mRNA_1432 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|161886
Unique NamemRNA_1432
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
BLAST of jgi.p|Trimin1|161886 vs. uniprot
Match: A0A835Z5L3_9STRA (NTP_transf_2 domain-containing protein n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z5L3_9STRA)

HSP 1 Score: 1474 bits (3815), Expect = 0.000e+0
Identity = 765/765 (100.00%), Postives = 765/765 (100.00%), Query Frame = 1
Query:    1 MDAAVDLTTYVHPHEAHAFKDAVTLAQQTGDFTRGGGNLESAVAIVSSAARAALGADARVTVAGSVAKGTTVMGSDVDLYVETSTPVSLQQRQALEARLRQHPLTNAAHVQLKLKAIHMQLLGMDIDVVCSNTVEFGLLPPADASVGADAALQLAVQALKIWARCATGGARKVPGRMMEALAKHCRDARGSSISSSSQQGDGGMQLFVAVLQVIADGGTQQPQLRAATTLDSAGRTALRARAQAVLHVFAVSRVLLSGSEDSDGGFRTAAEVHAWLSGYSGQAPLVHTHAGVAPGWLFMAPAQQRATDAFFADFGGAATAKDTAASRTAAASSSEEWTAHDGARIESLRLMLDSPLGVYTTARMQAPAPGALTVHSVMTEITILKQHAMRGSKVASKMLIARMMWVDGDLALRDGRADDAVELYAGSLRASVADGDPFCGWWRADSKYAECADSVLARHPNSVDAHMLHAWSFMRSGRYKDSERVLTATIERHAPDDTHGVIHLRMCLYGNQGRWAEALQDASRCAALCPDEPIFHYWVAVGRRNTVRPETAAAGAAQTLSALQRFVAHAPPEGRKVPMAWYDIAMQEVLAGRGDARRGDAKFERARHAVREAQAAEVVTLPVFPATECEAKDTVLKTMAAFGLLPGDGKLNKDLLKRLYLGCGDDVNALHKCGNDAFKRRDYYKAEAAYTKALELAPSHVELLSNRAATRLELRWFTAAAADATAAAMLRPDWAKPHARAARAHLGRKDGAAALASARRAAALL 2295
            MDAAVDLTTYVHPHEAHAFKDAVTLAQQTGDFTRGGGNLESAVAIVSSAARAALGADARVTVAGSVAKGTTVMGSDVDLYVETSTPVSLQQRQALEARLRQHPLTNAAHVQLKLKAIHMQLLGMDIDVVCSNTVEFGLLPPADASVGADAALQLAVQALKIWARCATGGARKVPGRMMEALAKHCRDARGSSISSSSQQGDGGMQLFVAVLQVIADGGTQQPQLRAATTLDSAGRTALRARAQAVLHVFAVSRVLLSGSEDSDGGFRTAAEVHAWLSGYSGQAPLVHTHAGVAPGWLFMAPAQQRATDAFFADFGGAATAKDTAASRTAAASSSEEWTAHDGARIESLRLMLDSPLGVYTTARMQAPAPGALTVHSVMTEITILKQHAMRGSKVASKMLIARMMWVDGDLALRDGRADDAVELYAGSLRASVADGDPFCGWWRADSKYAECADSVLARHPNSVDAHMLHAWSFMRSGRYKDSERVLTATIERHAPDDTHGVIHLRMCLYGNQGRWAEALQDASRCAALCPDEPIFHYWVAVGRRNTVRPETAAAGAAQTLSALQRFVAHAPPEGRKVPMAWYDIAMQEVLAGRGDARRGDAKFERARHAVREAQAAEVVTLPVFPATECEAKDTVLKTMAAFGLLPGDGKLNKDLLKRLYLGCGDDVNALHKCGNDAFKRRDYYKAEAAYTKALELAPSHVELLSNRAATRLELRWFTAAAADATAAAMLRPDWAKPHARAARAHLGRKDGAAALASARRAAALL
