mRNA_1446 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|161866
Unique NamemRNA_1446
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|161866 vs. uniprot
Match: A0A835Z7I5_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z7I5_9STRA)

HSP 1 Score: 466 bits (1200), Expect = 1.130e-164
Identity = 279/279 (100.00%), Postives = 279/279 (100.00%), Query Frame = 1 
Query:    1 MTCLPPLPHTLRELDMSGTFMEPPPGPLPPHLTSLSMSNGSDLALGELPFTLEKLHMSAAYNXXLGPLPASLVEITTSDRSEDGAEFDQSFGELPRGLQVLDLLEFHAFNHDLGALPAHLVMLTLGCQFNQHLGVLPDTLEVLVFYDGDDDSIFDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYLECVEYNHSLAPLPLTLQHLLIWNAAXXXXXXXXXXSLVELRIHPAEPGEQGAYTHRLQPIHPALKAVAISRDYAYLDDLAGVELAHNGMWR 837
            MTCLPPLPHTLRELDMSGTFMEPPPGPLPPHLTSLSMSNGSDLALGELPFTLEKLHMSAAYNXXLGPLPASLVEITTSDRSEDGAEFDQSFGELPRGLQVLDLLEFHAFNHDLGALPAHLVMLTLGCQFNQHLGVLPDTLEVLVFYDGDDDSIFDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYLECVEYNHSLAPLPLTLQHLLIWNAAXXXXXXXXXXSLVELRIHPAEPGEQGAYTHRLQPIHPALKAVAISRDYAYLDDLAGVELAHNGMWR
Sbjct:    1 MTCLPPLPHTLRELDMSGTFMEPPPGPLPPHLTSLSMSNGSDLALGELPFTLEKLHMSAAYNXXLGPLPASLVEITTSDRSEDGAEFDQSFGELPRGLQVLDLLEFHAFNHDLGALPAHLVMLTLGCQFNQHLGVLPDTLEVLVFYDGDDDSIFDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYLECVEYNHSLAPLPLTLQHLLIWNAAXXXXXXXXXXSLVELRIHPAEPGEQGAYTHRLQPIHPALKAVAISRDYAYLDDLAGVELAHNGMWR 279
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BLAST of jgi.p|Trimin1|161866 vs. uniprot
Match: A0A835Z5R0_9STRA (Uncharacterized protein n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z5R0_9STRA)

