mRNA_14465 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|176048
Unique NamemRNA_14465
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
BLAST of jgi.p|Trimin1|176048 vs. uniprot
Match: A0A836CLW5_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CLW5_9STRA)

HSP 1 Score: 526 bits (1354), Expect = 1.480e-187
Identity = 297/297 (100.00%), Postives = 297/297 (100.00%), Query Frame = 1
Query:    1 MLVGGVLVSYVKQLVDGLYVYNLSTTSTDNIVRLLPSSSVAGAVDFWLAATATELLNGNQSSTAVAVTGYVYTVAFSQTSVTVNETGPTSQLVTVQLLARPTADVVLNLTAASSRVDIAPAYFSFTRASWNIAQTFTVMAIDTSYDEGTSYADIITSTLTTSDAALNGAQTPNITVTIIDNDVAGVTLSAPTAITCTVDMYGNSTLKGTYSVSLATKPLAAVQVSIGGLSSDSVASPLAAFFGASNYSTPVTISVSAKATAKISAVALVRTETVTHVVTSTDSYYNKLAAPSVTASV 891
            MLVGGVLVSYVKQLVDGLYVYNLSTTSTDNIVRLLPSSSVAGAVDFWLAATATELLNGNQSSTAVAVTGYVYTVAFSQTSVTVNETGPTSQLVTVQLLARPTADVVLNLTAASSRVDIAPAYFSFTRASWNIAQTFTVMAIDTSYDEGTSYADIITSTLTTSDAALNGAQTPNITVTIIDNDVAGVTLSAPTAITCTVDMYGNSTLKGTYSVSLATKPLAAVQVSIGGLSSDSVASPLAAFFGASNYSTPVTISVSAKATAKISAVALVRTETVTHVVTSTDSYYNKLAAPSVTASV
Sbjct:    1 MLVGGVLVSYVKQLVDGLYVYNLSTTSTDNIVRLLPSSSVAGAVDFWLAATATELLNGNQSSTAVAVTGYVYTVAFSQTSVTVNETGPTSQLVTVQLLARPTADVVLNLTAASSRVDIAPAYFSFTRASWNIAQTFTVMAIDTSYDEGTSYADIITSTLTTSDAALNGAQTPNITVTIIDNDVAGVTLSAPTAITCTVDMYGNSTLKGTYSVSLATKPLAAVQVSIGGLSSDSVASPLAAFFGASNYSTPVTISVSAKATAKISAVALVRTETVTHVVTSTDSYYNKLAAPSVTASV 297          
BLAST of jgi.p|Trimin1|176048 vs. uniprot
Match: A0A6I0E3P2_9BACT (Tandem-95 repeat protein (Fragment) n=1 Tax=Bacteroidales bacterium TaxID=2030927 RepID=A0A6I0E3P2_9BACT)

HSP 1 Score: 82.4 bits (202), Expect = 9.490e-14
Identity = 52/164 (31.71%), Postives = 100/164 (60.98%), Query Frame = 1
Query:  283 VQLLARPTADVVLNLTAAS-SRVDIAPAYFSFTRASWNIAQTFTVMAIDTSYDEGTSYADIITSTLTTSDAALNGAQTPNITVTIIDNDVAGVTLSAPTAITCTVDMYGNSTLKGTYSVSLATKPLAAVQVSIGGLSS-DSVASPLAAFFGASNYSTPVTISVS 768
            V+L  +PT++V +++++ + +   ++PA  +FT  +WN  QT T+  +D   D+G     IIT   T++D   NG   P+++VT I+ND AG+TLS  + +  T ++ G+ +    +++ L+T+P+A V +S    ++ +   +PL+  F +SN++TP T++ S
Sbjct:  268 VRLNTQPTSNVTISISSNNLNEGTVSPASITFTSLNWNELQTVTITGVDDDIDDGNVAYSIITGNTTSTDPKYNGLNVPDVSVTNINNDTAGITLSRTSGLV-TTELGGSDS----FTIRLSTRPIANVTISFSSSNTAEGTVAPLSITFNSSNWNTPQTVTAS 426          
BLAST of jgi.p|Trimin1|176048 vs. uniprot
Match: A0A3A4QLT9_9BACT (CRTAC1 family protein (Fragment) n=1 Tax=Phycisphaerales bacterium TaxID=2052180 RepID=A0A3A4QLT9_9BACT)