Sbjct:    1 MDAAVDLTTYVHPHEAHAFKDAVTLAQQTGDFTRGGGNLESAVAIVSSAARAALGADARVTVAGSVAKGTTVMGSDVDLYVETSTPVSLQQRQALEARLRQHPLTNAAHVQLKLKAIHMQLLGMDIDVVCSNTVEFGLLPPADASVGADAALQLAVQALKIWARCATGGARKVPGRMMEALAKHCRDARGSSISSSSQQGDGGMQLFVAVLQVIADGGTQQPQLRAATTLDSAGRTALRARAQAVLHVFAVSRVLLSGSEDSDGGFRTAAEVHAWLSGYSGQAPLVHTHAGVAPGWLFMAPAQQRATDAFFADFGGAATAKDTAASRTAAASSSEEWTAHDGARIESLRLMLDSPLGVYTTARMQAPAPGALTVHSVMTEITILKQHAMRGSKVASKMLIARMMWVDGDLALRDGRADDAVELYAGSLRASVADGDPFCGWWRADSKYAECADSVLARHPNSVDAHMLHAWSFMRSGRYKDSERVLTATIERHAPDDTHGVIHLRMCLYGNQGRWAEALQDASRCAALCPDEPIFHYWVAVGRRNTVRPETAAAGAAQTLSALQRFVAHAPPEGRKVPMAWYDIAMQEVLAGRGDARRGDAKFERARHAVREAQAAEVVTLPVFPATECEAKDTVLKTMAAFGLLPGDGKLNKDLLKRLYLGCGDDVNALHKCGNDAFKRRDYYKAEAAYTKALELAPSHVELLSNRAATRLELRWFTAAAADATAAAMLRPDWAKPHARAARAHLGRKDGAAALASARRAAALL 765          
BLAST of jgi.p|Trimin1|161886 vs. uniprot
Match: A0A836CEC5_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CEC5_9STRA)

HSP 1 Score: 794 bits (2051), Expect = 8.380e-255
Identity = 429/524 (81.87%), Postives = 436/524 (83.21%), Query Frame = 1
Query:    1 MDAAVDLTTYVHPHEAHAFKDAVTLAQQTGDFTRGGGNLESAVAIVSSAARAALGADARVTVAGSVAKGTTVMGSDVDLYVETSTPVSLQQRQALEARLRQHPLTNAAHVQLKLKAIHMQLLGMDIDVVCSNTVEFGLLPPADASVGADAALQLAVQALKIWARCATGGARKVPGRMMEALAKHCRDARGSSISSSSQQGDGGMQLFVAVLQVIADGGTQQPQLRAATTLDSAGRTALRARAQAVLHVFAVSRVLLSGSEDSDGGFRTAAEVHAWLSGYSGQAPLVHTHAGVAPGWLFMAPAQQRATDAFFADFGGAATAKDTAASRTAAASSSEEWTAHDGARIESLRLMLDSPLGVYTTARMQAPAPGALTVHSVMTEITILKQHAMRGSKVASKMLIARMMWVDGDLALRDGRADDAVELYAGSLRASVADGDPFCGWWRADSKYAECADSVLARHPNSVDAHMLHAWSFMRSGRYKDSERVLTATIERHAPDDTHGVIHLRMCLYGNQGRWAEALQDASR 1572
            MDAAVDLTTYVHP+EAHAFKDAVTLAQQTGDFTRGGGNLESAVAIVSSAARAALGADARVTVAGSVAKGTTVMGSDVDLYVETS PV+LQQRQALEARLRQHPLTNAAHVQLKLKAIHMQLLGMDIDVVC+NTVE+G LP ADASVGA AALQLAVQALKIWARCATGGARKVPGRMMEALAKHCRDARGSSISSSSQQGDGGMQLFVAVLQ                                                                      APLVHTHA VAPGWLFMAPAQQRATDAFFADFGGAATAKD AASRTAA SSSEEWTAHDG RIESLRLMLDSPLGVYTTA MQAPAPGALTV +VMTEIT L QHAMRGSKVAS ML+ARMMWVDGDLALRDGRAD+AVELYA SLRASVADGDPFCGWWRADSKYAECADSVLARHPN VDAHMLHAWSFMRS R KDSERVLTATIERHAPDDTHGVIHLRMCLYGNQGRW EALQDASR
