGGRRRFSCGYKDR+DFSHQ++GSVD TKGLPWGD++DAITTASLSLNGHQRWP D  + YFRV+TP+TSWRTMP+T IY+YSFALQAHDWQPT+HLNFSR +H+SLGLTFA+GIKASEL+A VESYNLL+IANGLGG
Sbjct:    1 TIFKSVHTRFTSFALDDDFQELSTSGFASTSTATLSRYGDLISRITLEIVLPALKAPDIPDTSAGASAGALYAETGAYYVNCIGWAVWEDCILEIGGSTIDQLFSDFCFIYEEMAGRAGLRLEEAVGRVAFSEAVDDDLIEKSSREQTLYVPLPLWFSKYNPATFGLALPIVALSFHEIKLKLKTRSIAECVSVVYKDAAGDWRLSDLAPINKATGTALVNSDLKMRLLVSYVYLDVTERNAMSSVAHSMLINVTQRQVMSVAAGSYAKSEQKLFMNHPCTDLIWYLRPLDWNTEGGRRRFSCGYKDRFDFSHQEEGSVDPTKGLPWGDSVDAITTASLSLNGHQRWPADMKANYFRVVTPWTSWRTMPSTPIYSYSFALQAHDWQPTSHLNFSRLDHISLGLTFASGIKASELVAFVESYNLLVIANGLGG 432          
BLAST of jgi.p|Trimin1|161983 vs. uniprot
Match: A0A835Z4S3_9STRA (Large eukaryotic DNA virus major capsid protein-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z4S3_9STRA)

HSP 1 Score: 612 bits (1577), Expect = 1.850e-214
Identity = 298/438 (68.04%), Postives = 362/438 (82.65%), Query Frame = 1
Query:    1 TIWKSVHTRFTSCALDDEFQELSTSGFASTSTATISRYGDLVSRITLEIVLPPLSAPDIPDTSAGAPAGALYADTGAHYVNCIGFAAWEDCIIEIGGSTVDQLFSDFCFIYEELAGRAGMRLEEAIGRVPFSADVDEDLIEKSTREQTLYVPLPLWFSKYQPATWGLALPIVALSFHEIKLKLKTRSIAECVSVIYKDSAGDWRLSD-LAPINATTGTALVNSDMKIRLLVSFVYLDVTERNAMSSVAHSFLINVTQRQVMAVAAGSFSKIENKLFFNHPCSSLLWYMRPLDWNTEGGRRRFSCGYKDRYDFSHQQQGSVDATKGLPWGDAIDAITTASLSLNGHQRWPQDQNSAYFRVLTPYTSWRTMPTTNIYTYSFALQAHDWQPTAHLNFSRYNHVSLGLTFAAGIKASELIAMVESYNLLIIANGLGGLKFSN 1311
            TIW+SVHTRFTSCA+DDEFQ+LS SGF ++S+ATI+RYGDL+SR+TLEI LPPL+AP +P T          ADT AH+VNCIGFA WED  +EIGGS VDQL+SDF  IYEELAGR G+RLEEAIGRV FS  VDEDLIEK+ ++Q LYVPLPLWFSKYQPAT+GLALPIVAL+FH++++K+KTRSI+EC  V+YKD+A  W+L++   P+NA TGTALVN+D+KIRL+V+ VYLD TER AMSSV HSFLI+  QRQV ++AA   +K E KLFFNHP SSL+W++RPLDWNTE GRRRFSCG++DRYDF+   + S DA+  LP+GDA+D I TASL+LNGH RWP D +S YFR+  PY +WRTMPTT+IYTYSFAL+AH WQPT+HLNFSR +HVSLG TF   IK+SE  + VE+YNLL+I +GLGGL+FSN
Sbjct:  161 TIWRSVHTRFTSCAMDDEFQDLSNSGFDTSSSATINRYGDLISRVTLEITLPPLAAPQVPITGTSPVTYHPAADTAAHWVNCIGFACWEDVQVEIGGSLVDQLYSDFAMIYEELAGRPGVRLEEAIGRVQFSDAVDEDLIEKAKKQQILYVPLPLWFSKYQPATYGLALPIVALTFHDVRIKIKTRSISECTCVLYKDNAA-WKLAENQIPLNANTGTALVNADLKIRLMVTSVYLDTTERTAMSSVVHSFLISTAQRQVHSIAANQSTKQEEKLFFNHPASSLIWFVRPLDWNTEAGRRRFSCGFRDRYDFT-AHEASTDAS--LPYGDAVDPIRTASLTLNGHARWPTDMDSRYFRMHMPYCAWRTMPTTSIYTYSFALEAHQWQPTSHLNFSRLDHVSLGWTFCPNIKSSEAFSFVEAYNLLVIRDGLGGLRFSN 594          
BLAST of jgi.p|Trimin1|161983 vs. uniprot
Match: A0A835ZBK3_9STRA (Putative major capsid protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZBK3_9STRA)

HSP 1 Score: 573 bits (1476), Expect = 4.070e-201
Identity = 279/439 (63.55%), Postives = 346/439 (78.82%), Query Frame = 1
