mRNA_14512 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|352563
Unique NamemRNA_14512
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
[Close]
BLAST of jgi.p|Trimin1|352563 vs. uniprot
Match: A0A836CMK4_9STRA (Glutathione transferase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CMK4_9STRA)

HSP 1 Score: 459 bits (1181), Expect = 1.210e-161
Identity = 222/222 (100.00%), Postives = 222/222 (100.00%), Query Frame = 1 
Query:   28 MSDKPTVTLGYWSIRGLAEPLRCLLHHCNVKFNDVTYACGDAPGFDLSDWFNVKHKLGLPFPNLPYLIDEATGLKMTQSDAILRHIGREHNLVGSTPLEKAEVDMLVDLAKDIAMGLTRVVYNPKFSELIGDLSTKTAPAWLQLLSDHLGSKEWFAGSLSIADFVLYERLDVLNHLIPGSVDAHANLKAFMTRFEALPRVAEFVASAEHKSLKFNNKMAVWQ 693
            MSDKPTVTLGYWSIRGLAEPLRCLLHHCNVKFNDVTYACGDAPGFDLSDWFNVKHKLGLPFPNLPYLIDEATGLKMTQSDAILRHIGREHNLVGSTPLEKAEVDMLVDLAKDIAMGLTRVVYNPKFSELIGDLSTKTAPAWLQLLSDHLGSKEWFAGSLSIADFVLYERLDVLNHLIPGSVDAHANLKAFMTRFEALPRVAEFVASAEHKSLKFNNKMAVWQ
Sbjct:    1 MSDKPTVTLGYWSIRGLAEPLRCLLHHCNVKFNDVTYACGDAPGFDLSDWFNVKHKLGLPFPNLPYLIDEATGLKMTQSDAILRHIGREHNLVGSTPLEKAEVDMLVDLAKDIAMGLTRVVYNPKFSELIGDLSTKTAPAWLQLLSDHLGSKEWFAGSLSIADFVLYERLDVLNHLIPGSVDAHANLKAFMTRFEALPRVAEFVASAEHKSLKFNNKMAVWQ 222
[Close]
BLAST of jgi.p|Trimin1|352563 vs. uniprot
Match: A0A835Z2Z1_9STRA (Glutathione S-transferase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z2Z1_9STRA)

HSP 1 Score: 229 bits (584), Expect = 7.530e-71
Identity = 111/208 (53.37%), Postives = 143/208 (68.75%), Query Frame = 1 
Query:   40 PTVTLGYWSIRGLAEPLRCLLHHCNVKFNDVTYACGDAPGFDLSDWFNVKHKLGLPFPNLPYLIDEATGLKMTQSDAILRHIGREHNLVGSTPLEKAEVDMLVDLAKDIAMGLTRVVYNP--KFSELIGDLSTKTAPAWLQLLSDHLGSKEWFAGSLSIADFVLYERLDVLNHLIPGSVDAHANLKAFMTRFEALPRVAEFVASAEHK 657
            P V LGYW  RG+AE LRCLL +CNVKF +  Y        ++  W   +H LGLPFPNLPY ID  +GLK+TQS+AIL+H+GR H LVG TP + AEV++LV+LA D+ M L+RV+  P  K+  L  + +  T PAWL  L  +LG+KEW  G+LS ADFV+Y+RL VLN  +PG VDA A LKA+  RF  LPRV +++ASA H+
Sbjct:   12 PNVILGYWDARGVAEALRCLLTYCNVKFTEKVYT-------EMPQWQKDEHALGLPFPNLPYFIDSRSGLKLTQSNAILQHVGRSHGLVGKTPEQMAEVEVLVNLAFDMLMILSRVIIAPPDKYPRLYAEFAKNTVPAWLDQLETYLGTKEWLVGTLSTADFVIYDRLSVLNRYLPGCVDARAVLKAYAERFRTLPRVCDYLASAAHR 212
[Close]
BLAST of jgi.p|Trimin1|352563 vs. uniprot
Match: A0A835YVD5_9STRA (Glutathione S-transferase Mu 3-like protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YVD5_9STRA)

HSP 1 Score: 205 bits (522), Expect = 1.040e-61
Identity = 106/216 (49.07%), Postives = 138/216 (63.89%), Query Frame = 1 
Query:   49 TLGYWSIRGLAEPLRCLLHHCNVKFNDVTYACGDAPGFDLSDWFNVKHKLGLPFPNLPYLIDEATGLKMTQSDAILRHIGREHNLVGSTPLEKAEVDMLVDLAKDIAMGLTRVVYNP--KFSELIGDLSTKTAPAWLQLLSDHLGSKEWFAGSLSIADFVLYERLDVLNHLIPGSVDAHANLKAFMTRFEALPRVAEFVASAEHKSLKFNNKMAVW 690
            TLGY   RG+AEP+RCLLH+CNV FND  Y        D + W   KH LGLPFPNLPY      G+K+TQ+ A+L+HIGRE  LVG +P + AE+DML  +A D+A GL  + Y+   ++ E + +   K  P WL  L  +LG+K+WFAG LS ADFVLY+RL V N   PG VD+HA+LK FM RF  L  V+E++AS EH + +     + W