Sbjct:  306 MDAAVDLTTYVHPYEAHAFKDAVTLAQQTGDFTRGGGNLESAVAIVSSAARAALGADARVTVAGSVAKGTTVMGSDVDLYVETSKPVTLQQRQALEARLRQHPLTNAAHVQLKLKAIHMQLLGMDIDVVCANTVEYGELPAADASVGAHAALQLAVQALKIWARCATGGARKVPGRMMEALAKHCRDARGSSISSSSQQGDGGMQLFVAVLQ----------------------------------------------------------------------APLVHTHAEVAPGWLFMAPAQQRATDAFFADFGGAATAKDRAASRTAA-SSSEEWTAHDGTRIESLRLMLDSPLGVYTTAHMQAPAPGALTVDTVMTEITTLNQHAMRGSKVASNMLLARMMWVDGDLALRDGRADEAVELYAASLRASVADGDPFCGWWRADSKYAECADSVLARHPNGVDAHMLHAWSFMRSDRCKDSERVLTATIERHAPDDTHGVIHLRMCLYGNQGRWVEALQDASR 758          
BLAST of jgi.p|Trimin1|161886 vs. uniprot
Match: A0A7S0SBB4_9CHLO (Hypothetical protein n=1 Tax=Mantoniella antarctica TaxID=81844 RepID=A0A7S0SBB4_9CHLO)

HSP 1 Score: 512 bits (1319), Expect = 3.310e-162
Identity = 344/784 (43.88%), Postives = 443/784 (56.51%), Query Frame = 1
Query:   10 AVDLTTYVHPHEAHAFKDAVTLAQQTG---DFTRGGGNLESAVAIVSSAARAALGADARVTVAGSVAKGTTVMGSDVDLYVETSTPVSLQQRQALEARLRQHPLTNAAHVQLKLKAIHMQLLGMDIDVVCSNTVEFGLLPPADASVGADAALQLAVQALKIWARCATGGARKVPGRMMEALAKHCRDARGSSISSSSQQGDGGMQLFVAVLQVIADGGTQQPQLRAATTLDSAGRTALRARAQAVLHVFAVSRVLLSGSEDSDGGFRTAAEVHAWLSGYSGQAPLVHTHAGVAPGWLFMAPAQQRATDAFFADFGGAATAKDTAASRTAAASSSEEWTAHDGARIESLRLMLDSPLGVYTTARMQAPAPGALTV---HSVMTEITILKQHAMRGSKVASKMLIARMMWVDGDLALRDGRA---DD---AVELYAGSLRASVADGDPFCGWWRADS---KYAECADSVLARHPNSVDAHMLHAWSFMRSGRYKDSERVLTATIERHAPDDTHGVIHLRMCLYGNQGRWAEALQDASRCAALCPDEPIFHYWVAVGRRNTVRP--ETAAAGAAQTLSALQRFVAHAPPEGRKVPMAWYDIAMQEVLAGRGDARRGDAKFERARHAVREAQAAEVVTLPVFPATECEAKDTVLKTMAAFGLLPGDGKLNKDLLKRLYLGCGDD----VNALHKCGNDAFKRRDYYKAEAAYTKALELAPSHVELL-SNRAATRLELRWFTAAAADATAAAMLRPDWAKPHARAARAHLGRKDGAAALASARRAAALL 2295
            +V L TYV   EAHAF   V    +     D       L+  V+ V  AA    G D  V  AGSV K T V  SD+DLYV+++ P +L+Q QALEA L+ HP  N AHV+ K  AIH  L G+D DVVC+ TVE G  PP +  V  D A+  A +ALK+WA  A  G RK+PG  +E+LA HC+   GS+ S S   GDG MQL VAVLQ IADGG     LR AT L    R +L A AQA LHVFAVSR LL G     G FRTAAEV  WL G     PL  T AG+ PGWL   PAQQR  D  F          D        A + E+ +  DG    SL LMLD+PLG Y   R+ +P     T+    ++ +++  L+    +GS VA +ML +RM+W+ G+ ALR G A   DD   A   +A S+R++V+DGDPF G+ ++DS   +YA CA SVL+R    VDA +L AW+  R GR  D+E+VL   I  HA  D  G + +R  L GNQ RW E L+ +  C  LCP+EP+FHYW+A  R+N +     T    A   +S+ +RF+A A PEGRKV  A Y++A+ +++         D  F      VR+AQAAE   L +F    CEA+  +L+ +        DG + ++  + +      D      AL   GN AF   D+  A+  YTKAL+LAP   ELL  NRAA R++LRWFTAAAADA AA + RP WAK H R A+AH+GR+DGA+A A+A  AA LL