HSP 1 Score: 79.7 bits (195), Expect = 5.830e-13
Identity = 73/227 (32.16%), Postives = 112/227 (49.34%), Query Frame = 1
Query:  247 VNETGPTSQLVTVQLLARPTADVVLNLTAASSRVDIAP----AYFSFTRASWNIAQTFTVMAIDTSYDEGTSYADIITSTLTTSDAALNGAQTPNITVTIIDNDVAGVTLSAPTAITCTVDMYGNSTLKGTYSVSLATKPLAAV--------QVSIGGLSSDSVASPLAAFFGASNYSTPVTISVSAKATAKISAVALVRTETVTHVVTSTDSYYNKLAAPSVTASV 891
            V+ETGPT+   T+ LL +PTADV +                    +FT A+WN AQ  TV A+D    EG ++   IT ++  +D   NG    N+TV++ DNDVAGVTLS    +T    ++ + T   TYS  L  +P+A V        Q  +G         P+   F ++++S+P  ++V A   A +  +    T  +TH V S D+ +N L   +VT ++
Sbjct:  488 VSETGPTADTYTLALLTQPTADVTITXXXXXXXXXXXXXXXAVVLTFTPANWNTAQVVTVTAVDDGAIEG-NHTSTITHSVAGADPDYNGLVISNVTVSLADNDVAGVTLSQTGGLTA---VHESPTDTDTYSFVLTAEPIADVILTADPDTQTDLGA----GPGQPVTLVFTSADWSSPQVVTVRAVNDAVVEDL---HTSNITHSVASADAGFNGLVVSTVTVAI 703          
BLAST of jgi.p|Trimin1|176048 vs. uniprot
Match: UPI00048E6AA2 (sodium:calcium exchanger n=1 Tax=Chloroflexus sp. Y-396-1 TaxID=867845 RepID=UPI00048E6AA2)

HSP 1 Score: 78.2 bits (191), Expect = 2.500e-12
Identity = 81/226 (35.84%), Postives = 122/226 (53.98%), Query Frame = 1
Query:  220 VAFSQTSVTVNETGPTSQLVTVQLLARPTADVVLNLTAASS-RVD-IAPAYFSFTRASWNIAQTFTVMAIDTSYDE---GTSYADIITSTLTTSDAALNGAQTPNITVTIIDNDVAGVTLSAPTAITCTVDMYGNSTLKGTYSVSLATKPLAAVQVSIGG----LSSDSVASPLAAFFGASNYSTPVTISVSAKATAKISAVALVRTETVTHVVTSTDSYYNKLAA 870
            V  S +++TV E G  +   TV L ++PTA+V + +      R+D  A    +FT A+WN+AQT +V AID   DE   G+SYA  +   +++SDA  N      +TVTI DND AG+ L  PT +T T  + G      TY + L ++PLA V V+I G    L + S  + L   F ++N+++  T+SV      +I+   + R  T+ H  TS+D  YN L +
Sbjct: 2046 VIVSPSTLTVAEGGAAASY-TVVLTSQPTANVTVTIDGQGQVRLDGQATRTLTFTPATWNVAQTVSVEAIDDQIDETPVGSSYAFTLLHVVSSSDAIYNSLPAVPLTVTITDNDNAGL-LFNPTTLTVTEGVAG------TYEIRLTSQPLAPVSVTIDGQGYLLVNGSATTTLN--FTSANWNSAQTVSVLEPNVDQIAR--MPRNHTILHATTSSDPPYNSLGS 2259          
BLAST of jgi.p|Trimin1|176048 vs. uniprot
Match: A0A7C4NVT0_9BACT (Tandem-95 repeat protein n=1 Tax=Bacteroidales bacterium TaxID=2030927 RepID=A0A7C4NVT0_9BACT)