Sbjct:   12 TLGYMDARGIAEPIRCLLHYCNVNFNDKRYP-------DKAAWLREKHALGLPFPNLPY-----AGVKLTQTTAVLQHIGREQGLVGKSPAQVAEIDMLTHVALDMANGLICLCYSTPDQYHENLPNF-IKQIPTWLDPLDAYLGTKDWFAGELSTADFVLYDRLSVFNAFQPGCVDSHASLKGFMERFRGLKVVSEYLASPEHMTRRVFGPESNW 214
[Close]
BLAST of jgi.p|Trimin1|352563 vs. uniprot
Match: A0A401PDJ7_SCYTO (Glutathione transferase n=3 Tax=Galeoidea TaxID=119195 RepID=A0A401PDJ7_SCYTO)

HSP 1 Score: 202 bits (513), Expect = 2.340e-60
Identity = 103/216 (47.69%), Postives = 136/216 (62.96%), Query Frame = 1 
Query:   46 VTLGYWSIRGLAEPLRCLLHHCNVKFNDVTYACGDAPGFDLSDWFNVKHKLGLPFPNLPYLIDEATGLKMTQSDAILRHIGREHNLVGSTPLEKAEVDMLVDLAKDIAMGLTRVVYNPKFSELIGDLSTKTAPAWLQLLSDHLGSKEWFAGS-LSIADFVLYERLDVLNHLIPGSVDAHANLKAFMTRFEALPRVAEFVASAEHKSLKFNNKMAVW 690
            + LGYW IRGLA+P+R LL +C  ++ +  Y+CG+AP +D S WF+VK KLGL FPNLPYL D    +K+TQS+AI+R+I R+H LVG T  EK  VDML + A D  MG+ R+ YNP F  L  +   K  P  L+  SD LG K WFAG  ++  DF++YE  D    L P  +D   NLK F+  FEAL ++A ++ S       FNNK+A W
Sbjct:    3 MKLGYWDIRGLAQPIRLLLEYCGTEYEEQFYSCGEAPNYDKSCWFDVKPKLGLDFPNLPYLFDG--DVKITQSNAIMRYIARKHKLVGETEDEKVRVDMLENQAMDFRMGIVRLAYNPDFKNLKAEY-LKGLPNLLKQFSDFLGKKPWFAGDKITFVDFLMYELFDEHRVLEPKCLDEFKNLKDFVQHFEALEKIAAYLKSDRFMKGPFNNKVAKW 215
[Close]
BLAST of jgi.p|Trimin1|352563 vs. uniprot
Match: A0A1S3IRC0_LINUN (Glutathione transferase n=2 Tax=Lingula unguis TaxID=7574 RepID=A0A1S3IRC0_LINUN)

HSP 1 Score: 199 bits (506), Expect = 2.720e-59
Identity = 104/220 (47.27%), Postives = 137/220 (62.27%), Query Frame = 1 
Query:   46 VTLGYWSIRGLAEPLRCLLHHCNVKFNDVTYACGDAPGFDLSDWFNVKHKLGLPFPNLPYLIDEATGLKMTQSDAILRHIGREHNLVGSTPLEKAEVDMLVDLAKDIAMGLTRVVYNPKFSELIGDLSTKTAPAWLQLLSDHLGSKEWFAGS-LSIADFVLYERLDVLNHLIPGSVDAHANLKAFMTRFEALPRVAEFVASAEHKSLKFNNKMAVWQ*TA 702
            + LGYWSIRGLA+P+R LL++   +F D  Y CG AP F+   W +VKH LGLP+PNLPYLID     K+ QS+AILR+IGR+HNL G+T  E+   D++ + + D   G  R+ Y  KF E + +      P  L+   + LG  +WFAG+ L+ ADF +YE LD      PG +DA+  L AFM RFEA   VA+ ++S E K L  NNKMA W  TA
Sbjct:    3 IVLGYWSIRGLAQPIRLLLNYVGEEFEDRKYECGPAPDFNREAWTSVKHTLGLPYPNLPYLIDGDR--KVVQSNAILRYIGRKHNLCGTTEEERIRADIMENQSMDFRNGFVRLCYG-KFDEAVKEAYLSALPGTLKQFEEFLGDNQWFAGANLTFADFPMYELLDQHRLFAPGCLDAYPKLTAFMKRFEAQEPVAKCISSEEFKKLPVNNKMARWGGTA 219
[Close]
BLAST of jgi.p|Trimin1|352563 vs. uniprot
Match: A0A401SUD7_CHIPU (Glutathione transferase n=3 Tax=Orectolobiformes TaxID=30503 RepID=A0A401SUD7_CHIPU)

HSP 1 Score: 196 bits (499), Expect = 2.780e-58
Identity = 100/216 (46.30%), Postives = 137/216 (63.43%), Query Frame = 1 
Query:   46 VTLGYWSIRGLAEPLRCLLHHCNVKFNDVTYACGDAPGFDLSDWFNVKHKLGLPFPNLPYLIDEATGLKMTQSDAILRHIGREHNLVGSTPLEKAEVDMLVDLAKDIAMGLTRVVYNPKFSELIGDLSTKTAPAWLQLLSDHLGSKEWFAGS-LSIADFVLYERLDVLNHLIPGSVDAHANLKAFMTRFEALPRVAEFVASAEHKSLKFNNKMAVW 690