Sbjct:   90 SVRLATYVRVREAHAFARVVESESKLNPILDLV-----LDKIVSTVRDAAALVFGPDVHVAPAGSVKKNTQVGSSDLDLYVQSAAPATLEQVQALEALLKAHPGVNPAHVKHKKLAIHAHLFGVDCDVVCAETVEHGARPPVNERVAQDPAVAGAARALKLWAEQAAHGTRKIPGHALESLALHCQ---GSAPSISVTMGDGAMQLCVAVLQGIADGGGDADVLREATRLHKWTRESLAALAQATLHVFAVSRALLPG-----GCFRTAAEVRVWLIGSGHLWPLQKTLAGLVPGWLLCTPAQQRTADPRFCILAQGEGLVD--------AGTEEDSSQLDGIGNRSLALMLDTPLGAYV--RLTSPTSEQRTIVQNKTISSDLAQLQDLLEKGSSVAVRMLQSRMLWLTGEAALR-GEAISIDDCERAAGCFASSMRSAVSDGDPFSGYPQSDSSDERYATCAASVLSRDACHVDAMLLQAWALRRLGRLPDAEKVLNTLIAHHASSDARGALAMRANLRGNQSRWREFLEGSEYCVQLCPEEPMFHYWLATARKNLLDKTMNTTTTEATLAISSYRRFLAGAAPEGRKVCQALYEVALLQMIIASKALPPTDV-FAACIPTVRKAQAAEANRLSIFAGETCEAQSMMLEMLRMHEARGADGFVPEERFEEVLCDLPTDETERAEALRMRGNKAFASCDFSMADELYTKALQLAPGRAELLLGNRAAARIKLRWFTAAAADAMAALVARPGWAKAHYRIAQAHMGRRDGASAAAAASTAAVLL 848          
BLAST of jgi.p|Trimin1|161886 vs. uniprot
Match: A0A836CAU1_9STRA (NTP_transf_2 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CAU1_9STRA)

HSP 1 Score: 401 bits (1031), Expect = 1.450e-126
Identity = 221/290 (76.21%), Postives = 246/290 (84.83%), Query Frame = 1
Query:   88 GDFTRGGGNLESAVAIVSSAARAALGADARVTVAGSVAKGTTVMGSDVDLYVETSTPV--SLQQRQALEARLRQHPLTNAAHVQLKLKAIHMQLLGMDIDVVCSNTVEFGLLPPADASVGADAALQLAVQALKIWARCATGGARKVPGRMMEALAKHCRDARGSSISSSSQQGDGGMQLFVAVLQVIADGGTQQPQLRAATTLDSAGRTALRARAQAVLHVFAVSRVLLSGSEDSDGGFRTAAEVHAWLSGYSGQAPLVHTHAGVAPGWLFMAPAQQRATDAFFADFGGA 951
            GDF RG G LESA+A+VSSAARAA+G DARV +AGSV KGTTV GSDVDL +ETS PV  SL+QR+ALEARLRQHP TNAAHVQLK KAIHM+LLGMDIDVVC++TVE+G+LPPAD+ VGAD ALQLAV+ALKIWA+CATGGARKVP R MEALA HCRDAR SS SS+   G+GGMQLFVAVLQ +ADGGTQQ +LRAAT  D+A R ALRARAQA LH+FAVSRVLLSGS   DGGFRTAAEVHAW+SGYSGQ  LV T AG  P WL M  A+QRA+DA FA+FGGA