HSP 1 Score: 77.4 bits (189), Expect = 4.620e-12
Identity = 60/179 (33.52%), Postives = 104/179 (58.10%), Query Frame = 1
Query:  244 TVNETGPTSQLVTVQLLARPTADVVLNLTAAS-SRVDIAPAYFSFTRASWNIAQTFTVMAIDTSYDEGTSYADIITSTLTTSDAALNGAQTPNITVTIIDNDVAGVTLSAPTAITCTVDMYGNSTLKGTYSVSLATKPLAAVQVSIGGLSSDSVA----SPLAAFFGASNYSTPVTISV 765
            T  E G T+   T++L A+P+A+V + L++++ +   ++P   +FT  +WN  Q  T+  +D   D+G     IITS  +++D   N    P++TVT I+NDVAG+ ++ PT+   T +  G +T    +++ L ++PL+ V V   GLSS + A    SP +  F  +N++TP TI++
Sbjct: 1123 TTTEAGGTATF-TMRLTAQPSANVTITLSSSNMAEGTVSPTSVTFTPVNWNTNQPITLTGVDDLVDDGDVVYTIITSNTSSTDPVFNNINVPDVTVTNINNDVAGILVN-PTSGLTTTEAGGQAT----FTIRLNSQPLSNVTV---GLSSSNTAEGTVSPTSVTFAPANWNTPQTITI 1292          
BLAST of jgi.p|Trimin1|176048 vs. uniprot
Match: UPI0016858AE8 (Ig-like domain-containing protein n=1 Tax=Planktothrix sp. FACHB-1365 TaxID=2692855 RepID=UPI0016858AE8)

HSP 1 Score: 75.9 bits (185), Expect = 1.480e-11
Identity = 75/218 (34.40%), Postives = 113/218 (51.83%), Query Frame = 1
Query:  145 AATATELLNGNQSSTAVAVTGYVYTVA---FSQTSVTVNETGPTSQLVTVQLLARPTADVVLNLTAASSRVD-IAPAYFSFTRASWNIAQTFTVMAIDTSYDEGTSYADIITSTLTTSDAALNGAQTPNITVTIIDNDVAGVTLSAPTAITCTVDMYGNSTLKG---TYSVSLATKPLAAVQVSIGGLSSDSVA----SPLAAFFGASNYSTPVTISV 765
            AAT+T+       S  + VT     VA    S  S    E G T+   T+QL  +PTADV L L++ ++    +APA  +F   +WN  QT TV  +D S  +G    +I+T   T++D   NG    +I +  IDNDVAGVT+SA         + GN+T  G   T++V L+++P A V  +   LSS+++     S     F A+N++ P T++V
Sbjct: 1177 AATSTDTNYNGLDSNDIGVTNLDNDVAGFTISPISGNTTEAGGTATF-TLQLKTQPTADVTLPLSSDNTAEGTVAPASVTFNSTNWNQPQTVTVTGVDDSIADGNQNYNIVTGAATSTDTNYNGVDPNDIGIDNIDNDVAGVTISA---------ISGNTTEAGGTATFTVQLSSQPTADVSFN---LSSNNLGEGSLSTTTLTFNATNWNQPQTVTV 1381          
BLAST of jgi.p|Trimin1|176048 vs. uniprot
Match: A0A850A1A4_9BACT (PKD domain-containing protein n=3 Tax=Planctomycetes TaxID=203682 RepID=A0A850A1A4_9BACT)

