mRNA_14465 (mRNA) Tribonema minus UTEX_B_3156
Overview
Homology
BLAST of jgi.p|Trimin1|176048 vs. uniprot
Match: A0A836CLW5_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CLW5_9STRA) HSP 1 Score: 526 bits (1354), Expect = 1.480e-187 Identity = 297/297 (100.00%), Postives = 297/297 (100.00%), Query Frame = 1 Query: 1 MLVGGVLVSYVKQLVDGLYVYNLSTTSTDNIVRLLPSSSVAGAVDFWLAATATELLNGNQSSTAVAVTGYVYTVAFSQTSVTVNETGPTSQLVTVQLLARPTADVVLNLTAASSRVDIAPAYFSFTRASWNIAQTFTVMAIDTSYDEGTSYADIITSTLTTSDAALNGAQTPNITVTIIDNDVAGVTLSAPTAITCTVDMYGNSTLKGTYSVSLATKPLAAVQVSIGGLSSDSVASPLAAFFGASNYSTPVTISVSAKATAKISAVALVRTETVTHVVTSTDSYYNKLAAPSVTASV 891 MLVGGVLVSYVKQLVDGLYVYNLSTTSTDNIVRLLPSSSVAGAVDFWLAATATELLNGNQSSTAVAVTGYVYTVAFSQTSVTVNETGPTSQLVTVQLLARPTADVVLNLTAASSRVDIAPAYFSFTRASWNIAQTFTVMAIDTSYDEGTSYADIITSTLTTSDAALNGAQTPNITVTIIDNDVAGVTLSAPTAITCTVDMYGNSTLKGTYSVSLATKPLAAVQVSIGGLSSDSVASPLAAFFGASNYSTPVTISVSAKATAKISAVALVRTETVTHVVTSTDSYYNKLAAPSVTASV Sbjct: 1 MLVGGVLVSYVKQLVDGLYVYNLSTTSTDNIVRLLPSSSVAGAVDFWLAATATELLNGNQSSTAVAVTGYVYTVAFSQTSVTVNETGPTSQLVTVQLLARPTADVVLNLTAASSRVDIAPAYFSFTRASWNIAQTFTVMAIDTSYDEGTSYADIITSTLTTSDAALNGAQTPNITVTIIDNDVAGVTLSAPTAITCTVDMYGNSTLKGTYSVSLATKPLAAVQVSIGGLSSDSVASPLAAFFGASNYSTPVTISVSAKATAKISAVALVRTETVTHVVTSTDSYYNKLAAPSVTASV 297
BLAST of jgi.p|Trimin1|176048 vs. uniprot
Match: A0A6I0E3P2_9BACT (Tandem-95 repeat protein (Fragment) n=1 Tax=Bacteroidales bacterium TaxID=2030927 RepID=A0A6I0E3P2_9BACT) HSP 1 Score: 82.4 bits (202), Expect = 9.490e-14 Identity = 52/164 (31.71%), Postives = 100/164 (60.98%), Query Frame = 1 Query: 283 VQLLARPTADVVLNLTAAS-SRVDIAPAYFSFTRASWNIAQTFTVMAIDTSYDEGTSYADIITSTLTTSDAALNGAQTPNITVTIIDNDVAGVTLSAPTAITCTVDMYGNSTLKGTYSVSLATKPLAAVQVSIGGLSS-DSVASPLAAFFGASNYSTPVTISVS 768 V+L +PT++V +++++ + + ++PA +FT +WN QT T+ +D D+G IIT T++D NG P+++VT I+ND AG+TLS + + T ++ G+ + +++ L+T+P+A V +S ++ + +PL+ F +SN++TP T++ S Sbjct: 268 VRLNTQPTSNVTISISSNNLNEGTVSPASITFTSLNWNELQTVTITGVDDDIDDGNVAYSIITGNTTSTDPKYNGLNVPDVSVTNINNDTAGITLSRTSGLV-TTELGGSDS----FTIRLSTRPIANVTISFSSSNTAEGTVAPLSITFNSSNWNTPQTVTAS 426
BLAST of jgi.p|Trimin1|176048 vs. uniprot
Match: A0A3A4QLT9_9BACT (CRTAC1 family protein (Fragment) n=1 Tax=Phycisphaerales bacterium TaxID=2052180 RepID=A0A3A4QLT9_9BACT) HSP 1 Score: 79.7 bits (195), Expect = 5.830e-13 Identity = 73/227 (32.16%), Postives = 112/227 (49.34%), Query Frame = 1 Query: 247 VNETGPTSQLVTVQLLARPTADVVLNLTAASSRVDIAP----AYFSFTRASWNIAQTFTVMAIDTSYDEGTSYADIITSTLTTSDAALNGAQTPNITVTIIDNDVAGVTLSAPTAITCTVDMYGNSTLKGTYSVSLATKPLAAV--------QVSIGGLSSDSVASPLAAFFGASNYSTPVTISVSAKATAKISAVALVRTETVTHVVTSTDSYYNKLAAPSVTASV 891 V+ETGPT+ T+ LL +PTADV + +FT A+WN AQ TV A+D EG ++ IT ++ +D NG N+TV++ DNDVAGVTLS +T ++ + T TYS L +P+A V Q +G P+ F ++++S+P ++V A A + + T +TH V S D+ +N L +VT ++ Sbjct: 488 VSETGPTADTYTLALLTQPTADVTITXXXXXXXXXXXXXXXAVVLTFTPANWNTAQVVTVTAVDDGAIEG-NHTSTITHSVAGADPDYNGLVISNVTVSLADNDVAGVTLSQTGGLTA---VHESPTDTDTYSFVLTAEPIADVILTADPDTQTDLGA----GPGQPVTLVFTSADWSSPQVVTVRAVNDAVVEDL---HTSNITHSVASADAGFNGLVVSTVTVAI 703