            +TLGYW IRGLA+P+R LL +    + +  Y+CG+AP +D + WF+VK+ LGL FPNLPYLI+    +K+TQS+AI+R+I R+HNLVG T  E+  VDML + + D  MG  R+ YNP F +L GD   K  P  L+  SD LG + WFAG  ++  DF++YE LD         ++   NLK F+  FEAL ++A ++ S       FNNKMA W
Sbjct:    3 MTLGYWDIRGLAQPIRLLLEYTGTAYEEKLYSCGEAPNYDKACWFDVKYTLGLDFPNLPYLING--DVKITQSNAIMRYIARKHNLVGETEDEQIRVDMLENQSMDFRMGFVRLAYNPDFEDLKGDY-LKGLPNLLKQFSDFLGKRPWFAGDKITFVDFLMYELLDEHRVFESKCLEEFQNLKDFVDHFEALEKIAAYMKSDRFMKGPFNNKMAKW 215
[Close]
BLAST of jgi.p|Trimin1|352563 vs. uniprot
Match: F7E9W1_ORNAN (Glutathione transferase n=2 Tax=Monotremata TaxID=9255 RepID=F7E9W1_ORNAN)

HSP 1 Score: 196 bits (498), Expect = 4.180e-58
Identity = 103/216 (47.69%), Postives = 134/216 (62.04%), Query Frame = 1 
Query:   46 VTLGYWSIRGLAEPLRCLLHHCNVKFNDVTYACGDAPGFDLSDWFNVKHKLGLPFPNLPYLIDEATGLKMTQSDAILRHIGREHNLVGSTPLEKAEVDMLVDLAKDIAMGLTRVVYNPKFSELIGDLSTKTAPAWLQLLSDHLGSKEWFAGS-LSIADFVLYERLDVLNHLIPGSVDAHANLKAFMTRFEALPRVAEFVASAEHKSLKFNNKMAVW 690
            +TLGYW IRGLA  +R LL + +  + +  Y+CG+AP +D S W N K KLGL FPNLPYLID  T  K+TQS+AILR+I R+HNL G T  E+  VDML   A D  M L RV Y+P F +L      +  P  ++L S  LG ++WFAG  L+ ADF+LY+ LD      P  +D  +NL  F+ RFEAL ++A ++ S     L  NNKMA W
Sbjct:    3 MTLGYWDIRGLAHAIRLLLEYTDSAYEEKRYSCGEAPDYDRSQWLNEKFKLGLDFPNLPYLIDGNT--KLTQSNAILRYIARKHNLCGETEEERVRVDMLESQAMDFRMQLVRVCYSPDFEKLRPGY-LEQLPVQMKLFSQFLGKRKWFAGDKLTFADFLLYDVLDQNRMFEPKCLDEFSNLSEFLARFEALEKIAAYMRSDRFIKLPINNKMAKW 215
[Close]
BLAST of jgi.p|Trimin1|352563 vs. uniprot
Match: A0A6P7ZFZ1_9AMPH (Glutathione transferase n=1 Tax=Microcaecilia unicolor TaxID=1415580 RepID=A0A6P7ZFZ1_9AMPH)

HSP 1 Score: 196 bits (497), Expect = 5.730e-58
Identity = 100/216 (46.30%), Postives = 135/216 (62.50%), Query Frame = 1 
Query:   46 VTLGYWSIRGLAEPLRCLLHHCNVKFNDVTYACGDAPGFDLSDWFNVKHKLGLPFPNLPYLIDEATGLKMTQSDAILRHIGREHNLVGSTPLEKAEVDMLVDLAKDIAMGLTRVVYNPKFSELIGDLSTKTAPAWLQLLSDHLGSKEWFAGS-LSIADFVLYERLDVLNHLIPGSVDAHANLKAFMTRFEALPRVAEFVASAEHKSLKFNNKMAVW 690
            + LGYW+IRGLA P+R LL +   ++ +  Y CG+AP +D S+W NVK KLGL FPN+PYLID    +K+TQS AILR+I R+H L G +  E   VDM+++ A D  MGL  + YNPKF  L G     T P  L+L S  L  ++WFAG  ++  DFV+Y+ LD    L P  +D   NLK+F+ R EAL ++A ++ S  +     NNKMA W
Sbjct:    3 MILGYWNIRGLAHPIRLLLEYTGTEYKEKLYNCGEAPDYDKSEWLNVKEKLGLDFPNIPYLIDGE--IKITQSHAILRYIARKHKLCGESEEEMIRVDMVLNQALDFRMGLVTLAYNPKFESLKGPY-LDTLPGTLKLFSKFLCERKWFAGEKITFVDFVMYDVLDQHRILEPKCLDQFKNLKSFLDRIEALDKIAAYMKSDRYIKTPINNKMAKW 215
[Close]
BLAST of jgi.p|Trimin1|352563 vs. uniprot
Match: A0A670J5A1_PODMU (Glutathione transferase n=4 Tax=Lacertinae TaxID=162266 RepID=A0A670J5A1_PODMU)

HSP 1 Score: 194 bits (493), Expect = 2.360e-57
Identity = 102/217 (47.00%), Postives = 133/217 (61.29%), Query Frame = 1 