HSP 1 Score: 273 bits (697), Expect = 1.330e-85
Identity = 183/274 (66.79%), Postives = 206/274 (75.18%), Query Frame = 1 
Query:   10 LPPLPHTLRELDMSGTFMEPPPGPLPPHLTSLSMSNGSDLALGELPFTLEKLHMSAAYNXXLGPLPASLVEITTSDRSEDGAEFDQSFGELPRGLQVLDLLEFHAFNHDLGALPAHLVMLTLGCQFNQHLGVLPDTLEVLVFYDGDDDSIFDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYLECVEYNHSLAPLPLTLQHLLIWNAAXXXXXXXXXXSLVELRIHPAEPGEQGAYTHRLQPIHPALKAVAISRDYAYLDDLAGVELAHNGM 831
            LPPLPHTLRELD+S   ++   GPLPPHLTSLS S  S   +G+LP TLE+L ++AA+   LG LPA L ++ TSD  +D  EFDQ FGELP  LQVLDL+ F  FN  L ALP HL+ LTLGC  +Q LG LPDTLE L+FYDG   SIF+XXXXXXXXXXXXX   XXXXXXXXXXXXXX YLEC+  +  LAPLP +LQHLLIWN+A          SLVELRI PA PGE GAY HRLQPIHP+LKAVAISRDYAYLDDLAGV+LAHN M
Sbjct:  207 LPPLPHTLRELDLSAACIQS--GPLPPHLTSLSTSQDSGEPIGDLPITLERLAVNAAFEQRLGHLPACL-KVITSDLDDD-VEFDQLFGELPPQLQVLDLISFSEFNQHLDALPCHLLKLTLGCGSDQPLGTLPDTLEELLFYDGFPGSIFNXXXXXXXXXXXXXRLSXXXXXXXXXXXXXXEYLECM-VSQPLAPLPCSLQHLLIWNSAYHHDLGALPPSLVELRILPAVPGEDGAYQHRLQPIHPSLKAVAISRDYAYLDDLAGVKLAHNDM 475
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|161866 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A835Z7I5_9STRA1.130e-164100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835Z5R0_9STRA1.330e-8566.79Uncharacterized protein n=2 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_18contigContig_18:1077437..1078276 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|161866|e_gw1.18.273.1
Hectar predicted targeting categoryother localisation
TranscriptId162188
TrackFilteredModels1
ProteinId161866
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|161866gene_1446Tribonema minus UTEX_B_3156 geneContig_18 1077437..1078276 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_1446_1exon_1446_1Tribonema minus UTEX_B_3156 exonContig_18 1077437..1078276 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_1446CDS_1446Tribonema minus UTEX_B_3156 CDSContig_18 1077437..1078276 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|161866Trimin1|161866|e_gw1.18.273.1Tribonema minus UTEX_B_3156 polypeptideContig_18 1077437..1078276 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_1446 ID=mRNA_1446|Name=jgi.p|Trimin1|161866|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=840bp|location=Sequence derived from alignment at Contig_18:1077437..1078276- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGACATGTCTGCCACCTCTGCCTCACACTCTGCGGGAGCTAGATATGTC
CGGGACGTTCATGGAACCACCACCAGGGCCATTACCGCCTCACCTCACAT
CGCTATCCATGAGCAACGGTAGTGACCTGGCCCTCGGTGAGCTTCCCTTC
ACGCTTGAGAAGTTACACATGAGCGCCGCATATAACGAACCTCTCGGACC
TCTCCCAGCTTCGCTGGTAGAGATCACCACGTCAGACCGCTCAGAAGATG
GTGCGGAGTTCGACCAATCGTTCGGTGAGCTCCCCAGGGGGCTGCAGGTG
TTAGACCTGCTGGAATTTCATGCGTTCAACCATGATCTTGGTGCGCTCCC
TGCTCACCTGGTGATGCTGACCCTCGGCTGCCAGTTCAACCAGCATCTTG
GTGTATTGCCAGACACACTTGAGGTACTGGTGTTCTATGATGGAGACGAT
GACTCCATCTTCGACCAGCCGCTCGGCCCTCTGCCACAGTCCCTGCGCAA
GCTGCATCTCAGCAGCGCTTTCAATCAGGCGCTCGGCCTGCTGCCACCCA
GGCTGGAATACCTTGAGTGTGTGGAATACAATCACTCCCTAGCGCCGCTA
CCGCTCACCTTGCAGCACCTGCTCATATGGAACGCTGCTTACAATCACGA
TCTCGGCGCGCTCCCTCCAAGCCTTGTTGAGTTGCGCATTCACCCGGCAG
AGCCAGGAGAGCAGGGAGCGTACACACACAGACTCCAGCCGATCCATCCC
GCTCTCAAAGCCGTTGCGATATCAAGGGATTATGCTTACCTTGATGATCT
CGCCGGAGTAGAGCTTGCGCACAATGGCATGTGGCGGTAG
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protein sequence of jgi.p|Trimin1|161866

>Trimin1|161866|e_gw1.18.273.1 ID=Trimin1|161866|e_gw1.18.273.1|Name=jgi.p|Trimin1|161866|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=280bp
MTCLPPLPHTLRELDMSGTFMEPPPGPLPPHLTSLSMSNGSDLALGELPF
TLEKLHMSAAYNEPLGPLPASLVEITTSDRSEDGAEFDQSFGELPRGLQV
LDLLEFHAFNHDLGALPAHLVMLTLGCQFNQHLGVLPDTLEVLVFYDGDD
DSIFDQPLGPLPQSLRKLHLSSAFNQALGLLPPRLEYLECVEYNHSLAPL
PLTLQHLLIWNAAYNHDLGALPPSLVELRIHPAEPGEQGAYTHRLQPIHP
ALKAVAISRDYAYLDDLAGVELAHNGMWR*
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mRNA from alignment at Contig_18:1077437..1078276-