BLAST of jgi.p|Trimin1|176048 vs. uniprot
Match: UPI00048E6AA2 (sodium:calcium exchanger n=1 Tax=Chloroflexus sp. Y-396-1 TaxID=867845 RepID=UPI00048E6AA2) HSP 1 Score: 78.2 bits (191), Expect = 2.500e-12 Identity = 81/226 (35.84%), Postives = 122/226 (53.98%), Query Frame = 1 Query: 220 VAFSQTSVTVNETGPTSQLVTVQLLARPTADVVLNLTAASS-RVD-IAPAYFSFTRASWNIAQTFTVMAIDTSYDE---GTSYADIITSTLTTSDAALNGAQTPNITVTIIDNDVAGVTLSAPTAITCTVDMYGNSTLKGTYSVSLATKPLAAVQVSIGG----LSSDSVASPLAAFFGASNYSTPVTISVSAKATAKISAVALVRTETVTHVVTSTDSYYNKLAA 870 V S +++TV E G + TV L ++PTA+V + + R+D A +FT A+WN+AQT +V AID DE G+SYA + +++SDA N +TVTI DND AG+ L PT +T T + G TY + L ++PLA V V+I G L + S + L F ++N+++ T+SV +I+ + R T+ H TS+D YN L + Sbjct: 2046 VIVSPSTLTVAEGGAAASY-TVVLTSQPTANVTVTIDGQGQVRLDGQATRTLTFTPATWNVAQTVSVEAIDDQIDETPVGSSYAFTLLHVVSSSDAIYNSLPAVPLTVTITDNDNAGL-LFNPTTLTVTEGVAG------TYEIRLTSQPLAPVSVTIDGQGYLLVNGSATTTLN--FTSANWNSAQTVSVLEPNVDQIAR--MPRNHTILHATTSSDPPYNSLGS 2259
BLAST of jgi.p|Trimin1|176048 vs. uniprot
Match: A0A7C4NVT0_9BACT (Tandem-95 repeat protein n=1 Tax=Bacteroidales bacterium TaxID=2030927 RepID=A0A7C4NVT0_9BACT) HSP 1 Score: 77.4 bits (189), Expect = 4.620e-12 Identity = 60/179 (33.52%), Postives = 104/179 (58.10%), Query Frame = 1 Query: 244 TVNETGPTSQLVTVQLLARPTADVVLNLTAAS-SRVDIAPAYFSFTRASWNIAQTFTVMAIDTSYDEGTSYADIITSTLTTSDAALNGAQTPNITVTIIDNDVAGVTLSAPTAITCTVDMYGNSTLKGTYSVSLATKPLAAVQVSIGGLSSDSVA----SPLAAFFGASNYSTPVTISV 765 T E G T+ T++L A+P+A+V + L++++ + ++P +FT +WN Q T+ +D D+G IITS +++D N P++TVT I+NDVAG+ ++ PT+ T + G +T +++ L ++PL+ V V GLSS + A SP + F +N++TP TI++ Sbjct: 1123 TTTEAGGTATF-TMRLTAQPSANVTITLSSSNMAEGTVSPTSVTFTPVNWNTNQPITLTGVDDLVDDGDVVYTIITSNTSSTDPVFNNINVPDVTVTNINNDVAGILVN-PTSGLTTTEAGGQAT----FTIRLNSQPLSNVTV---GLSSSNTAEGTVSPTSVTFAPANWNTPQTITI 1292
BLAST of jgi.p|Trimin1|176048 vs. uniprot
Match: UPI0016858AE8 (Ig-like domain-containing protein n=1 Tax=Planktothrix sp. FACHB-1365 TaxID=2692855 RepID=UPI0016858AE8) HSP 1 Score: 75.9 bits (185), Expect = 1.480e-11 Identity = 75/218 (34.40%), Postives = 113/218 (51.83%), Query Frame = 1 Query: 145 AATATELLNGNQSSTAVAVTGYVYTVA---FSQTSVTVNETGPTSQLVTVQLLARPTADVVLNLTAASSRVD-IAPAYFSFTRASWNIAQTFTVMAIDTSYDEGTSYADIITSTLTTSDAALNGAQTPNITVTIIDNDVAGVTLSAPTAITCTVDMYGNSTLKG---TYSVSLATKPLAAVQVSIGGLSSDSVA----SPLAAFFGASNYSTPVTISV 