Query:    1 TIWKSVHTRFTSCALDDEFQELSTSGFASTSTATISRYGDLVSRITLEIVLPPLSAPDIPDTSAGAPAGALYADTGAHYVNCIGFAAWEDCIIEIGGSTVDQLFSDFCFIYEELAGRAGMRLEEAIGRVPFSADVDEDLIEKSTREQTLYVPLPLWFSKYQPATWGLALPIVALSFHEIKLKLKTRSIAECVSVIYKDSAGD-WRLSD-LAPINATTGTALVNSDMKIRLLVSFVYLDVTERNAMSSVAHSFLINVTQRQVMAVAAGSFSKIENKLFFNHPCSSLLWYMRPLDWNTEGGRRRFSCGYKDRYDFSHQQQGSVDATKGLPWGDAIDAITTASLSLNGHQRWPQDQNSAYFRVLTPYTSWRTMPTTNIYTYSFALQAHDWQPTAHLNFSRYNHVSLGLTFAAGIKASELIAMVESYNLLIIANGLGGLKFSN 1311
            TIW++VHTRFTSCA+DDE QELS SGF ++S+ATI+RYGDL+SR++LEIVLPPL+AP+I    A   A    AD  A+YVN IG+A WED  +EIGGS VDQL+SDF  I+EELAGR G+RLEE IG+V +SA+VD+DLIEK++R+QTLYVPLPLW SKYQPATWGLALPIVAL+FH++++K+KTR IA+C  V ++D+    W L + L P+N  T T LVNSD+KIRL+++ VYLDVTER AMSSV HSFLIN  QRQ+  V A   SK+E KL+ NHPCS++ W +RPL+WNT  GRRRFSCG++DRYDFSH++ G+V  T  LP+G+AI  I  ASLSLNGHQRWP D  S+YF    PY  WRTMP T I TYSFAL+A  WQPT+ LNFSR +HVSLG  F A ++ASE++   E+YNLL+I +GLGGL+FSN
Sbjct:   27 TIWRAVHTRFTSCAMDDELQELSNSGFDTSSSATINRYGDLISRVSLEIVLPPLAAPEIAIAGASPAANYAPADCAAYYVNSIGYACWEDVQVEIGGSLVDQLYSDFAVIFEELAGRPGLRLEECIGKVQYSAEVDDDLIEKASRQQTLYVPLPLWMSKYQPATWGLALPIVALTFHDVRIKIKTRPIADCTVVCHRDAVSQAWTLDEGLLPLNGNTLTPLVNSDLKIRLMITSVYLDVTERAAMSSVTHSFLINTAQRQIATVPANVSSKLETKLYLNHPCSAMTWVVRPLNWNTNAGRRRFSCGFRDRYDFSHKEAGTV--TSALPYGNAISPIANASLSLNGHQRWPVDMPSSYFTNHQPYVHWRTMPATPIMTYSFALEAAQWQPTSTLNFSRLDHVSLGFNFNAELQASEMLVFAEAYNLLVIRDGLGGLRFSN 463          
BLAST of jgi.p|Trimin1|161983 vs. uniprot
Match: A0A835Z0V5_9STRA (Putative major capsid protein n=3 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z0V5_9STRA)

HSP 1 Score: 568 bits (1464), Expect = 5.810e-200
Identity = 279/425 (65.65%), Postives = 347/425 (81.65%), Query Frame = 1
Query:   43 LDDEFQELSTSGFASTSTATISRYGDLVSRITLEIVLPPLSAPDIPDTSAGAPAGALYA--DTGAHYVNCIGFAAWEDCIIEIGGSTVDQLFSDFCFIYEELAGRAGMRLEEAIGRVPFSADVDEDLIEKSTREQTLYVPLPLWFSKYQPATWGLALPIVALSFHEIKLKLKTRSIAECVSVIYKDSAGDWRLSDLAPINATTGTALVNSDMKIRLLVSFVYLDVTERNAMSSVAHSFLINVTQRQVMAVAAGSFSKIENKLFFNHPCSSLLWYMRPLDWNTEGGRRRFSCGYKDRYDFSHQQQGSVDATKGLPWGDAIDAITTASLSLNGHQRWPQDQNSAYFRVLTPYTSWRTMPTTNIYTYSFALQAHDWQPTAHLNFSRYNHVSLGLTFAAGIKASELIAMVESYNLLIIANGLGGLKFSN 1311
            +DD+FQELS SGF ++S+ATI+RYGDL+SRITLEI LPPL+AP +P   A  P    YA  DT AH+VN IGFA WED  +EIGGS VDQL+SDF  IYEELAGR G+RLEE+IGRVP+SA+VD DLIEK+ + Q LYVPLPLWFSKYQP+T+GLALPIVAL+FH+++LK+KTRSIA+C  V+YK+    W L+DLAP+NA+TGT LVN+D+KIRL+VS VYLD TER AMS+V HSFLIN TQRQV ++AAG  ++ E KL+FNHP SSL+W +RPLDWNT+ GRRRFSCG+KDR+DF+  +    D+   L +G+A+D I ++SLSLNGHQRWP D  S YFR   PY +WRT+P+T+IY+YSFAL+A  WQPT+HLNFSR +HVSLG +FA GIK+SE  + VE+YNLL+I +GLGGL+FSN