Sbjct:    2 GDFVRGNGMLESAIALVSSAARAAVGEDARVVLAGSVGKGTTVRGSDVDLLIETSKPVRQSLEQRRALEARLRQHPSTNAAHVQLKQKAIHMELLGMDIDVVCAHTVEYGVLPPADSRVGADTALQLAVRALKIWAQCATGGARKVPERAMEALAMHCRDARASSSSSALPLGEGGMQLFVAVLQALADGGTQQAELRAATKFDAAARNALRARAQASLHMFAVSRVLLSGS---DGGFRTAAEVHAWISGYSGQGTLVETLAGWVPSWLIMTLAEQRASDALFAEFGGA 288          
BLAST of jgi.p|Trimin1|161886 vs. uniprot
Match: A0A482UW09_9ARCH (Uncharacterized protein (Fragment) n=1 Tax=archaeon TaxID=1906665 RepID=A0A482UW09_9ARCH)

HSP 1 Score: 318 bits (816), Expect = 8.040e-92
Identity = 260/754 (34.48%), Postives = 371/754 (49.20%), Query Frame = 1
Query:   13 VDLTTYVHPHEAHAFKDAVT-LAQQTGDFTRGGGNLESAVAIVSSAARAALGADARVTVAGSVAKGTTVMGSDVDLYVETSTPVSLQQRQALEARLRQHPLTNAAHVQLKLKAIHMQLLGMDIDVVCSNTVEFGLLPPADASVGADAALQLAVQALKIWARCATGGARKVPGRMMEALAKHCRDARGSSISSSSQQGDGGMQLFVAVLQVIADG-GTQQPQLRAATTLDSAGRTA-LRARAQAVLHVFAVSRVLLSGSEDSDGGFRTAAEVHAWLSGYSGQAPLVHTHAGVAPGWLFMAPAQQRATDAFFADFGGAATAKDTAASRTAAASSSEEWTAHDGARIESLRLMLDSPLGVYTTA-----RMQAPAPGALTVHSVMTEITILKQHAMRGSKVASKMLIARMMWVDGDLALRDGRADDAVELYAGSLRASVADGDPFCGWWRAD-SKYAECADSVLARHPNSVDAHMLHAWSFMRSGRYKDSERVLTATIERHAPDDTHGVIHLRMCLYGNQGRWAEALQDASRCAALCPDEPIFHYWVAVGRRNTVRPETAAAGAAQTLSA--LQRFVAHAPPEGRKVPMAWYDIAMQEVLAGRGDARRGDAKFERARHAVREAQAAEVVTLPVFPATECEAKDTVLKTMAAFGL-LPGDGKLNKDLLKRLYLGCGDDVNALHKCGNDAFKRRDYYKAEAAYTKALELAPSHVELLSNRAATRLELRWFTAAAADATAAAMLRPDWAKPHARAARAHL 2238
            VDL+ YV   E+  F + +T L+  T  F      L +    +++ A++  G D    + GSVAK T V  SD D Y+ T+ P++ +QR A   RL+   + +  HV L  KAIH+     DIDVVCSNTVE+G L   D ++ AD  L  AV+ALKIWA+    G  KVPG  +E +A+  +  R   +         GM +FV+VLQ I D  GT+     + T     G T+ +R  A+  +HVF  SR +        G FRT AE+  W+      AP   T  G  P WL     +  A+    + F           +R A A+++     H    + + +L+L SPLG YT A     R +  A   +  H     +  L   A  GS V+ +M   R +W  G+ AL       A+ L+  SLR S  D DPF G +  D S Y    D VLA  P + DA ++ A  FM    + ++E  L   I +H+PDD +G +H  +CL G   RW +AL  + RC  + P+EPIF+YW  + R+ T++ +T  A A   L    LQ+F+  A P GRKV  AWY+I+   ++A +G+    DA        V  AQ AE   LPVFP    +AK    K +    + LP +    K  L                 GN +FK ++Y +A   YT AL +AP + ++  NRAA    + W+TA+A DA  A  L+PDW+KP+ RAA A+L