765 AAT+T+ S + VT VA S S E G T+ T+QL +PTADV L L++ ++ +APA +F +WN QT TV +D S +G +I+T T++D NG +I + IDNDVAGVT+SA + GN+T G T++V L+++P A V + LSS+++ S F A+N++ P T++V Sbjct: 1177 AATSTDTNYNGLDSNDIGVTNLDNDVAGFTISPISGNTTEAGGTATF-TLQLKTQPTADVTLPLSSDNTAEGTVAPASVTFNSTNWNQPQTVTVTGVDDSIADGNQNYNIVTGAATSTDTNYNGVDPNDIGIDNIDNDVAGVTISA---------ISGNTTEAGGTATFTVQLSSQPTADVSFN---LSSNNLGEGSLSTTTLTFNATNWNQPQTVTV 1381
BLAST of jgi.p|Trimin1|176048 vs. uniprot
Match: A0A850A1A4_9BACT (PKD domain-containing protein n=3 Tax=Planctomycetes TaxID=203682 RepID=A0A850A1A4_9BACT) HSP 1 Score: 75.1 bits (183), Expect = 2.550e-11 Identity = 75/226 (33.19%), Postives = 110/226 (48.67%), Query Frame = 1 Query: 238 SVTVNETGPTSQLVTVQLLARPTADVVLNLTA-ASSRVDIAPAY---FSFTRASWNIAQTFTVMAIDTSYDEGTSYADIITSTLTTSDAALNGAQTPNITVTIIDNDVAGVTLSAPTAITCTVDMYGNSTLKGTYSVSLATKPLAAVQVSIG-GLSSDSVASPLAAF---FGASNYSTPVTISVSAKATAKISAVALVRTETVTHVVTSTDSYYNKLAAPSVTASV 891 S V ETGPT+ T+ L ++PTA V + + + V P + ASWNIA+T V A+D + EG + +T TLT+ D NG PN+ IIDND GVT+ T D+ TY++SL P A V +++ +D A P A F SN++ ++V+A S T T+TH V+S D YN +A P++T ++ Sbjct: 158 STDVAETGPTADSYTLVLDSQPTASVTITVDPDVETDVGSGPGVAMNIVISPASWNIARTVIVTAVDDADSEGP-HTSTLTHTLTSGDTNYNGLAVPNVVANIIDNDAPGVTIGQTGGST---DVNEQGPTSDTYALSLDKAPSADVTITVDPDAQTDLGAGPGVAINVTFQVSNWNVARNVTVTA---VNDSTQEGNHTSTITHAVSSGDGAYNGIAVPNLTVNI 376
BLAST of jgi.p|Trimin1|176048 vs. uniprot
Match: UPI00187ED8C2 (Ig-like domain-containing protein n=1 Tax=Planktothrix mougeotii TaxID=54306 RepID=UPI00187ED8C2) HSP 1 Score: 74.7 bits (182), Expect = 3.510e-11 Identity = 63/182 (34.62%), Postives = 99/182 (54.40%), Query Frame = 1 Query: 253 ETGPTSQLVTVQLLARPTADVVLNLTAASSRVD-IAPAYFSFTRASWNIAQTFTVMAIDTSYDEGTSYADIITSTLTTSDAALNGAQTPNITVTIIDNDVAGVTLSAPTAITCTVDMYGNSTLKG---TYSVSLATKPLAAVQVSI-------GGLSSDSVASPLAAFFGASNYSTPVTISV 765 E G TS T+QL +PTADV L L++ ++ + PA +F +WN QT TV +D S +G +I+T T++D NG +I + IDNDVAGVT+SA + GN+T G T++V L+++P A V ++ G +S++S+ F A+N++ P T++V Sbjct: 1214 EAGGTSTF-TIQLKTQPTADVTLPLSSDNTAEGTVLPASVTFNSTNWNQPQTVTVNGVDDSIADGNQTYNIVTGVATSTDTNYNGVDPNDIGIDNIDNDVAGVTISA---------ISGNTTEAGGTATFTVQLSSQPTADVSFNLSSDNPGEGSISANSLT------FDATNWNIPQTVTV 1379
BLAST of jgi.p|Trimin1|176048 vs. uniprot