Sbjct:    1 MDDDFQELSNSGFDTSSSATINRYGDLISRITLEIRLPPLAAPQVPVVPATNPV-TYYASEDTAAHWVNAIGFACWEDVQVEIGGSLVDQLYSDFAMIYEELAGRPGVRLEESIGRVPYSAEVDLDLIEKAQKAQILYVPLPLWFSKYQPSTYGLALPIVALTFHDVRLKIKTRSIADCTCVVYKED-DVWHLTDLAPLNASTGTTLVNADLKIRLMVSSVYLDTTERTAMSTVTHSFLINTTQRQVHSIAAGQSTRQEEKLYFNHPSSSLIWIVRPLDWNTQAGRRRFSCGFKDRFDFTAYEASDDDS---LIYGNAVDPIVSSSLSLNGHQRWPTDMPSTYFRTHVPYCNWRTLPSTSIYSYSFALEASAWQPTSHLNFSRLDHVSLGWSFAPGIKSSEAFSFVEAYNLLVIRDGLGGLRFSN 420          
BLAST of jgi.p|Trimin1|161983 vs. uniprot
Match: Q6XLY6_9PHYC (FirrV-1-B50 n=2 Tax=root TaxID=1 RepID=Q6XLY6_9PHYC)

HSP 1 Score: 362 bits (929), Expect = 1.180e-118
Identity = 195/445 (43.82%), Postives = 281/445 (63.15%), Query Frame = 1
Query:    1 TIWKSVHTRFTSCALDDEFQELS--TSGFASTSTATISRYGDLVSRITLEIVLPPLSAP-DIPDTSAGAPAGALYADTGAHYVNCIGFAAWEDCIIEIGGSTVDQLFSDFCFIYEELAGRAGMRLEEAIGRVPFSADVDEDLIEKSTREQTLYVPLPLWFSKYQPATWGLALPIVALSFHEIKLKLKTRSIAECVSVIYKD---SAGDWRL--SDLAPINATTGTALVNSDMKIRLLVSFVYLDVTERNAMSSVAHSFLINVTQRQVMAVAAGSFSKIENKLFFNHPCSSLLWYMRPLDWNTEGGRRRFSCGYKDRYDFSHQQQGSVDATKGLPWGDAIDAITTASLSLNGHQRWPQDQNSAYFRVLTPYTSWRTMPTTNIYTYSFALQAHDWQPTAHLNFSRYNHVSLGLTFAAGIKASELIAMVESYNLLIIANGLGGLKFSN 1311
            T++K+VH RFTS A D E  + S  T GF    +ATISRYGDLV+ + +EI LPP+ A  ++ D S    A A   D  A++VN IGFA   +  IEIGG+ VD L+ ++ F +EE+  R G RL E IG+  +SADV+ED+IE + + +TLYVPLP WF+KY     GL++P++AL++HEIK+K+  R ++EC  V+Y+    + G++        P+N+T+G+ LV+SDM  +LLVS+VYLD  ER+A ++  H++LI  TQRQ+ A+ +   S  + KL+FNHP + L W++RP DW T   RRR+S G+ D +D+S +    V       WGD  D + TASL+LNGH R+P +    +FR   P   W       +Y +SF+LQ   WQPT+ LN SR +HV L L +   I  S +    ESYNLL++  G+GG+++SN
Sbjct:    2 TLFKTVHRRFTSFAEDLEENDFSAGTVGFGQKVSATISRYGDLVTDMFMEIHLPPIEAAVNVTDASGNTVADA---DKAAYWVNAIGFALISEVQIEIGGTEVDILYPEWMFFWEEMTQRPGARLGEQIGKFTYSADVEEDMIEFAQQARTLYVPLPFWFNKYFMEA-GLSIPLIALTYHEIKVKVTFRPLSECCCVVYRTEDPTHGEYYALAEGKVPVNSTSGSTLVSSDMDAKLLVSYVYLDKKERDAFATTEHTYLITTTQRQMHAITSAGSSSDQIKLYFNHPSNCLTWFVRPTDWMTN--RRRYSVGHMDLFDYSLKSTSDVSV-----WGDVTDPVKTASLTLNGHSRFPDNMPGLFFRQTQPIMKWPNCSNGYMYVFSFSLQGGSWQPTSTLNMSRIDHVQLELKYGTSIPTSNVFVFAESYNLLVVKEGMGGVRYSN 435          
BLAST of jgi.p|Trimin1|161983 vs. uniprot
Match: B5LWE8_9PHYC (Putative major capsid protein n=1 Tax=Feldmannia species virus TaxID=39420 RepID=B5LWE8_9PHYC)

HSP 1 Score: 360 bits (925), Expect = 4.740e-118
Identity = 190/444 (42.79%), Postives = 279/444 (62.84%), Query Frame = 1
Query:    1 TIWKSVHTRFTSCALDDEFQELS--TSGFASTSTATISRYGDLVSRITLEIVLPPLSAPDIPDTSAGAPAGALYADTGAHYVNCIGFAAWEDCIIEIGGSTVDQLFSDFCFIYEELAGRAGMRLEEAIGRVPFSADVDEDLIEKSTREQTLYVPLPLWFSKYQPATWGLALPIVALSFHEIKLKLKTRSIAECVSVIYK---DSAGDW--RLSDLAPINATTGTALVNSDMKIRLLVSFVYLDVTERNAMSSVAHSFLINVTQRQVMAVAAGSFSKIENKLFFNHPCSSLLWYMRPLDWNTEGGRRRFSCGYKDRYDFSHQQQGSVDATKGLPWGDAIDAITTASLSLNGHQRWPQDQNSAYFRVLTPYTSWRTMPTTNIYTYSFALQAHDWQPTAHLNFSRYNHVSLGLTFAAGIKASELIAMVESYNLLIIANGLGGLKFSN 1311
