mRNA_14527 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|353182
Unique NamemRNA_14527
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|353182 vs. uniprot
Match: A0A835ZB80_9STRA (Telomere-capping, CST complex subunit-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZB80_9STRA)

HSP 1 Score: 177 bits (449), Expect = 1.040e-55
Identity = 90/90 (100.00%), Postives = 90/90 (100.00%), Query Frame = 1 
Query:    1 MHFNAATRVATLQHGTCTLAVDATLLPEFDFRIGSLFEFIGTVQVAGLERRVAARAHRNVDGLDMALYENVLRVRRAFLRTLSSEGGRAS 270
            MHFNAATRVATLQHGTCTLAVDATLLPEFDFRIGSLFEFIGTVQVAGLERRVAARAHRNVDGLDMALYENVLRVRRAFLRTLSSEGGRAS
Sbjct:    1 MHFNAATRVATLQHGTCTLAVDATLLPEFDFRIGSLFEFIGTVQVAGLERRVAARAHRNVDGLDMALYENVLRVRRAFLRTLSSEGGRAS 90
[Close]
BLAST of jgi.p|Trimin1|353182 vs. uniprot
Match: W4H842_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=W4H842_9STRA)

HSP 1 Score: 63.5 bits (153), Expect = 1.670e-10
Identity = 32/79 (40.51%), Postives = 48/79 (60.76%), Query Frame = 1 
Query:    7 FNAATRVATLQHGTCTLAVDATLLPEFDFRIGSLFEFIGTVQVAGLERRVAARAHRNVDGLDMALYENVLRVRRAFLRT 243
            ++AA  +A+L      + V   LL  FDF IGSL++FIG       + ++ AR  RNVDGLD  L+ + L++RR F++T
Sbjct:   32 YDAAKSIASLSFQNAVIVVATDLLVNFDFAIGSLYQFIGETYANEGKMQLRARVGRNVDGLDTQLFVDALKLRREFIKT 110
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BLAST of jgi.p|Trimin1|353182 vs. uniprot
Match: D8RL68_SELML (Uncharacterized protein (Fragment) n=3 Tax=Selaginella moellendorffii TaxID=88036 RepID=D8RL68_SELML)

HSP 1 Score: 62.4 bits (150), Expect = 4.170e-10
Identity = 37/77 (48.05%), Postives = 49/77 (63.64%), Query Frame = 1 
Query:    7 FNAATRVATLQHGTCTLAVDATLLPEFDFRIGSLFEFIGTVQVA-GLERRVAARAHRNVDGLDMALYENVLRVRRAF 234
            F+  + VA ++H    LAVD TLL +   R GSL++FIG + +  G+  R  AR  RNVDGLD+ LYE  LR+RR F
Sbjct:   34 FDVESGVAHIRHEGAKLAVDTTLLRDIHLRPGSLYQFIGELLLQNGMMLR--ARVARNVDGLDVKLYEKALRLRRIF 108
[Close]
BLAST of jgi.p|Trimin1|353182 vs. uniprot
Match: A0A485LP17_9STRA (Aste57867_23900 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485LP17_9STRA)

HSP 1 Score: 61.6 bits (148), Expect = 9.320e-10
Identity = 30/79 (37.97%), Postives = 48/79 (60.76%), Query Frame = 1 
Query:    7 FNAATRVATLQHGTCTLAVDATLLPEFDFRIGSLFEFIGTVQVAGLERRVAARAHRNVDGLDMALYENVLRVRRAFLRT 243
            ++A   +A L     T+ V   LL  FDF IGS+++FIG       + ++ AR  RNVDGLD+ ++ + L++RR F++T
Sbjct:   32 YDANKSLAALSFQNATIVVSTELLVNFDFMIGSMYQFIGETYAHEGKLQLRARVGRNVDGLDIQMFTDALKLRRDFIKT 110
[Close]
BLAST of jgi.p|Trimin1|353182 vs. uniprot
Match: A0A6G0XY99_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XY99_9STRA)

HSP 1 Score: 61.6 bits (148), Expect = 9.320e-10
Identity = 31/79 (39.24%), Postives = 49/79 (62.03%), Query Frame = 1 
Query:    7 FNAATRVATLQHGTCTLAVDATLLPEFDFRIGSLFEFIGTVQVAGLERRVAARAHRNVDGLDMALYENVLRVRRAFLRT 243
            +NA   +AT+     T+ V   LL  F+F IGSL++FIG       + ++ AR  RNVDGLD+ ++ + L++RR F++T
Sbjct:   32 YNANKAMATITFQNSTIVVSTELLVNFEFVIGSLYQFIGETYSDEGKLQLRARVGRNVDGLDIQMFMDALKLRREFIKT 110
[Close]
BLAST of jgi.p|Trimin1|353182 vs. uniprot
Match: A0A024UV78_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024UV78_9STRA)