Match: A0A372DFL8_9CYAN (Uncharacterized protein n=1 Tax=Limnothrix sp. CACIAM 69d TaxID=1890733 RepID=A0A372DFL8_9CYAN) HSP 1 Score: 74.3 bits (181), Expect = 4.150e-11 Identity = 78/223 (34.98%), Postives = 110/223 (49.33%), Query Frame = 1 Query: 235 TSVTVNETGPTSQLVTVQLLARPTADVVLNLTAASSRVDIAPAYFSFTRASWNIAQTFTVMAIDTSYDEGTSYADIITSTLTTSDAALNGAQTPNITVTIIDNDVAGVTLSAPT-AIT--CTVDMYG-NSTLKGTYSVSLATKPLAAVQVSIGGLSSDSVASPLAAFFGASNYSTPVTISVSAKATAKISAVALVRTETVTHVVTSTDSYYNKLAAPSVTASV 891 T+ TV E G T++ + LL +P+A + +NL + +V + FT A+ N Q TV A+D EGT + II T+++ D A N ITVTI DND AGVT S T A+T D Y T + T V++ P A + S G L+ F A+N++TP T++V+A T T+ H TS D Y LA SVTA++ Sbjct: 426 TNFTVTEGGVTNEY-RIMLLGQPSAPITINLAPNNGQVTTSIGEIIFTAANSNTTQAITVTAVDDGLIEGTHQSSII-HTVSSPDPAYNTLTISPITVTITDNDTAGVTFSKSTLALTEGGATDSYAVRLTSQPTSDVTVNLAPNAQLTTSTGNLT-----------FTAANWNTPQTVTVTAVDDFLFEGT---HTGTIAHTATSADPNYGTLALSSVTANI 632
BLAST of jgi.p|Trimin1|176048 vs. uniprot
Match: A0A1F3CAZ7_9BACT (Uncharacterized protein (Fragment) n=1 Tax=Bacteroidetes bacterium GWA2_31_9b TaxID=1797315 RepID=A0A1F3CAZ7_9BACT) HSP 1 Score: 74.3 bits (181), Expect = 4.760e-11 Identity = 56/164 (34.15%), Postives = 97/164 (59.15%), Query Frame = 1 Query: 280 TVQLLARPTADVVLNLTAASSRVD-IAPAYFSFTRASWNIAQTFTVMAIDTSYDEGTSYADIITSTLTTSDAALNGAQTPNITVTIIDNDVAGVTLSAPTAITCTVDMYGNSTLKGTYSVSLATKPLAAVQVSIGGLSSD---SVASPLAAFFGASNYSTPVTI 759 T++L +PTA+VV+ L+++++ ++PA +FT +WN QT T+ ++ D+G I+TS +++D+ +G N++VT IDND AG+T+S PT+ T + G +T +S+ L ++P A V+IG SSD +P + F S+++T TI Sbjct: 1583 TIKLNTQPTANVVVGLSSSNTAEGTVSPASLTFTSGNWNSTQTVTITGVNDFVDDGDILYTILTSPASSTDSKYSGLDAANVSVTNIDNDAAGITVS-PTSGLTTTEAGGTAT----FSIVLTSRPTA--NVTIGLTSSDLTEGTVAPASVTFTPSDWNTSRTI 1739 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|176048 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_14465 ID=mRNA_14465|Name=jgi.p|Trimin1|176048|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=891bp|location=Sequence derived from alignment at Contig_132:392832..394091- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. ATGCTTGTAGGCGGCGTTCTGGTCTCATATGTCAAGCAACTGGTCGATGGback to top protein sequence of jgi.p|Trimin1|176048 >Trimin1|176048|e_gw1.132.47.1 ID=Trimin1|176048|e_gw1.132.47.1|Name=jgi.p|Trimin1|176048|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=297bp MLVGGVLVSYVKQLVDGLYVYNLSTTSTDNIVRLLPSSSVAGAVDFWLAAback to top mRNA from alignment at Contig_132:392832..394091- Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_14465 ID=mRNA_14465|Name=jgi.p|Trimin1|176048|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1260bp|location=Sequence derived from alignment at Contig_132:392832..394091- (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_132:392832..394091- >mRNA_14465 ID=mRNA_14465|Name=jgi.p|Trimin1|176048|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=891bp|location=Sequence derived from alignment at Contig_132:392832..394091- (Tribonema minus UTEX_B_3156 )back to top |