            T++K+VH R+TS A D E  + S  T GF    +A +SRYGDLV+ + +E+ LPP+ A      + G       AD  A++VN IG+A   +  IEIGG+ VD L+ ++ F +E +  R G RL E IG+  +SADV+ED+IE + + +TLYVPLP WF+KY   T GL++P++AL++HEIK+K+  R ++EC  V+Y+   ++ G++        P+N T+G+ LV+SDM  +LL+S+VYLD  ER+A +S  HS+LI  TQRQ+ A+ +   +  + KL+FNHP + L W++RP DW T   RRRFS G+ D +DFS      V       WGD ID + +ASL+LNGH R+P      +FR   P   W       +Y +SF+LQ   WQPT+ LN SR +HV L L + + I  S++    ESYNLL++ +G+GG+++SN
Sbjct:    2 TLFKTVHKRYTSFAEDLEENDFSAGTVGFGQKVSANVSRYGDLVTDMFMEVALPPIEAAATVTNAEGVEVAD--ADKAAYWVNAIGYALISEIQIEIGGTEVDTLYPEWMFFWESMTQRPGARLGEQIGKFAYSADVEEDMIEFAQQARTLYVPLPFWFNKYFMET-GLSIPLIALTYHEIKVKVTFRPLSECCCVVYRAEDETHGEYFALAEGKTPVNTTSGSTLVSSDMDAKLLISYVYLDKAERDAFASTEHSYLITRTQRQLHAITSAGSASDQIKLYFNHPSNCLAWFVRPTDWTTN--RRRFSVGHMDSFDFSLHTDSDVSV-----WGDVIDPVKSASLNLNGHSRFPDGMPGLFFRQTQPIMKWPNCSDGFMYVFSFSLQGGAWQPTSTLNMSRIDHVQLELKYGSNIPTSDVFVFAESYNLLVVKDGMGGVRYSN 435          
BLAST of jgi.p|Trimin1|161983 vs. uniprot
Match: Q8QNG3_ESV1K (EsV-1-116 n=4 Tax=root TaxID=1 RepID=Q8QNG3_ESV1K)

HSP 1 Score: 357 bits (917), Expect = 2.790e-116
Identity = 194/442 (43.89%), Postives = 279/442 (63.12%), Query Frame = 1
Query:    1 TIWKSVHTRFTSCALDDEFQELS--TSGFASTSTATISRYGDLVSRITLEIVLPPLSAPDIPDTSAGAPAGALYADTGAHYVNCIGFAAWEDCIIEIGGSTVDQLFSDFCFIYEELAGRAGMRLEEAIGRVPFSADVDEDLIEKSTREQTLYVPLPLWFSKYQPATW---GLALPIVALSFHEIKLKLKTRSIAECVSVIYKDSAGDWR-----LSDLAPINATTGTALVNSDMKIRLLVSFVYLDVTERNAMSSVAHSFLINVTQRQVMAVAAGSFSKIENKLFFNHPCSSLLWYMRPLDWNTEGGRRRFSCGYKDRYDFSHQQQGSVDATKGLPWGDAIDAITTASLSLNGHQRWPQDQNSAYFRVLTPYTSWRTMPTTNIYTYSFALQAHDWQPTAHLNFSRYNHVSLGLTFAAGIKASELIAMVESYNLLIIANGLGG 1296
            T++KS H R+T+ A D E  + S  T GF    +A +SRYGDLVS + LE+ LP + A +     AG       AD  A++VN IG+A   +  IEIGG+ VD L+S++ F++EEL  R G RL E IG+  +SADV+ED+IE +++E+ LYVPLP WF+KY    W   GL++P++AL++HEIK+K+  R +A+C +V+Y++S   W       +D  PIN  + +A+  SDM  RLLVS+VYLD  ER A +SV H +LI  TQRQ+ ++ + S    + KL+FNHP ++L+W++RP D+     RRRFS G+KD +DFS Q++   DAT  + WGD  D++ +ASL+LNGH R+P      +FR + P   W   P    Y ++FA     W PT+ LN SR +HV L L +   I  S++I   E+YNLL+I  G+GG
Sbjct:    2 TLFKSQHKRYTNFAEDFEENDFSAGTVGFGQRVSANVSRYGDLVSDVLLEVTLPAIQASESVVNGAGTEVAD--ADKAAYWVNAIGYAIISEVEIEIGGTEVDTLYSEWMFLWEELTQRPGARLGEQIGKFAYSADVEEDMIEFASQERKLYVPLPFWFNKY----WMEHGLSIPLIALTYHEIKIKVSFRPLADCCAVVYRESDPTWGDYWALAADKIPINTASASAMAASDMDARLLVSYVYLDQEERQAFASVQHEYLITTTQRQMHSITSASAKSDQLKLYFNHPSNALIWFVRPTDFKNL--RRRFSVGHKDMFDFSLQKE---DATVSM-WGDVTDSVASASLTLNGHSRFPDSLPGLFFRQVQPALKWPNTPAGYTYLFTFAALGGVWNPTSTLNMSRIDHVQLELKYGDNIPTSDVIVFNEAYNLLVIKEGMGG 431          