HSP 1 Score: 61.2 bits (147), Expect = 1.310e-9
Identity = 31/79 (39.24%), Postives = 48/79 (60.76%), Query Frame = 1 
Query:    7 FNAATRVATLQHGTCTLAVDATLLPEFDFRIGSLFEFIGTVQVAGLERRVAARAHRNVDGLDMALYENVLRVRRAFLRT 243
            ++A+  +ATL      + V   LL  FDF +GSL++FIG       + ++ AR  RNVDGLD  L+ + L++RR F++T
Sbjct:   32 YDASKCLATLSFQNSVIVVATDLLVNFDFAVGSLYQFIGETYTNEGKMQLRARVGRNVDGLDTQLFLDALKLRREFIKT 110
[Close]
BLAST of jgi.p|Trimin1|353182 vs. uniprot
Match: A0A1V9YY36_9STRA (Uncharacterized protein n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9YY36_9STRA)

HSP 1 Score: 60.5 bits (145), Expect = 2.610e-9
Identity = 29/79 (36.71%), Postives = 48/79 (60.76%), Query Frame = 1 
Query:    7 FNAATRVATLQHGTCTLAVDATLLPEFDFRIGSLFEFIGTVQVAGLERRVAARAHRNVDGLDMALYENVLRVRRAFLRT 243
            F+A+ R A++     ++ V   LL   +  +GSL++FIG       E R+ AR  RNVDGLD+ ++ + L++RR F++T
Sbjct:   32 FDASQRTASISFQNSSMKVTTELLSNVELNLGSLYQFIGETYEQNGELRLKARIGRNVDGLDIQMFLDALKIRREFIKT 110
[Close]
BLAST of jgi.p|Trimin1|353182 vs. uniprot
Match: A0A2K1IND3_PHYPA (Uncharacterized protein n=2 Tax=Physcomitrium patens TaxID=3218 RepID=A0A2K1IND3_PHYPA)

HSP 1 Score: 60.1 bits (144), Expect = 4.400e-9
Identity = 32/77 (41.56%), Postives = 49/77 (63.64%), Query Frame = 1 
Query:    7 FNAATRVATLQHGTCTLAVDATLLPEFDFRIGSLFEFIGTVQVAGLER-RVAARAHRNVDGLDMALYENVLRVRRAF 234
            F++ + +A L     +L +D   L E   R+GSLFEFIG ++V   ++  + AR  RNVDG+DM L++ VL++RR F
Sbjct:   39 FDSTSGIAVLVDAGASLRLDLEHLRELPLRVGSLFEFIGELEVDTTQQLTLKARVGRNVDGMDMKLFDKVLQLRRRF 115
[Close]
BLAST of jgi.p|Trimin1|353182 vs. uniprot
Match: A0A804Q449_MAIZE (Uncharacterized protein n=2 Tax=Zea mays TaxID=4577 RepID=A0A804Q449_MAIZE)

HSP 1 Score: 59.7 bits (143), Expect = 8.500e-9
Identity = 31/75 (41.33%), Postives = 47/75 (62.67%), Query Frame = 1 
Query:    7 FNAATRVATLQHGTCTLAVDATLLPEFDFRIGSLFEFIGTVQVAGLERRVA-ARAHRNVDGLDMALYENVLRVRR 228
            F+  +  AT+Q G+ +L VD   L +  FR  S+++FIG +Q+  ++  +  AR  RNVDGLDM LY+  L +RR
Sbjct:   51 FDVESATATIQDGSVSLKVDTQHLRDVSFRTNSVYQFIGELQIREVDDAILLARIGRNVDGLDMNLYQQALLIRR 125
[Close]
BLAST of jgi.p|Trimin1|353182 vs. uniprot
Match: A0A4P9WP25_9FUNG (Telomere-capping, CST complex subunit-domain-containing protein n=1 Tax=Blyttiomyces helicus TaxID=388810 RepID=A0A4P9WP25_9FUNG)