Query:   43 TVTLGYWSIRGLAEPLRCLLHHCNVKFNDVTYACGDAPGFDLSDWFNVKHKLGLPFPNLPYLIDEATGLKMTQSDAILRHIGREHNLVGSTPLEKAEVDMLVDLAKDIAMGLTRVVYNPKFSELIGDLSTKTAPAWLQLLSDHLGSKEWFAGS-LSIADFVLYERLDVLNHLIPGSVDAHANLKAFMTRFEALPRVAEFVASAEHKSLKFNNKMAVW 690
            T+ LGYW IRGLA  +R LL + +  F D  Y+CG+AP +D S WFN K KLGL FPNLPYLID  T  K+TQS+AILR+I R+H L G T  E   VDML +   D  M L  VVYNP F +L      +  P  L+L S  LG ++WFAG  ++  DF++Y+ LD      P  +D   NL+ F++RFEAL ++A ++ S+       NNKMA W
Sbjct:    2 TMILGYWDIRGLAHSIRLLLAYTDTPFEDKFYSCGEAPDYDKSQWFNEKEKLGLDFPNLPYLIDGKT--KLTQSNAILRYIARKHKLCGETEEEIVRVDMLENQVMDFRMSLVMVVYNPDFEKLKPGY-LEQLPGKLKLFSKFLGDRKWFAGDKITFVDFLMYDVLDQNRMFEPKCLDQFKNLQDFVSRFEALEKIAAYMKSSRFMKTPINNKMAKW 215
[Close]
BLAST of jgi.p|Trimin1|352563 vs. uniprot
Match: A0A0X9Q3U1_ANABR (Glutathione transferase n=1 Tax=Anadara broughtonii TaxID=148819 RepID=A0A0X9Q3U1_ANABR)

HSP 1 Score: 193 bits (491), Expect = 4.020e-57
Identity = 98/216 (45.37%), Postives = 140/216 (64.81%), Query Frame = 1 
Query:   49 TLGYWSIRGLAEPLRCLLHHCNVKFNDVTYACGDAPGFDLSDWFNVKHKLGLPFPNLPYLIDEATGLKMTQSDAILRHIGREHNLVGSTPLEKAEVDMLVDLAKDIAMGLTRVVYNPKFSELIGDLSTKTAPAWLQLLSDHLGSKEWFAG-SLSIADFVLYERLDVLNHLIPGSVDAHANLKAFMTRFEALPRVAEFVASAEHKSLKFNNKMAVWQ 693
            TLGYW IRGLA+P+R LLH+    F DV Y  GDAP +    WF VK  LGLP PNLPY ID    +K+TQ++AILR+IGR+HNL+G+T  E+   D+++D A D+   +  +VYN ++ +L  D   K  P+ L++  + LG K WFAG ++++ DF +YE LD L  + PG VD    L  F+ RFEALP++  F++S++      NNK+A ++
Sbjct:    3 TLGYWKIRGLAQPIRLLLHYVGQDFEDVQYEQGDAPDYSRDCWFKVKFTLGLPIPNLPYYIDG--DIKITQTNAILRYIGRKHNLLGTTAAEQVNNDVMMDQAMDLRNTIVGIVYNKEYEKLKIDYF-KNLPSRLEVFENFLGEKPWFAGQNVTVCDFHIYELLDQLKIMEPGCVDKFTKLTTFIGRFEALPKIKAFLSSSQCIKRPINNKIATFK 215
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|352563 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A836CMK4_9STRA1.210e-161100.00Glutathione transferase n=1 Tax=Tribonema minus Ta... [more]
A0A835Z2Z1_9STRA7.530e-7153.37Glutathione S-transferase n=1 Tax=Tribonema minus ... [more]
A0A835YVD5_9STRA1.040e-6149.07Glutathione S-transferase Mu 3-like protein n=1 Ta... [more]
A0A401PDJ7_SCYTO2.340e-6047.69Glutathione transferase n=3 Tax=Galeoidea TaxID=11... [more]
A0A1S3IRC0_LINUN2.720e-5947.27Glutathione transferase n=2 Tax=Lingula unguis Tax... [more]
A0A401SUD7_CHIPU2.780e-5846.30Glutathione transferase n=3 Tax=Orectolobiformes T... [more]
F7E9W1_ORNAN4.180e-5847.69Glutathione transferase n=2 Tax=Monotremata TaxID=... [more]
A0A6P7ZFZ1_9AMPH5.730e-5846.30Glutathione transferase n=1 Tax=Microcaecilia unic... [more]
A0A670J5A1_PODMU2.360e-5747.00Glutathione transferase n=4 Tax=Lacertinae TaxID=1... [more]
A0A0X9Q3U1_ANABR4.020e-5745.37Glutathione transferase n=1 Tax=Anadara broughtoni... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_123contigContig_123:407456..411766 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|352563|estExt_Genemark1.C_Ctg_1230052