BLAST of jgi.p|Trimin1|161983 vs. uniprot
Match: Q4H484_HAV01 (Hypothetical major capsid protein n=1 Tax=Heterosigma akashiwo virus 01 TaxID=97195 RepID=Q4H484_HAV01)

HSP 1 Score: 179 bits (453), Expect = 9.250e-48
Identity = 140/454 (30.84%), Postives = 229/454 (50.44%), Query Frame = 1
Query:    1 TIWKSVHTRFTSCALDDEFQELS-TSGFASTSTATISRYGDLVSRITLEIVLPPLSAPDIPDTSAGAPAGALYADTGAHYVNCIGFAAWEDCIIEIGGSTVDQLFSDFCFIYEELAGRAGMR--LEEAIGRVPFSADVDEDLIEKSTREQTLYVPLPLWFSKYQPATWGLALPIVALSFHEIKLKLKTRSIAECVSVIYKDSAGDWRLSDLAPINATTGTALVNSDMKIRLLVSFVYLDVTERNAMSSVAHSFLINVTQRQVMAVAAGSFSKIENKLF--FNHPCSSLLWYMRPLDWNTEGGRRRFSCGYKDRYDFSHQQQGSVDATKGLPWGDAIDAITTASLSLNGHQRWPQDQNSAYFRVLTPYTSWRTMPTTNIYTYSFALQAHDWQPTAHLNFSRYNHVSL-----GLTFAAGI-------KASELIAMVESYNLLIIANGLGGLKFSN 1311
            T +K V+ R T+ A++   Q  + T+ F    T TISR GDL++ + L++ LP LS   +   ++G+P       T   + N IG A   +  +EIGG  +D+ F  +  I++EL      +    + IG+  +++++   LI  S  E+  Y+PL  WF +      GL+LP+VAL +HE+K+ ++ R+  EC+ V  K +     + D A    TT T + N+    +L V ++YLD  ER   ++ +H +L+   Q Q     + SFS+   KL   FNHP   LLW ++  + +T  G       Y D ++FS    G+   +       A+D +  A L LNGH+R+   +   YFR++ PY     +P  +IY YSFA++  + QP+   NFSR + V L      L+   GI          ++     +YN+L I +G+ GL ++N
Sbjct:   25 TFFKVVYRRHTNFAIESIEQTFNGTADFGKKVTCTISRNGDLINHVYLQVQLPSLSTGLV---ASGSP-------TYVSWTNAIGHALIRNVEVEIGGQRIDRQFGTWLEIWDELTMTTEKKNGYNQMIGK--YASELG--LIGNSYYERIYYIPLQFWFCRNP----GLSLPLVALQYHEVKIIIEFRNAHECI-VALKANGDRVAIGDNATTFTTTPT-ITNA----QLYVDYIYLDTNERKLFAATSHEYLVE--QLQFTGAESLSFSQQNQKLRLNFNHPVKELLWVLQRDENSTSAG-----TAYNDWFNFSAAAPGTPSPSH------AVDLLADAKLLLNGHERFTV-RPQTYFRLVQPYQHHTRIPDKHIYLYSFAIRPEEHQPSGTCNFSRIDTVQLVYDLTSLSTLTGIGTGMDTASTGQISVFAVNYNVLRIVSGMAGLAYAN 440          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|161983 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835Z566_9STRA0.000e+0100.00FirrV-1-B50 n=2 Tax=Tribonema minus TaxID=303371 R... [more]
A0A835ZCT3_9STRA1.040e-28091.51FirrV-1-B50 n=1 Tax=Tribonema minus TaxID=303371 R... [more]
A0A835Z3V1_9STRA5.470e-27684.72Putative major capsid protein n=1 Tax=Tribonema mi... [more]
A0A835Z4S3_9STRA1.850e-21468.04Large eukaryotic DNA virus major capsid protein-do... [more]
A0A835ZBK3_9STRA4.070e-20163.55Putative major capsid protein n=1 Tax=Tribonema mi... [more]
A0A835Z0V5_9STRA5.810e-20065.65Putative major capsid protein n=3 Tax=Tribonema mi... [more]