HSP 1 Score: 75.1 bits (183), Expect = 2.550e-11
Identity = 75/226 (33.19%), Postives = 110/226 (48.67%), Query Frame = 1
Query:  238 SVTVNETGPTSQLVTVQLLARPTADVVLNLTA-ASSRVDIAPAY---FSFTRASWNIAQTFTVMAIDTSYDEGTSYADIITSTLTTSDAALNGAQTPNITVTIIDNDVAGVTLSAPTAITCTVDMYGNSTLKGTYSVSLATKPLAAVQVSIG-GLSSDSVASPLAAF---FGASNYSTPVTISVSAKATAKISAVALVRTETVTHVVTSTDSYYNKLAAPSVTASV 891
            S  V ETGPT+   T+ L ++PTA V + +     + V   P        + ASWNIA+T  V A+D +  EG  +   +T TLT+ D   NG   PN+   IIDND  GVT+      T   D+        TY++SL   P A V +++     +D  A P  A    F  SN++    ++V+A      S      T T+TH V+S D  YN +A P++T ++
Sbjct:  158 STDVAETGPTADSYTLVLDSQPTASVTITVDPDVETDVGSGPGVAMNIVISPASWNIARTVIVTAVDDADSEGP-HTSTLTHTLTSGDTNYNGLAVPNVVANIIDNDAPGVTIGQTGGST---DVNEQGPTSDTYALSLDKAPSADVTITVDPDAQTDLGAGPGVAINVTFQVSNWNVARNVTVTA---VNDSTQEGNHTSTITHAVSSGDGAYNGIAVPNLTVNI 376          
BLAST of jgi.p|Trimin1|176048 vs. uniprot
Match: UPI00187ED8C2 (Ig-like domain-containing protein n=1 Tax=Planktothrix mougeotii TaxID=54306 RepID=UPI00187ED8C2)

HSP 1 Score: 74.7 bits (182), Expect = 3.510e-11
Identity = 63/182 (34.62%), Postives = 99/182 (54.40%), Query Frame = 1
Query:  253 ETGPTSQLVTVQLLARPTADVVLNLTAASSRVD-IAPAYFSFTRASWNIAQTFTVMAIDTSYDEGTSYADIITSTLTTSDAALNGAQTPNITVTIIDNDVAGVTLSAPTAITCTVDMYGNSTLKG---TYSVSLATKPLAAVQVSI-------GGLSSDSVASPLAAFFGASNYSTPVTISV 765
            E G TS   T+QL  +PTADV L L++ ++    + PA  +F   +WN  QT TV  +D S  +G    +I+T   T++D   NG    +I +  IDNDVAGVT+SA         + GN+T  G   T++V L+++P A V  ++       G +S++S+       F A+N++ P T++V
Sbjct: 1214 EAGGTSTF-TIQLKTQPTADVTLPLSSDNTAEGTVLPASVTFNSTNWNQPQTVTVNGVDDSIADGNQTYNIVTGVATSTDTNYNGVDPNDIGIDNIDNDVAGVTISA---------ISGNTTEAGGTATFTVQLSSQPTADVSFNLSSDNPGEGSISANSLT------FDATNWNIPQTVTV 1379          
BLAST of jgi.p|Trimin1|176048 vs. uniprot
Match: A0A372DFL8_9CYAN (Uncharacterized protein n=1 Tax=Limnothrix sp. CACIAM 69d TaxID=1890733 RepID=A0A372DFL8_9CYAN)

HSP 1 Score: 74.3 bits (181), Expect = 4.150e-11
Identity = 78/223 (34.98%), Postives = 110/223 (49.33%), Query Frame = 1
Query:  235 TSVTVNETGPTSQLVTVQLLARPTADVVLNLTAASSRVDIAPAYFSFTRASWNIAQTFTVMAIDTSYDEGTSYADIITSTLTTSDAALNGAQTPNITVTIIDNDVAGVTLSAPT-AIT--CTVDMYG-NSTLKGTYSVSLATKPLAAVQVSIGGLSSDSVASPLAAFFGASNYSTPVTISVSAKATAKISAVALVRTETVTHVVTSTDSYYNKLAAPSVTASV 891
            T+ TV E G T++   + LL +P+A + +NL   + +V  +     FT A+ N  Q  TV A+D    EGT  + II  T+++ D A N      ITVTI DND AGVT S  T A+T     D Y    T + T  V++   P A +  S G L+           F A+N++TP T++V+A             T T+ H  TS D  Y  LA  SVTA++
Sbjct:  426 TNFTVTEGGVTNEY-RIMLLGQPSAPITINLAPNNGQVTTSIGEIIFTAANSNTTQAITVTAVDDGLIEGTHQSSII-HTVSSPDPAYNTLTISPITVTITDNDTAGVTFSKSTLALTEGGATDSYAVRLTSQPTSDVTVNLAPNAQLTTSTGNLT-----------FTAANWNTPQTVTVTAVDDFLFEGT---HTGTIAHTATSADPNYGTLALSSVTANI 632          
BLAST of jgi.p|Trimin1|176048 vs. uniprot
Match: A0A1F3CAZ7_9BACT (Uncharacterized protein (Fragment) n=1 Tax=Bacteroidetes bacterium GWA2_31_9b TaxID=1797315 RepID=A0A1F3CAZ7_9BACT)