Sbjct:   27 VDLSEYVSEAESRCFDEYITSLSTTTEMFVN---RLITYCETITNEAKSHFGPDTTTEICGSVAKETFVECSDCDFYIHTAQPLTREQRLAFTRRLKS--VFSDYHVGLGKKAIHVSTDSGDIDVVCSNTVEYGELTRIDKTIAADTELTYAVRALKIWAKWGIAG--KVPGHCLEKMAQEVQ--RAYPLLPKKTSSSHGMHIFVSVLQSILDSEGTRIFGFPSRT-----GHTSNIRRLARTTVHVFVASRAIR-------GEFRTPAEIAGWVCSALADAPQ-DTKIGPVPSWLLSVEGRPDASSHLISIFDRH--------TRKAPATTTAVPLCHGEVHMHAFQLLLSSPLGQYTMAGSSSSRSEIEA-SRMPDHEDFKRLQAL---ASGGSLVSHRMCHTRSLWYKGEAALEAKLIFPAIALFGSSLRHSTYDSDPFSGRFPIDHSDYFAACDEVLATDPKNTDARLVRAHLFMSRHHWSNAELELLEAI-KHSPDDAYGGLHKMVCLLGCVSRWEDALPYSERCVEIEPEEPIFYYWRGICRKITMK-KTRDAKALSRLCIYDLQKFLQLAAPGGRKVAQAWYEISCLRMVANQGEDM--DAMLRSLEKDVVLAQQAERDQLPVFPPGTYDAKSLAEKLLEMTKMKLPKNSAEEKQFL-----------------GNASFKSQNYVQAIDYYTTALTMAPDNFKVCCNRAAAYAAMGWYTASARDADIATQLKPDWSKPYYRAAVAYL 725          
BLAST of jgi.p|Trimin1|161886 vs. uniprot
Match: A0A061S0W4_9CHLO (Tetratricopeptide repeat protein 1-like n=1 Tax=Tetraselmis sp. GSL018 TaxID=582737 RepID=A0A061S0W4_9CHLO)

HSP 1 Score: 59.3 bits (142), Expect = 6.910e-7
Identity = 30/76 (39.47%), Postives = 46/76 (60.53%), Query Frame = 1
Query: 1981 LGCGDDVNALHKCGNDAFKRRDYYKAEAAYTKALELAPSHVELLSNRAATRLELRWFTAAAADATAAAMLRPDWAK 2208
            +GC D V  L + GN  +K++++ KA A Y++A++  P++  L SNRA   L+L+  T A  DA     L+PDW K
Sbjct:    1 MGCEDVVQVLKEQGNTEYKKQNFLKAAALYSRAIKEDPNNAVLFSNRAEALLQLKKVTKALQDAEECIKLKPDWEK 76          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|161886 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
A0A835Z5L3_9STRA0.000e+0100.00NTP_transf_2 domain-containing protein n=2 Tax=Tri... [more]
A0A836CEC5_9STRA8.380e-25581.87Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S0SBB4_9CHLO3.310e-16243.88Hypothetical protein n=1 Tax=Mantoniella antarctic... [more]
A0A836CAU1_9STRA1.450e-12676.21NTP_transf_2 domain-containing protein n=1 Tax=Tri... [more]
A0A482UW09_9ARCH8.040e-9234.48Uncharacterized protein (Fragment) n=1 Tax=archaeo... [more]
A0A061S0W4_9CHLO6.910e-739.47Tetratricopeptide repeat protein 1-like n=1 Tax=Te... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_18contigContig_18:1034674..1037362 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|161886|e_gw1.18.253.1