KEGG TC1.A.12.2.2,1.A.12.3.2
BRITEko00000,ko00001,ko01000,ko02000
KEGG rclassRC00004,RC00069,RC00840,RC00948,RC01704,RC01705,RC01706,RC01758,RC01759,RC01765,RC01767,RC01769,RC02243,RC02527,RC02939,RC02940,RC02942,RC02943,RC02944
KEGG ReactionR03522,R07002,R07003,R07004,R07023,R07024,R07025,R07026,R07069,R07070,R07083,R07084,R07091,R07092,R07093,R07094,R07100,R07113,R07116,R08280,R09409,R11905
KEGG Pathwayko00480,ko00980,ko00982,ko00983,ko01524,ko05200,ko05204,ko05225,ko05418,map00480,map00980,map00982,map00983,map01524,map05200,map05204,map05225,map05418
KEGG koko:K00799
EC2.5.1.18
GOsGO:0001101,GO:0003674,GO:0003824,GO:0004364,GO:0005488,GO:0005496,GO:0005515,GO:0005575,GO:0005576,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005886,GO:0006518,GO:0006575,GO:0006725,GO:0006749,GO:0006790,GO:0006805,GO:0006807,GO:0006950,GO:0007568,GO:0008150,GO:0008152,GO:0008289,GO:0009056,GO:0009058,GO:0009410,GO:0009605,GO:0009607,GO:0009611,GO:0009617,GO:0009636,GO:0009719,GO:0009725,GO:0009987,GO:0010033,GO:0010035,GO:0010038,GO:0010226,GO:0010243,GO:0010288,GO:0014070,GO:0016020,GO:0016151,GO:0016740,GO:0016765,GO:0018916,GO:0019899,GO:0019900,GO:0019901,GO:0032502,GO:0032991,GO:0033218,GO:0033554,GO:0033594,GO:0033595,GO:0034641,GO:0035690,GO:0042178,GO:0042221,GO:0042277,GO:0042493,GO:0042537,GO:0042802,GO:0042803,GO:0043167,GO:0043168,GO:0043169,GO:0043200,GO:0043207,GO:0043209,GO:0043295,GO:0043603,GO:0044237,GO:0044248,GO:0044249,GO:0044272,GO:0044421,GO:0044424,GO:0044444,GO:0044464,GO:0045171,GO:0045471,GO:0046677,GO:0046872,GO:0046914,GO:0046982,GO:0046983,GO:0048037,GO:0048678,GO:0050896,GO:0051186,GO:0051410,GO:0051704,GO:0051707,GO:0051716,GO:0070458,GO:0070887,GO:0071310,GO:0071407,GO:0071466,GO:0071704,GO:0071944,GO:0072341,GO:0080184,GO:0097159,GO:0097237,GO:0097305,GO:0097327,GO:0098754,GO:1900750,GO:1901360,GO:1901564,GO:1901566,GO:1901576,GO:1901654,GO:1901681,GO:1901685,GO:1901687,GO:1901698,GO:1901700,GO:1902168,GO:1905395,GO:1990748
Preferred nameGSTM1
Descriptionglutathione transferase activity
COG categoryO
Max annot lvl33208|Metazoa
EggNOG OGsKOG1695@1|root,KOG1695@2759|Eukaryota,38YPE@33154|Opisthokonta,3BFCR@33208|Metazoa,3CZP0@33213|Bilateria
Evalue2.47e-58
Seed ortholog9365.XP_007529435.1
Hectar predicted targeting categoryother localisation
TranscriptId352885
TrackFilteredModels1
ProteinId352563
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|352563gene_14512Tribonema minus UTEX_B_3156 geneContig_123 407456..411766 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|352563Trimin1|352563|estExt_Genemark1.C_Ctg_1230052Tribonema minus UTEX_B_3156 polypeptideContig_123 408628..411439 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_14512_1exon_14512_1Tribonema minus UTEX_B_3156 exonContig_123 407456..407481 +