HSP 1 Score: 74.3 bits (181), Expect = 4.760e-11
Identity = 56/164 (34.15%), Postives = 97/164 (59.15%), Query Frame = 1
Query:  280 TVQLLARPTADVVLNLTAASSRVD-IAPAYFSFTRASWNIAQTFTVMAIDTSYDEGTSYADIITSTLTTSDAALNGAQTPNITVTIIDNDVAGVTLSAPTAITCTVDMYGNSTLKGTYSVSLATKPLAAVQVSIGGLSSD---SVASPLAAFFGASNYSTPVTI 759
            T++L  +PTA+VV+ L+++++    ++PA  +FT  +WN  QT T+  ++   D+G     I+TS  +++D+  +G    N++VT IDND AG+T+S PT+   T +  G +T    +S+ L ++P A   V+IG  SSD      +P +  F  S+++T  TI
Sbjct: 1583 TIKLNTQPTANVVVGLSSSNTAEGTVSPASLTFTSGNWNSTQTVTITGVNDFVDDGDILYTILTSPASSTDSKYSGLDAANVSVTNIDNDAAGITVS-PTSGLTTTEAGGTAT----FSIVLTSRPTA--NVTIGLTSSDLTEGTVAPASVTFTPSDWNTSRTI 1739          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|176048 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A836CLW5_9STRA1.480e-187100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A6I0E3P2_9BACT9.490e-1431.71Tandem-95 repeat protein (Fragment) n=1 Tax=Bacter... [more]
A0A3A4QLT9_9BACT5.830e-1332.16CRTAC1 family protein (Fragment) n=1 Tax=Phycispha... [more]
UPI00048E6AA22.500e-1235.84sodium:calcium exchanger n=1 Tax=Chloroflexus sp. ... [more]
A0A7C4NVT0_9BACT4.620e-1233.52Tandem-95 repeat protein n=1 Tax=Bacteroidales bac... [more]
UPI0016858AE81.480e-1134.40Ig-like domain-containing protein n=1 Tax=Planktot... [more]
A0A850A1A4_9BACT2.550e-1133.19PKD domain-containing protein n=3 Tax=Planctomycet... [more]
UPI00187ED8C23.510e-1134.62Ig-like domain-containing protein n=1 Tax=Planktot... [more]
A0A372DFL8_9CYAN4.150e-1134.98Uncharacterized protein n=1 Tax=Limnothrix sp. CAC... [more]
A0A1F3CAZ7_9BACT4.760e-1134.15Uncharacterized protein (Fragment) n=1 Tax=Bactero... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_132contigContig_132:392832..394091 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|176048|e_gw1.132.47.1
Descriptionpyrroloquinoline quinone binding
COG categoryO
Max annot lvl1224|Proteobacteria
EggNOG OGsCOG1404@1|root,COG3940@1|root,COG1404@2|Bacteria,COG3940@2|Bacteria,1RCVP@1224|Proteobacteria
Evalue4.37e-12
Seed ortholog404589.Anae109_2925
Hectar predicted targeting categoryother localisation
TranscriptId176370
TrackFilteredModels1
ProteinId176048
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|176048gene_14465Tribonema minus UTEX_B_3156 geneContig_132 392832..394091 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|176048Trimin1|176048|e_gw1.132.47.1Tribonema minus UTEX_B_3156 polypeptideContig_132 392832..394091 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_14465_2exon_14465_2Tribonema minus UTEX_B_3156 exonContig_132 392832..393149 -
exon_14465_1exon_14465_1Tribonema minus UTEX_B_3156 exonContig_132 393519..394091 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_14465CDS_14465Tribonema minus UTEX_B_3156 CDSContig_132 393519..394091 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_14465 ID=mRNA_14465|Name=jgi.p|Trimin1|176048|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=891bp|location=Sequence derived from alignment at Contig_132:392832..394091- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGCTTGTAGGCGGCGTTCTGGTCTCATATGTCAAGCAACTGGTCGATGG
CTTGTACGTCTACAACCTATCGACGACATCTACCGACAACATAGTGCGCT
TGCTGCCGTCCAGCTCAGTTGCTGGTGCTGTTGACTTTTGGCTGGCTGCC
ACGGCGACAGAATTGCTGAATGGCAACCAGAGTTCCACAGCTGTGGCGGT
GACAGGCTACGTGTACACTGTGGCGTTCTCGCAGACAAGCGTAACAGTCA
ATGAGACGGGTCCGACATCACAATTGGTGACTGTGCAGCTGCTTGCAAGG
CCCACCGCTGATGTCGTGCTCAACCTGACTGCTGCTAGCAGTAGGGTGGA
CATTGCACCAGCATACTTTTCCTTTACACGAGCCTCGTGGAATATCGCTC
AAACTTTCACAGTGATGGCCATCGACACGAGCTACGATGAGGGTACGTCC
TATGCTGACATCATCACGTCCACGCTCACGACCAGTGATGCTGCTCTCAA
CGGAGCCCAGACACCAAACATCACGGTGACCATCATTGACAATGATGTGG
CTGGCGTCACGTTGTCAGCTCCCACTGCAATCACGTGCACCGTCGACATG
TATGGCAACTCCACCCTGAAGGGAACATATTCCGTCAGTCTTGCCACTAA
ACCACTGGCAGCGGTACAGGTCAGCATCGGTGGCCTGAGTTCTGACAGTG
TTGCATCGCCATTGGCTGCCTTCTTTGGTGCCAGCAACTATTCAACACCA
GTCACCATCAGCGTATCAGCCAAAGCTACAGCCAAGATATCGGCGGTCGC
ACTTGTCCGCACAGAGACTGTGACGCACGTGGTCACCAGCACAGACTCAT
ACTACAACAAGCTTGCAGCGCCATCAGTGACTGCAAGCGTG
back to top