Descriptionankyrin repeat
COG categoryO
Max annot lvl35493|Streptophyta
EggNOG OGsCOG0457@1|root,COG0666@1|root,KOG0504@2759|Eukaryota,KOG0548@2759|Eukaryota,37HF2@33090|Viridiplantae,3G8J9@35493|Streptophyta
Evalue3.04e-06
Seed ortholog218851.Aquca_049_00060.1
Hectar predicted targeting categoryother localisation
TranscriptId162208
TrackFilteredModels1
ProteinId161886
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|161886gene_1432Tribonema minus UTEX_B_3156 geneContig_18 1034674..1037362 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|161886Trimin1|161886|e_gw1.18.253.1Tribonema minus UTEX_B_3156 polypeptideContig_18 1034674..1037362 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_1432_2exon_1432_2Tribonema minus UTEX_B_3156 exonContig_18 1034674..1035013 -
exon_1432_1exon_1432_1Tribonema minus UTEX_B_3156 exonContig_18 1035408..1037362 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_1432CDS_1432Tribonema minus UTEX_B_3156 CDSContig_18 1035408..1037362 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_1432 ID=mRNA_1432|Name=jgi.p|Trimin1|161886|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=2295bp|location=Sequence derived from alignment at Contig_18:1034674..1037362- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGGACGCTGCGGTCGACTTGACCACCTACGTGCACCCCCACGAGGCTCA
CGCCTTCAAAGATGCGGTGACTTTAGCTCAGCAGACCGGTGACTTTACGC
GTGGCGGCGGCAACTTGGAGTCTGCCGTGGCTATAGTGAGCAGTGCGGCG
CGCGCTGCTCTGGGTGCGGATGCTCGTGTCACCGTGGCCGGCAGCGTCGC
CAAGGGGACTACGGTCATGGGCAGCGACGTCGACCTATACGTCGAGACGT
CAACACCAGTGTCGCTTCAGCAACGCCAAGCACTGGAGGCGCGCCTGAGA
CAGCACCCTCTCACCAACGCTGCGCACGTACAGCTCAAGCTCAAAGCTAT
TCACATGCAGCTGCTGGGGATGGACATTGACGTGGTCTGCTCCAACACTG
TTGAGTTCGGCCTACTGCCCCCCGCGGACGCAAGCGTGGGAGCAGATGCG
GCACTGCAGCTGGCGGTGCAAGCGCTGAAGATCTGGGCGCGATGTGCCAC
CGGAGGAGCACGCAAAGTCCCGGGACGCATGATGGAGGCGCTTGCTAAGC
ACTGCAGGGATGCTCGCGGCTCGTCTATCAGCTCGAGTTCACAGCAGGGG
GATGGTGGCATGCAACTCTTTGTTGCCGTACTGCAGGTCATTGCAGACGG
TGGCACCCAGCAGCCTCAGCTTCGCGCAGCTACAACGCTTGACTCTGCCG
GACGCACCGCTCTCCGTGCGCGCGCGCAAGCTGTGCTACACGTCTTTGCG
GTGTCGCGTGTCTTACTCTCGGGCAGCGAGGACAGCGACGGAGGGTTTCG