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_1446 ID=mRNA_1446|Name=jgi.p|Trimin1|161866|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=840bp|location=Sequence derived from alignment at Contig_18:1077437..1078276- (Tribonema minus UTEX_B_3156 )
ATGACATGTCTGCCACCTCTGCCTCACACTCTGCGGGAGCTAGATATGTC
CGGGACGTTCATGGAACCACCACCAGGGCCATTACCGCCTCACCTCACAT
CGCTATCCATGAGCAACGGTAGTGACCTGGCCCTCGGTGAGCTTCCCTTC
ACGCTTGAGAAGTTACACATGAGCGCCGCATATAACGAACCTCTCGGACC
TCTCCCAGCTTCGCTGGTAGAGATCACCACGTCAGACCGCTCAGAAGATG
GTGCGGAGTTCGACCAATCGTTCGGTGAGCTCCCCAGGGGGCTGCAGGTG
TTAGACCTGCTGGAATTTCATGCGTTCAACCATGATCTTGGTGCGCTCCC
TGCTCACCTGGTGATGCTGACCCTCGGCTGCCAGTTCAACCAGCATCTTG
GTGTATTGCCAGACACACTTGAGGTACTGGTGTTCTATGATGGAGACGAT
GACTCCATCTTCGACCAGCCGCTCGGCCCTCTGCCACAGTCCCTGCGCAA
GCTGCATCTCAGCAGCGCTTTCAATCAGGCGCTCGGCCTGCTGCCACCCA
GGCTGGAATACCTTGAGTGTGTGGAATACAATCACTCCCTAGCGCCGCTA
CCGCTCACCTTGCAGCACCTGCTCATATGGAACGCTGCTTACAATCACGA
TCTCGGCGCGCTCCCTCCAAGCCTTGTTGAGTTGCGCATTCACCCGGCAG
AGCCAGGAGAGCAGGGAGCGTACACACACAGACTCCAGCCGATCCATCCC
GCTCTCAAAGCCGTTGCGATATCAAGGGATTATGCTTACCTTGATGATCT
CGCCGGAGTAGAGCTTGCGCACAATGGCATGTGGCGGTAG
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Coding sequence (CDS) from alignment at Contig_18:1077437..1078276-

>mRNA_1446 ID=mRNA_1446|Name=jgi.p|Trimin1|161866|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=840bp|location=Sequence derived from alignment at Contig_18:1077437..1078276- (Tribonema minus UTEX_B_3156 )
ATGACATGTCTGCCACCTCTGCCTCACACTCTGCGGGAGCTAGATATGTC
CGGGACGTTCATGGAACCACCACCAGGGCCATTACCGCCTCACCTCACAT
CGCTATCCATGAGCAACGGTAGTGACCTGGCCCTCGGTGAGCTTCCCTTC
ACGCTTGAGAAGTTACACATGAGCGCCGCATATAACGAACCTCTCGGACC
TCTCCCAGCTTCGCTGGTAGAGATCACCACGTCAGACCGCTCAGAAGATG
GTGCGGAGTTCGACCAATCGTTCGGTGAGCTCCCCAGGGGGCTGCAGGTG
TTAGACCTGCTGGAATTTCATGCGTTCAACCATGATCTTGGTGCGCTCCC
TGCTCACCTGGTGATGCTGACCCTCGGCTGCCAGTTCAACCAGCATCTTG
GTGTATTGCCAGACACACTTGAGGTACTGGTGTTCTATGATGGAGACGAT
GACTCCATCTTCGACCAGCCGCTCGGCCCTCTGCCACAGTCCCTGCGCAA
GCTGCATCTCAGCAGCGCTTTCAATCAGGCGCTCGGCCTGCTGCCACCCA
GGCTGGAATACCTTGAGTGTGTGGAATACAATCACTCCCTAGCGCCGCTA
CCGCTCACCTTGCAGCACCTGCTCATATGGAACGCTGCTTACAATCACGA
TCTCGGCGCGCTCCCTCCAAGCCTTGTTGAGTTGCGCATTCACCCGGCAG
AGCCAGGAGAGCAGGGAGCGTACACACACAGACTCCAGCCGATCCATCCC
GCTCTCAAAGCCGTTGCGATATCAAGGGATTATGCTTACCTTGATGATCT
CGCCGGAGTAGAGCTTGCGCACAATGGCATGTGGCGGTAG
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