exon_14512_2exon_14512_2Tribonema minus UTEX_B_3156 exonContig_123 408627..408837 +
exon_14512_3exon_14512_3Tribonema minus UTEX_B_3156 exonContig_123 409660..409824 +
exon_14512_4exon_14512_4Tribonema minus UTEX_B_3156 exonContig_123 411146..411766 +


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR5_14512UTR5_14512Tribonema minus UTEX_B_3156 five_prime_UTRContig_123 407456..407481 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_14512CDS_14512Tribonema minus UTEX_B_3156 CDSContig_123 408628..408837 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR3_14512UTR3_14512Tribonema minus UTEX_B_3156 three_prime_UTRContig_123 411440..411766 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_14512 ID=mRNA_14512|Name=jgi.p|Trimin1|352563|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1023bp|location=Sequence derived from alignment at Contig_123:407456..411766+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
AGAACGGGTTGAAACGACAGGCAAAGGATGTCAGACAAGCCTACCGTGAC
GCTCGGCTACTGGTCCATCCGCGGCCTTGCTGAGCCGCTGAGATGTCTCC
TGCACCACTGCAATGTCAAGTTCAACGATGTGACGTACGCATGTGGCGAC
GCCCCTGGCTTTGACCTTAGCGACTGGTTCAACGTCAAGCACAAGCTGGG
ACTTCCCTTCCCCAACTTGCCGTACCTGATTGATGAGGCCACTGGCCTCA
AGATGACTCAGAGCGATGCAATCCTGAGGCACATTGGACGTGAGCACAAC
TTGGTGGGCAGTACCCCCCTGGAGAAGGCTGAGGTGGATATGCTGGTGGA
CTTGGCCAAGGACATTGCCATGGGCCTCACCAGAGTGGTGTACAACCCCA
AGTTCAGTGAACTCATTGGGGACCTCTCCACCAAGACCGCCCCTGCCTGG
CTGCAGCTGCTGTCTGACCACCTCGGCTCCAAAGAGTGGTTTGCCGGCTC
GCTGAGCATCGCTGACTTTGTCCTTTACGAGAGGCTCGACGTTCTCAATC
ACCTCATTCCTGGCAGCGTTGACGCGCATGCGAACCTCAAGGCGTTCATG
ACACGCTTCGAGGCACTGCCGCGGGTGGCGGAGTTCGTAGCATCTGCCGA
GCACAAGAGCCTCAAGTTCAACAACAAGATGGCCGTGTGGCAGTAGACTG
CCTAGTGACGTCCCGTTCAGCATTCACACACACTCGTCAACACACGGTAG
ATGCAAAACAAACACATGAGTGTGCGCAGCGATACTTCTACGCATGTCAA
AGTTGAAGTTTAACGTGGATAGGCTAAGTGCAGTGCAACAGGACAAAGCG
CGGGTTTGCGCTGGCTATTGATGGTACCTGCAGGCAACTGCATGGTGCTG
TGAGCCAGCGTGCGATGGTTGGTGGAACTCCACATATCACAACCGAGGTA
GAAAGAGGTGGCAGAACATCTCTGCCACCACTCCCCCCCTTCGTTGCAGC
AACATCAACAATGAAGATCGTGC
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protein sequence of jgi.p|Trimin1|352563

>Trimin1|352563|estExt_Genemark1.C_Ctg_1230052 ID=Trimin1|352563|estExt_Genemark1.C_Ctg_1230052|Name=jgi.p|Trimin1|352563|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=223bp
MSDKPTVTLGYWSIRGLAEPLRCLLHHCNVKFNDVTYACGDAPGFDLSDW
FNVKHKLGLPFPNLPYLIDEATGLKMTQSDAILRHIGREHNLVGSTPLEK
AEVDMLVDLAKDIAMGLTRVVYNPKFSELIGDLSTKTAPAWLQLLSDHLG
SKEWFAGSLSIADFVLYERLDVLNHLIPGSVDAHANLKAFMTRFEALPRV
AEFVASAEHKSLKFNNKMAVWQ*
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mRNA from alignment at Contig_123:407456..411766+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_14512 ID=mRNA_14512|Name=jgi.p|Trimin1|352563|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=4311bp|location=Sequence derived from alignment at Contig_123:407456..411766+ (Tribonema minus UTEX_B_3156 )