HSP 1 Score: 58.9 bits (141), Expect = 1.450e-8
Identity = 33/81 (40.74%), Postives = 47/81 (58.02%), Query Frame = 1 
Query:    7 FNAATRVATLQHGTCTLAVDATLLPEFDFRIGSLFEFIGTVQ-----VAGLERRVAARAHRNVDGLDMALYENVLRVRRAF 234
            ++  T +A ++HG   L VD TLL +F  R+ SL +FIG ++       G    + AR  RNVDGLD+ L+E  L +RR F
Sbjct:   39 YDVPTNIAVIEHGGERLLVDVTLLGDFPHRLKSLLQFIGELEDHAPHAGGGSVVLRARIVRNVDGLDLKLFEQSLLIRRRF 119
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|353182 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835ZB80_9STRA1.040e-55100.00Telomere-capping, CST complex subunit-domain-conta... [more]
W4H842_9STRA1.670e-1040.51Uncharacterized protein n=1 Tax=Aphanomyces astaci... [more]
D8RL68_SELML4.170e-1048.05Uncharacterized protein (Fragment) n=3 Tax=Selagin... [more]
A0A485LP17_9STRA9.320e-1037.97Aste57867_23900 protein n=1 Tax=Aphanomyces stella... [more]
A0A6G0XY99_9STRA9.320e-1039.24Uncharacterized protein n=1 Tax=Aphanomyces euteic... [more]
A0A024UV78_9STRA1.310e-939.24Uncharacterized protein n=1 Tax=Aphanomyces invada... [more]
A0A1V9YY36_9STRA2.610e-936.71Uncharacterized protein n=1 Tax=Thraustotheca clav... [more]
A0A2K1IND3_PHYPA4.400e-941.56Uncharacterized protein n=2 Tax=Physcomitrium pate... [more]
A0A804Q449_MAIZE8.500e-941.33Uncharacterized protein n=2 Tax=Zea mays TaxID=457... [more]
A0A4P9WP25_9FUNG1.450e-840.74Telomere-capping, CST complex subunit-domain-conta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_148contigContig_148:55761..56940 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|353182|estExt_Genemark1.C_Ctg_1480009
GOsGO:0000723,GO:0000781,GO:0003674,GO:0004857,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005694,GO:0006139,GO:0006259,GO:0006457,GO:0006725,GO:0006807,GO:0006950,GO:0006996,GO:0007275,GO:0008150,GO:0008152,GO:0009266,GO:0009408,GO:0009628,GO:0009889,GO:0009890,GO:0009892,GO:0009987,GO:0010521,GO:0010556,GO:0010558,GO:0010605,GO:0016043,GO:0019219,GO:0019222,GO:0019827,GO:0030234,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0032200,GO:0032501,GO:0032502,GO:0034641,GO:0042592,GO:0043086,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044092,GO:0044183,GO:0044237,GO:0044238,GO:0044260,GO:0044422,GO:0044424,GO:0044427,GO:0044446,GO:0044464,GO:0045934,GO:0046483,GO:0048367,GO:0048519,GO:0048523,GO:0048731,GO:0048856,GO:0050789,GO:0050790,GO:0050794,GO:0050896,GO:0051052,GO:0051053,GO:0051171,GO:0051172,GO:0051276,GO:0051338,GO:0051348,GO:0051972,GO:0051974,GO:0060249,GO:0060255,GO:0065007,GO:0065008,GO:0065009,GO:0071704,GO:0071840,GO:0080090,GO:0090304,GO:0098687,GO:0098727,GO:0098772,GO:1901360,GO:2000112,GO:2000113,GO:2000278,GO:2000279
DescriptionCST complex subunit
COG categoryS
Max annot lvl35493|Streptophyta
EggNOG OGs2BP4Y@1|root,2S1R3@2759|Eukaryota,37VJ9@33090|Viridiplantae,3GJNK@35493|Streptophyta
Evalue2.98e-11
Seed ortholog88036.EFJ26866
Hectar predicted targeting categoryother localisation
TranscriptId353504
TrackFilteredModels1
ProteinId353182
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|353182gene_14527Tribonema minus UTEX_B_3156 geneContig_148 55761..56940 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_14527_2exon_14527_2Tribonema minus UTEX_B_3156 exonContig_148 55761..56009 -
exon_14527_1exon_14527_1Tribonema minus UTEX_B_3156 exonContig_148 56809..56940 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR3_14527UTR3_14527Tribonema minus UTEX_B_3156 three_prime_UTRContig_148 55761..55868 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_14527CDS_14527Tribonema minus UTEX_B_3156 CDSContig_148 56809..56940 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|353182Trimin1|353182|estExt_Genemark1.C_Ctg_1480009Tribonema minus UTEX_B_3156 polypeptideContig_148 55869..56940 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_14527 ID=mRNA_14527|Name=jgi.p|Trimin1|353182|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=381bp|location=Sequence derived from alignment at Contig_148:55761..56940- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGCACTTCAATGCGGCCACGCGAGTTGCGACGCTGCAGCATGGCACCTG
CACCCTCGCAGTGGACGCGACCTTGTTGCCCGAGTTCGACTTCCGGATAG
GATCGCTCTTCGAGTTCATCGGCACCGTGCAGGTGGCGGGTCTCGAGCGC
CGCGTCGCCGCGCGCGCGCACCGCAACGTGGACGGCCTCGACATGGCGCT
GTACGAGAACGTTTTGCGCGTGCGGCGCGCGTTCCTGAGAACGCTCTCCT
CGGAGGGCGGCAGGGCGTCATGATGAGAGCGCGCTGTTGGCGCCGCGCGC
GCTGAGCTCGCACCGTACTTCAACTTCTCAGGCCATACGCCTCCATTCGC
ACAGCGGCAGCGCAGCCGCGACGGCAGCAGC
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protein sequence of jgi.p|Trimin1|353182