protein sequence of jgi.p|Trimin1|176048

>Trimin1|176048|e_gw1.132.47.1 ID=Trimin1|176048|e_gw1.132.47.1|Name=jgi.p|Trimin1|176048|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=297bp
MLVGGVLVSYVKQLVDGLYVYNLSTTSTDNIVRLLPSSSVAGAVDFWLAA
TATELLNGNQSSTAVAVTGYVYTVAFSQTSVTVNETGPTSQLVTVQLLAR
PTADVVLNLTAASSRVDIAPAYFSFTRASWNIAQTFTVMAIDTSYDEGTS
YADIITSTLTTSDAALNGAQTPNITVTIIDNDVAGVTLSAPTAITCTVDM
YGNSTLKGTYSVSLATKPLAAVQVSIGGLSSDSVASPLAAFFGASNYSTP
VTISVSAKATAKISAVALVRTETVTHVVTSTDSYYNKLAAPSVTASV
back to top

mRNA from alignment at Contig_132:392832..394091-

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_14465 ID=mRNA_14465|Name=jgi.p|Trimin1|176048|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1260bp|location=Sequence derived from alignment at Contig_132:392832..394091- (Tribonema minus UTEX_B_3156 )
ATGCTTGTAGGCGGCGTTCTGGTCTCATATGTCAAGCAACTGGTCGATGG CTTGTACGTCTACAACCTATCGACGACATCTACCGACAACATAGTGCGCT TGCTGCCGTCCAGCTCAGTTGCTGGTGCTGTTGACTTTTGGCTGGCTGCC ACGGCGACAGAATTGCTGAATGGCAACCAGAGTTCCACAGCTGTGGCGGT GACAGGCTACGTGTACACTGTGGCGTTCTCGCAGACAAGCGTAACAGTCA ATGAGACGGGTCCGACATCACAATTGGTGACTGTGCAGCTGCTTGCAAGG CCCACCGCTGATGTCGTGCTCAACCTGACTGCTGCTAGCAGTAGGGTGGA CATTGCACCAGCATACTTTTCCTTTACACGAGCCTCGTGGAATATCGCTC AAACTTTCACAGTGATGGCCATCGACACGAGCTACGATGAGGGTACGTCC TATGCTGACATCATCACGTCCACGCTCACGACCAGTGATGCTGCTCTCAA CGGAGCCCAGACACCAAACATCACGGTGACCATCATTGACAATGATGTGG CTGGCGTCACGTTGTCAGCTCCCGTGGTGACTGGCACTACATTCGTGGAC AGGACTCTGACGCTCGCATGTGATGAAGGAAGCACGTGTGAGATTGTTGT GGCACTGGGTTCACGCCCCACAGCTGCTGTCACCGTCACATTTGGGGTCG CCAATGCGCTCGGGTTGACCATGGACACTGTCACAGTTGCGTTCGACAAC AGCGCGACATCCTACATGACACCCCAGGCCGTCCATGTGACTCCACTTAA