Q6XLY6_9PHYC1.180e-11843.82FirrV-1-B50 n=2 Tax=root TaxID=1 RepID=Q6XLY6_9PHY... [more]
B5LWE8_9PHYC4.740e-11842.79Putative major capsid protein n=1 Tax=Feldmannia s... [more]
Q8QNG3_ESV1K2.790e-11643.89EsV-1-116 n=4 Tax=root TaxID=1 RepID=Q8QNG3_ESV1K[more]
Q4H484_HAV019.250e-4830.84Hypothetical major capsid protein n=1 Tax=Heterosi... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_18contigContig_18:1094238..1095969 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|161983|e_gw1.18.342.1
GOsGO:0005575,GO:0019012
DescriptionLarge eukaryotic DNA virus major capsid protein
COG categoryS
Max annot lvl10239|Viruses
EggNOG OGs4QAX7@10239|Viruses,4QXNA@35237|dsDNA viruses no RNA stage
Evalue4.57e-117
Seed ortholog654926.Q8QNG3_ESV1K
Hectar predicted targeting categoryother localisation
TranscriptId162305
TrackFilteredModels1
ProteinId161983
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|161983gene_1454Tribonema minus UTEX_B_3156 geneContig_18 1094238..1095969 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_1454_1exon_1454_1Tribonema minus UTEX_B_3156 exonContig_18 1094238..1095421 +
exon_1454_2exon_1454_2Tribonema minus UTEX_B_3156 exonContig_18 1095780..1095784 +
exon_1454_3exon_1454_3Tribonema minus UTEX_B_3156 exonContig_18 1095845..1095969 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_1454CDS_1454Tribonema minus UTEX_B_3156 CDSContig_18 1094238..1095421 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|161983Trimin1|161983|e_gw1.18.342.1Tribonema minus UTEX_B_3156 polypeptideContig_18 1094238..1095969 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_1454 ID=mRNA_1454|Name=jgi.p|Trimin1|161983|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1314bp|location=Sequence derived from alignment at Contig_18:1094238..1095969+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ACGATATGGAAAAGCGTGCACACACGCTTCACTTCCTGCGCTCTAGATGA
TGAGTTCCAGGAACTCTCGACTAGCGGCTTTGCGTCCACCAGTACCGCCA
CCATCTCCCGTTATGGTGACCTGGTGAGCCGTATTACCCTCGAAATTGTG
CTTCCTCCTCTTTCTGCCCCCGACATCCCTGACACCTCCGCTGGAGCGCC
GGCCGGGGCACTGTACGCCGATACTGGCGCCCACTATGTCAACTGCATCG
GCTTCGCTGCCTGGGAGGATTGCATCATCGAGATCGGCGGGTCTACTGTC
GACCAGCTGTTCAGCGACTTCTGCTTCATCTATGAGGAGCTCGCTGGGCG
CGCCGGCATGCGTCTCGAGGAGGCCATCGGGCGTGTGCCCTTCAGCGCCG
ATGTCGATGAGGACCTCATTGAGAAGAGCACGCGTGAGCAGACCCTATAT
GTCCCCCTTCCTCTGTGGTTCAGTAAGTACCAACCGGCTACATGGGGCTT
AGCATTACCTATTGTAGCACTCAGCTTCCATGAGATCAAGCTGAAGCTGA
AGACCCGTTCCATTGCAGAGTGTGTTTCCGTCATTTACAAGGATAGTGCT
GGCGACTGGCGCCTGTCGGACCTGGCTCCGATCAACGCCACCACTGGCAC
TGCGCTGGTTAACAGCGACATGAAGATCCGCCTCCTTGTCAGCTTTGTTT
ACCTGGATGTTACCGAACGTAACGCCATGTCCTCGGTGGCCCACTCCTTC