>Trimin1|353182|estExt_Genemark1.C_Ctg_1480009 ID=Trimin1|353182|estExt_Genemark1.C_Ctg_1480009|Name=jgi.p|Trimin1|353182|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=91bp
MHFNAATRVATLQHGTCTLAVDATLLPEFDFRIGSLFEFIGTVQVAGLER
RVAARAHRNVDGLDMALYENVLRVRRAFLRTLSSEGGRAS*
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mRNA from alignment at Contig_148:55761..56940-

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_14527 ID=mRNA_14527|Name=jgi.p|Trimin1|353182|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1180bp|location=Sequence derived from alignment at Contig_148:55761..56940- (Tribonema minus UTEX_B_3156 )
ATGCACTTCAATGCGGCCACGCGAGTTGCGACGCTGCAGCATGGCACCTG
CACCCTCGCAGTGGACGCGACCTTGTTGCCCGAGTTCGACTTCCGGATAG
GATCGCTCTTCGAGTTCATCGGCACCGTGCAGGTAGGCTGGGTTTGTGTT
TACTTCAGCATTGCACATTGAGGGGAGAGTACTCTGGCATTCTGAGTTCA
GAGTCAAGCCGAGTGACCGCAACCGGCAATGAATTGGTGGTGTGGAAACC
ATGAGCATGGAACTATTCTCTATCTTGTCTGGTCATGTTCTTGCCAATGG
CGTGTTGCTTCTACATGGACTAGCACAGCAGTTGGGAACGGACAGTCGTC
ATCGAGGAGCCCAGCCATGCTGGTATGGCCACTGCGGCGGCGGCCTCATC
CTGGTGAGATGATCTCAAACGCCGCTGAGCATTGTTGCTGTCACGCAGGA
CGGCGCTCCCGCTGCAGAATGCGGGCACGGAGTCCACTCTGCGCCGTTCA
CATGCACCACTGCTGGTCTTGCGCACAGCAGCAGCGGGCGCATAAAGCTC
ATGAGTACTTTCCAGACAGGCCAGCATAGTCCCTGCTGCCGCGCCCCCCA
CACTGTGGCGCCGTGCTTGTGGCGCGACCGCATTGCTCAATGCCGCAGAC
GTGGACAGCACGAGATGCAGCATCCGCCGCGTGGTGACTGCAACTGCTTG
AAGGGACCCCCTTGACGCCAAGACCCCAATCAGGCCCGCGTCCCGTGCGC
GCAACGCCGCTTTGCGACAAGACGAACGCGGAGAGTGCGCGCCCTACCCC
CACATTGCATAACTTGCTGGGTGGCCACTGCTGCATGCCCGATGCCACCT
CACACAGCAGCGCTCACTCAGCACCATGGCCACAAGCTGACAGTGTGTGC
GCGCGCCGCGCATGTGCTGACGGGCGCGCAGGTGGCGGGTCTCGAGCGCC
GCGTCGCCGCGCGCGCGCACCGCAACGTGGACGGCCTCGACATGGCGCTG
TACGAGAACGTTTTGCGCGTGCGGCGCGCGTTCCTGAGAACGCTCTCCTC
GGAGGGCGGCAGGGCGTCATGATGAGAGCGCGCTGTTGGCGCCGCGCGCG
CTGAGCTCGCACCGTACTTCAACTTCTCAGGCCATACGCCTCCATTCGCA
CAGCGGCAGCGCAGCCGCGACGGCAGCAGC
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Coding sequence (CDS) from alignment at Contig_148:55761..56940-

>mRNA_14527 ID=mRNA_14527|Name=jgi.p|Trimin1|353182|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=273bp|location=Sequence derived from alignment at Contig_148:55761..56940- (Tribonema minus UTEX_B_3156 )
ATGCACTTCAATGCGGCCACGCGAGTTGCGACGCTGCAGCATGGCACCTG
CACCCTCGCAGTGGACGCGACCTTGTTGCCCGAGTTCGACTTCCGGATAG
GATCGCTCTTCGAGTTCATCGGCACCGTGCAGGTGGCGGGTCTCGAGCGC
CGCGTCGCCGCGCGCGCGCACCGCAACGTGGACGGCCTCGACATGGCGCT
GTACGAGAACGTTTTGCGCGTGCGGCGCGCGTTCCTGAGAACGCTCTCCT
CGGAGGGCGGCAGGGCGTCATGA
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