AGAACGGGTTGAAACGACAGGCAAAGGTGAGAGCAGTCGCTGCAAAGCCA
TACGTAGCCTGTGGAGATCATGACATGGCTGGGTTCGAGCAACACGTGTG
ACGATCCCGTGCGATCTGATCTTCCCTTCGAACGAACTGGAAAGCAAAGA
CCTCAGCGAGTAATGCGCAGTGTAGCGTCAGGTGCAGACGCCGGCACCAG
CAATACTTGCAGGGACTCATTGACCAGCGCCGCTAGCTTTGCCTGGGCTG
GAGGGAGACCAAATTCTGGACTGCACAGCGCTGAGTACAGCAACGCTGCG
CTTGCCTTACTTGATTGGACACGAAAGAGTGTGTACTGCATCACAGTTCA
TTCATGTTGTACCTAGTTTTCGACGTAACCCGGGCTGGTCCACGTGTACA
GCGTCGGACTGACCAGCGGGCAGTGTTCTGGAGCTTTGCATTCGGCTTTG
TGCCGTATTGCCAAAGCTGCGTATTGCACAGAACTGTGTATGCAGTACGT
TGCAATCTATGCACCGTGTAGGAGTAGGCACATCATTTTGTGCCTGATTG
CAAGCTGCGTTCATGCGCCCGGTCAGTGGCTCTTACAGCTTGTGCTGCTG
TGATTTGCCAAGCTGCGTGGCACCCACCTTGTCAGTGCATCAGAGATGTC
GCAGTAGGCACCTGCGACAGCAACTCGGCACTTTCGTATTTCGTCAGTAG
CTGCAGCCTGACTCACTCCATCACTCTGATCAGCGTTGTTCGTGGTGCAC
TCTTTAATGTCTTCAACAAGCTGGCGCCCACACCACTATTACGGCTGTGT
GCGCACGTTTCATAGCTCAATTCCTGTTGAGCACACTTCATCGTTGGGTA
TATTCTAGCATGTGCAATTGTCTGTGCTCAAACAGCAGGCACACATTGTG
GCTGATTTCAGGTCTTGAGATCTAGCGAACGTACTTTTCAGGCTAGCGAA
CGTACTTTTCAGGCGGGATACCTACGTGTCAGCTACAACACAGCAGATCA
GGCAGTACGCATAACATGTAGTACCCCTTGTTCACGGCTGGGCCTACTGG
GGTATCTGATCTCATTTGGTCCCCTACTCTTGCCCGCAGTGTCATTCAAA
CATAATGCGTGACGACACGTCTGCTGCAACTCTCATCTCACCATGTGTGC
TCGCCACATGTCCTCTTGCAGGATGTCAGACAAGCCTACCGTGACGCTCG
GCTACTGGTCCATCCGCGGCCTTGCTGAGCCGCTGAGATGTCTCCTGCAC
CACTGCAATGTCAAGTTCAACGATGTGACGTACGCATGTGGCGACGCCCC
TGGCTTTGACCTTAGCGACTGGTTCAACGTCAAGCACAAGCTGGGACTTC
CCTTCCCCAACTTGCCGTACCTGATTGATGAGGTGACCATGTGCCTGATG
ATGCAACGGATGATGATTAGCCAGTCTATGACATTGAGTTGTAGATTTAC
TTGTCGAAAACCAGCAGAAGACCTTCTGCAGGATGGCGATCATTCACATG
CACCCCCTGCTGCGCGTCGCATCTGACCAGTGAGATTACCAGCTCAGCCT
GGTCATTCTTTTGAATCGTTTGGAACATGTGCGGCGGTGGTCTGAGTGAA
CTCCGTGAACGGAGGCGGGACAAGTGCTTTGTTCTTGTTTTATTGAAAGT
ACGCAGCAGCAGCGCTCAACTCGCATCAACCTATGTCAGTGATGCCGCTT
CGTGCACTTGACTGACGCTCACGGCTGTACTTTCACAAGGCTCTCAGGGC
ACATACACTGTAGTGCCGCAGTGATAAACCTCCAGTGCGTGAATGGTGTG
CAGCATCAGCAGAGCCACCTCACACATATATTCCGCCGCTATTGTCACCT
GGTGCTTACTGGTCGTGGACTTGAGTTGAGTGACAAAGGCAGCAGCAGCA
TCATCATCAGCGCAACGCTAAGCTGCTGCGCCCTTGATGCTCTGATCCAC
TTGTCGTTCTATTTGTATCCCTATCCTCACTGTCCACTGCGCTTGCTCTG
CAACCTACTTTGCTCCGCTGAGGTTTGTATCCTTACTGTAGCCCTATTTT
CCCGATGGTTCTGCAACAGCTGGCTTCAGCAGCAGGCCAGGTGCTGCAGT
GTTTTTATTTGCTTTGCAATTAGATTGTGTGTGCATGTGCTCAGCATGGA
GCGCTCATTGACACAACATCAACTTCAACTTGTTGCACCCGTCGCTCGGT
GCAGGCCACTGGCCTCAAGATGACTCAGAGCGATGCAATCCTGAGGCACA
TTGGACGTGAGCACAACTTGGTGGGCAGTACCCCCCTGGAGAAGGCTGAG
GTGGATATGCTGGTGGACTTGGCCAAGGACATTGCCATGGGCCTCACCAG
AGTGGTGTACAACCCCAAGGTGCGGAGCAACTGAAGTACTATACTTCAGA
GTAGTATAGAGTCTGATGGGTTGAGAGGTATTGAAGGATTGGTGTTGTTA
GATGCACTTACTTGCGCCGGAGGCGTTGCCAGAGCAGAGCAATTCATGAG
CCATTCGTTGACTGTGCTTAATGACTTTGTCTGTAGAGGCATCACACGAT
TTTTGTAATCATGGCCTTGGTAGAATTCCAAGGTGCTTGGACAGCCTTCT
GCATTACCTAACCCTACGCCTAACCCTAACCTCAGCAGAGGCGTTTCAGT