CTTATTAACGTCACCCAGCGCCAGGTCATGGCTGTCGCCGCTGGCTCGTT
CTCCAAGATTGAGAACAAGCTGTTCTTCAACCACCCCTGTTCTTCGCTCC
TGTGGTACATGCGTCCCCTGGACTGGAACACGGAGGGCGGCCGTCGCCGT
TTCTCGTGCGGCTATAAGGATAGGTATGATTTCAGCCACCAGCAGCAGGG
TTCTGTGGATGCCACCAAGGGCCTTCCATGGGGGGACGCTATAGACGCCA
TCACAACCGCATCTCTTTCCCTTAACGGACACCAGCGCTGGCCACAAGAC
CAGAACTCAGCCTACTTTAGGGTGCTTACGCCGTACACGAGCTGGCGGAC
GATGCCCACGACCAACATTTACACGTACTCCTTTGCGCTGCAGGCACATG
ACTGGCAGCCAACCGCCCATCTTAACTTCTCGAGATATAATCACGTTTCG
CTGGGATTGACCTTCGCCGCCGGCATCAAAGCCAGCGAGCTCATCGCTAT
GGTTGAAAGCTACAATCTTTTGATTATAGCCAACGGCCTGGGTGGATTGA
AGTTCTCAAATTAA
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protein sequence of jgi.p|Trimin1|161983

>Trimin1|161983|e_gw1.18.342.1 ID=Trimin1|161983|e_gw1.18.342.1|Name=jgi.p|Trimin1|161983|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=438bp
TIWKSVHTRFTSCALDDEFQELSTSGFASTSTATISRYGDLVSRITLEIV
LPPLSAPDIPDTSAGAPAGALYADTGAHYVNCIGFAAWEDCIIEIGGSTV
DQLFSDFCFIYEELAGRAGMRLEEAIGRVPFSADVDEDLIEKSTREQTLY
VPLPLWFSKYQPATWGLALPIVALSFHEIKLKLKTRSIAECVSVIYKDSA
GDWRLSDLAPINATTGTALVNSDMKIRLLVSFVYLDVTERNAMSSVAHSF
LINVTQRQVMAVAAGSFSKIENKLFFNHPCSSLLWYMRPLDWNTEGGRRR
FSCGYKDRYDFSHQQQGSVDATKGLPWGDAIDAITTASLSLNGHQRWPQD
QNSAYFRVLTPYTSWRTMPTTNIYTYSFALQAHDWQPTAHLNFSRYNHVS
LGLTFAAGIKASELIAMVESYNLLIIANGLGGLKFSN*
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mRNA from alignment at Contig_18:1094238..1095969+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_1454 ID=mRNA_1454|Name=jgi.p|Trimin1|161983|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1732bp|location=Sequence derived from alignment at Contig_18:1094238..1095969+ (Tribonema minus UTEX_B_3156 )
ACGATATGGAAAAGCGTGCACACACGCTTCACTTCCTGCGCTCTAGATGA TGAGTTCCAGGAACTCTCGACTAGCGGCTTTGCGTCCACCAGTACCGCCA CCATCTCCCGTTATGGTGACCTGGTGAGCCGTATTACCCTCGAAATTGTG CTTCCTCCTCTTTCTGCCCCCGACATCCCTGACACCTCCGCTGGAGCGCC GGCCGGGGCACTGTACGCCGATACTGGCGCCCACTATGTCAACTGCATCG GCTTCGCTGCCTGGGAGGATTGCATCATCGAGATCGGCGGGTCTACTGTC GACCAGCTGTTCAGCGACTTCTGCTTCATCTATGAGGAGCTCGCTGGGCG CGCCGGCATGCGTCTCGAGGAGGCCATCGGGCGTGTGCCCTTCAGCGCCG ATGTCGATGAGGACCTCATTGAGAAGAGCACGCGTGAGCAGACCCTATAT GTCCCCCTTCCTCTGTGGTTCAGTAAGTACCAACCGGCTACATGGGGCTT AGCATTACCTATTGTAGCACTCAGCTTCCATGAGATCAAGCTGAAGCTGA AGACCCGTTCCATTGCAGAGTGTGTTTCCGTCATTTACAAGGATAGTGCT GGCGACTGGCGCCTGTCGGACCTGGCTCCGATCAACGCCACCACTGGCAC TGCGCTGGTTAACAGCGACATGAAGATCCGCCTCCTTGTCAGCTTTGTTT ACCTGGATGTTACCGAACGTAACGCCATGTCCTCGGTGGCCCACTCCTTC CTTATTAACGTCACCCAGCGCCAGGTCATGGCTGTCGCCGCTGGCTCGTT CTCCAAGATTGAGAACAAGCTGTTCTTCAACCACCCCTGTTCTTCGCTCC TGTGGTACATGCGTCCCCTGGACTGGAACACGGAGGGCGGCCGTCGCCGT