TGACGCCACAAGGTCTCCTGATGCTGTGGTGTCCATGCCGTACACAGTCT CCAGCTCTGATCCAACCTACTCGAGCACATTCGGGGGTACGGTGGTCATC ACCTCCAAAGACAACGATGTACCACAAGTGGTGCTGTCCAAGACTGCAAT CACGTGCACCGTCGACATGTATGGCAACTCCACCCTGAAGGGAACATATT CCGTCAGTCTTGCCACTAAACCACTGGCAGCGGTACAGGTCAGCATCGGT GGCCTGAGTTCTGACAGTGTTGCATCGCCATTGGCTGCCTTCTTTGGTGC CAGCAACTATTCAACACCAGTCACCATCAGCGTATCAGCCAAAGCTACAG CCAAGATATCGGCGGTCGCACTTGTCCGCACAGAGACTGTGACGCACGTG GTCACCAGCACAGACTCATACTACAACAAGCTTGCAGCGCCATCAGTGAC TGCAAGCGTG
back to top

Coding sequence (CDS) from alignment at Contig_132:392832..394091-

>mRNA_14465 ID=mRNA_14465|Name=jgi.p|Trimin1|176048|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=891bp|location=Sequence derived from alignment at Contig_132:392832..394091- (Tribonema minus UTEX_B_3156 )
ATGCTTGTAGGCGGCGTTCTGGTCTCATATGTCAAGCAACTGGTCGATGG
CTTGTACGTCTACAACCTATCGACGACATCTACCGACAACATAGTGCGCT
TGCTGCCGTCCAGCTCAGTTGCTGGTGCTGTTGACTTTTGGCTGGCTGCC
ACGGCGACAGAATTGCTGAATGGCAACCAGAGTTCCACAGCTGTGGCGGT
GACAGGCTACGTGTACACTGTGGCGTTCTCGCAGACAAGCGTAACAGTCA
ATGAGACGGGTCCGACATCACAATTGGTGACTGTGCAGCTGCTTGCAAGG
CCCACCGCTGATGTCGTGCTCAACCTGACTGCTGCTAGCAGTAGGGTGGA
CATTGCACCAGCATACTTTTCCTTTACACGAGCCTCGTGGAATATCGCTC
AAACTTTCACAGTGATGGCCATCGACACGAGCTACGATGAGGGTACGTCC
TATGCTGACATCATCACGTCCACGCTCACGACCAGTGATGCTGCTCTCAA
CGGAGCCCAGACACCAAACATCACGGTGACCATCATTGACAATGATGTGG
CTGGCGTCACGTTGTCAGCTCCCACTGCAATCACGTGCACCGTCGACATG
TATGGCAACTCCACCCTGAAGGGAACATATTCCGTCAGTCTTGCCACTAA
ACCACTGGCAGCGGTACAGGTCAGCATCGGTGGCCTGAGTTCTGACAGTG
TTGCATCGCCATTGGCTGCCTTCTTTGGTGCCAGCAACTATTCAACACCA
GTCACCATCAGCGTATCAGCCAAAGCTACAGCCAAGATATCGGCGGTCGC
ACTTGTCCGCACAGAGACTGTGACGCACGTGGTCACCAGCACAGACTCAT
ACTACAACAAGCTTGCAGCGCCATCAGTGACTGCAAGCGTG
back to top