ACACAGTGTAGACCGTTTGTTACTGTGCAGTTGTGCTCAAGAAAATAATT
GAAGGACTGATTGAGTGCATGATGACAACATCATGACTGGAATCATTCAT
GACTGTGGTACAAGTAATGTATGTATTGCAGGCGGTTGACATTGGCATCC
ATCGTGCGTTGCCAACAAGCCAGTCCACCATCATTCGCATGACTCAGAAG
CTGCTTCCATCCACACACAGATATCGCCAAGGCTCTCACTGTCACGGGCA
ATCTCAGTGGGCGCAAACGCACTCATTACGGTGTTGATCAGCACTGTGTT
GCAACTTTCAACTTGAAGCACTTTCATATGTGAGCATCCAGTTAACTCAC
TTCTATTGCTTGAAGTGTGTTGAGTATCAATCAAAGTTCAATCATGCCAA
GTCTAGTTTTAAACTCAACCCCCTAGGTTTGCGAGCTGGCAACTGTTGAG
TGTGAACATGCCTTTTGTGACGCCAGAACAGAGCATGCGCAACTGTGTGA
CAGCGAAGGACATTGATACTTCGAAGTACATGGCTCTTTCCTCACTTGCC
TTGGTGCAATGTGCAGCTCTGTGAACCCACCCATCAGGCACGTCTAGGGG
TGCGACCATGAACCCAAGACCGAATCCTAACCCTCACTTAAGTACAGCAG
CTGCCTGACTGTGGCAGCTCACGGCACGCTTCAAAGCTAAGCCTCCTGTT
TGCAGGCCAGCTCTGACACGACCTCTTTGGCGCCCTATTGTACCATGTGC
AGTACACTTACACAGTACTGTATTGCACAGTTCTGCATTGTGTCATTGTA
AATTGCACAGTTCTGCACTGCGCCATTGTATATGCTCATCAATGGCCTCT
ACCGGCCACTACCACCACGCCTTCACGGCTATGAATGCTGCCATCAACCA
TCGTGTCTGAAGGCGCTGCCGATGAGCACTCTGCCTCAACCAAACGTATT
CCCCTTCACTCCACCGCCGCGCTTTCCAACAACAAGCACTTGTGTGAAAT
CAGCATTGTACACTTTTCCGCGCCTCTCTGCCGCACACAGTTCAGTGAAC
TCATTGGGGACCTCTCCACCAAGACCGCCCCTGCCTGGCTGCAGCTGCTG
TCTGACCACCTCGGCTCCAAAGAGTGGTTTGCCGGCTCGCTGAGCATCGC
TGACTTTGTCCTTTACGAGAGGCTCGACGTTCTCAATCACCTCATTCCTG
GCAGCGTTGACGCGCATGCGAACCTCAAGGCGTTCATGACACGCTTCGAG
GCACTGCCGCGGGTGGCGGAGTTCGTAGCATCTGCCGAGCACAAGAGCCT
CAAGTTCAACAACAAGATGGCCGTGTGGCAGTAGACTGCCTAGTGACGTC
CCGTTCAGCATTCACACACACTCGTCAACACACGGTAGATGCAAAACAAA
CACATGAGTGTGCGCAGCGATACTTCTACGCATGTCAAAGTTGAAGTTTA
ACGTGGATAGGCTAAGTGCAGTGCAACAGGACAAAGCGCGGGTTTGCGCT
GGCTATTGATGGTACCTGCAGGCAACTGCATGGTGCTGTGAGCCAGCGTG
CGATGGTTGGTGGAACTCCACATATCACAACCGAGGTAGAAAGAGGTGGC
AGAACATCTCTGCCACCACTCCCCCCCTTCGTTGCAGCAACATCAACAAT
GAAGATCGTGC
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Coding sequence (CDS) from alignment at Contig_123:407456..411766+

>mRNA_14512 ID=mRNA_14512|Name=jgi.p|Trimin1|352563|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=669bp|location=Sequence derived from alignment at Contig_123:407456..411766+ (Tribonema minus UTEX_B_3156 )
ATGTCAGACAAGCCTACCGTGACGCTCGGCTACTGGTCCATCCGCGGCCT
TGCTGAGCCGCTGAGATGTCTCCTGCACCACTGCAATGTCAAGTTCAACG
ATGTGACGTACGCATGTGGCGACGCCCCTGGCTTTGACCTTAGCGACTGG
TTCAACGTCAAGCACAAGCTGGGACTTCCCTTCCCCAACTTGCCGTACCT
GATTGATGAGGCCACTGGCCTCAAGATGACTCAGAGCGATGCAATCCTGA
GGCACATTGGACGTGAGCACAACTTGGTGGGCAGTACCCCCCTGGAGAAG
GCTGAGGTGGATATGCTGGTGGACTTGGCCAAGGACATTGCCATGGGCCT
CACCAGAGTGGTGTACAACCCCAAGTTCAGTGAACTCATTGGGGACCTCT
CCACCAAGACCGCCCCTGCCTGGCTGCAGCTGCTGTCTGACCACCTCGGC
TCCAAAGAGTGGTTTGCCGGCTCGCTGAGCATCGCTGACTTTGTCCTTTA
CGAGAGGCTCGACGTTCTCAATCACCTCATTCCTGGCAGCGTTGACGCGC
ATGCGAACCTCAAGGCGTTCATGACACGCTTCGAGGCACTGCCGCGGGTG
GCGGAGTTCGTAGCATCTGCCGAGCACAAGAGCCTCAAGTTCAACAACAA
GATGGCCGTGTGGCAGTAG
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