TTCTCGTGCGGCTATAAGGATAGGTATGATTTCAGCCACCAGCAGCAGGG TTCTGTGGATGCCACCAAGGGCCTTCCATGGGGGGACGCTATAGACGCCA TCACAACCGCATCTCTTTCCCTTAACGGACACCAGCGCTGGCCACAAGAC CAGAACTCAGCCTACTTTAGGGTGCTTACGCCGTACACGAGCTGGCGGAC GATGCCCACGACCAACATTTACACGTACTCCTTTGCGCTGCAGGCACATG ACTGGCAGCCAACCGCCCATCTTAACTTCTCGAGGTTCGAAATATTTCAG ACCTGAAAAACGGTAGGGATGCGATAAGTGAGATACTCGCATCATAAAAC CGATTAGTGGCCTCACAACACTAGCCACAGCCGTTAGTGGTCTATACGCT TTACGTATAGGCTGCGACACTGCCAAATTGCGGGAATCCCCTTAGAGTCT TTGACTACCACTTCATTTGAGAAATCTCATGAAGGAACACGGTTAATAGC CGTACCCAAAGGTAATAATGTCAAAGAATTTGGGCAATCCGCAGCCAAGC TCCTAAACTCGTCATGTTAGAGTATGGAGAAGGTTCAACGACTAAATGGT AGTGGGTCCGAGCGGGCTAACACTCCGCAATGACGGCTTAAGATATAGTC TAGTCCCTGATGAACAGCATTCATCACAAATATCCCGAAAGGGAGGGTGT CAACGAGATCACGTTTCGCTGGGATTGACCTTCGCCGCCGGCATCAAAGC CAGCGAGCTCATCGCTATGGTTGAAAGCTACAATCTTTTGATTATAGCCA ACGGCCTGGGTGGATTGAAGTTCTCAAATTAA
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Coding sequence (CDS) from alignment at Contig_18:1094238..1095969+

>mRNA_1454 ID=mRNA_1454|Name=jgi.p|Trimin1|161983|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=1314bp|location=Sequence derived from alignment at Contig_18:1094238..1095969+ (Tribonema minus UTEX_B_3156 )
ACGATATGGAAAAGCGTGCACACACGCTTCACTTCCTGCGCTCTAGATGA
TGAGTTCCAGGAACTCTCGACTAGCGGCTTTGCGTCCACCAGTACCGCCA
CCATCTCCCGTTATGGTGACCTGGTGAGCCGTATTACCCTCGAAATTGTG
CTTCCTCCTCTTTCTGCCCCCGACATCCCTGACACCTCCGCTGGAGCGCC
GGCCGGGGCACTGTACGCCGATACTGGCGCCCACTATGTCAACTGCATCG
GCTTCGCTGCCTGGGAGGATTGCATCATCGAGATCGGCGGGTCTACTGTC
GACCAGCTGTTCAGCGACTTCTGCTTCATCTATGAGGAGCTCGCTGGGCG
CGCCGGCATGCGTCTCGAGGAGGCCATCGGGCGTGTGCCCTTCAGCGCCG
ATGTCGATGAGGACCTCATTGAGAAGAGCACGCGTGAGCAGACCCTATAT
GTCCCCCTTCCTCTGTGGTTCAGTAAGTACCAACCGGCTACATGGGGCTT
AGCATTACCTATTGTAGCACTCAGCTTCCATGAGATCAAGCTGAAGCTGA
AGACCCGTTCCATTGCAGAGTGTGTTTCCGTCATTTACAAGGATAGTGCT
GGCGACTGGCGCCTGTCGGACCTGGCTCCGATCAACGCCACCACTGGCAC
TGCGCTGGTTAACAGCGACATGAAGATCCGCCTCCTTGTCAGCTTTGTTT
ACCTGGATGTTACCGAACGTAACGCCATGTCCTCGGTGGCCCACTCCTTC
CTTATTAACGTCACCCAGCGCCAGGTCATGGCTGTCGCCGCTGGCTCGTT
CTCCAAGATTGAGAACAAGCTGTTCTTCAACCACCCCTGTTCTTCGCTCC
TGTGGTACATGCGTCCCCTGGACTGGAACACGGAGGGCGGCCGTCGCCGT
TTCTCGTGCGGCTATAAGGATAGGTATGATTTCAGCCACCAGCAGCAGGG
TTCTGTGGATGCCACCAAGGGCCTTCCATGGGGGGACGCTATAGACGCCA
TCACAACCGCATCTCTTTCCCTTAACGGACACCAGCGCTGGCCACAAGAC
CAGAACTCAGCCTACTTTAGGGTGCTTACGCCGTACACGAGCTGGCGGAC
GATGCCCACGACCAACATTTACACGTACTCCTTTGCGCTGCAGGCACATG
ACTGGCAGCCAACCGCCCATCTTAACTTCTCGAGATATAATCACGTTTCG
CTGGGATTGACCTTCGCCGCCGGCATCAAAGCCAGCGAGCTCATCGCTAT
GGTTGAAAGCTACAATCTTTTGATTATAGCCAACGGCCTGGGTGGATTGA
AGTTCTCAAATTAA
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