GACTGCTGCGGAGGTGCACGCGTGGCTCTCGGGGTACTCGGGGCAGGCGC
CGCTTGTACACACCCACGCAGGAGTTGCCCCAGGGTGGCTCTTCATGGCG
CCAGCTCAGCAGCGCGCCACAGACGCCTTCTTTGCCGATTTCGGGGGCGC
AGCAACGGCAAAGGACACGGCAGCTAGCAGAACGGCGGCGGCCAGCAGCT
CTGAGGAGTGGACAGCTCATGACGGTGCGCGCATCGAGTCTCTGCGCTTG
ATGCTAGACAGCCCCCTCGGTGTATACACAACCGCACGAATGCAAGCCCC
AGCGCCAGGTGCGCTTACGGTCCATAGCGTCATGACAGAAATCACCATCC
TCAAGCAGCATGCCATGCGGGGGTCCAAAGTAGCCAGCAAGATGCTGATC
GCGCGCATGATGTGGGTTGATGGCGACCTAGCGTTACGCGACGGGCGCGC
AGATGATGCTGTTGAGCTCTATGCGGGATCGCTGCGTGCGTCCGTGGCAG
ACGGCGACCCATTCTGCGGATGGTGGCGTGCGGACAGCAAGTATGCAGAG
TGCGCTGATTCCGTCCTTGCCCGCCACCCTAACAGCGTCGACGCCCACAT
GCTGCACGCATGGTCATTTATGCGCAGCGGTCGCTACAAAGACTCAGAGC
GGGTCTTGACGGCCACGATAGAGCGCCACGCACCCGATGATACACATGGT
GTCATTCACCTGCGCATGTGTCTATACGGCAACCAGGGGCGTTGGGCGGA
AGCCCTGCAGGACGCATCTCGGTGTGCGGCCCTATGCCCGGACGAGCCCA
TATTTCACTACTGGGTGGCGGTGGGGCGCCGCAACACCGTGCGGCCCGAG
ACAGCCGCTGCTGGCGCTGCGCAAACGCTGTCAGCACTTCAGCGTTTTGT
AGCGCACGCGCCACCGGAGGGTCGCAAAGTGCCCATGGCGTGGTACGACA
TCGCCATGCAGGAGGTGCTCGCCGGCCGCGGCGACGCACGCCGGGGCGAT
GCGAAGTTCGAGCGCGCCAGACACGCGGTTCGCGAGGCGCAAGCAGCTGA
GGTTGTGACGCTGCCTGTGTTCCCCGCCACCGAGTGCGAGGCGAAAGACA
CAGTGCTGAAAACCATGGCGGCGTTTGGGTTGCTCCCTGGAGACGGGAAG
CTGAACAAAGATCTGCTGAAGCGTCTGTACTTGGGCTGCGGAGATGATGT
CAACGCGCTCCACAAGTGCGGCAATGACGCCTTCAAGCGCAGAGACTACT
ACAAGGCAGAGGCAGCTTATACCAAGGCACTGGAGCTAGCACCGTCGCAT
GTCGAGCTGCTGTCCAACCGTGCCGCAACGCGACTTGAGCTGCGCTGGTT
TACGGCAGCGGCGGCGGACGCTACAGCAGCGGCAATGCTTCGCCCAGACT
GGGCAAAGCCGCATGCTCGAGCTGCTCGAGCGCATCTCGGGCGCAAAGAC
GGTGCTGCTGCGCTAGCGTCAGCGCGCCGTGCAGCGGCGCTGCTT
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protein sequence of jgi.p|Trimin1|161886

>Trimin1|161886|e_gw1.18.253.1 ID=Trimin1|161886|e_gw1.18.253.1|Name=jgi.p|Trimin1|161886|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=765bp
MDAAVDLTTYVHPHEAHAFKDAVTLAQQTGDFTRGGGNLESAVAIVSSAA
RAALGADARVTVAGSVAKGTTVMGSDVDLYVETSTPVSLQQRQALEARLR
QHPLTNAAHVQLKLKAIHMQLLGMDIDVVCSNTVEFGLLPPADASVGADA
ALQLAVQALKIWARCATGGARKVPGRMMEALAKHCRDARGSSISSSSQQG
DGGMQLFVAVLQVIADGGTQQPQLRAATTLDSAGRTALRARAQAVLHVFA
VSRVLLSGSEDSDGGFRTAAEVHAWLSGYSGQAPLVHTHAGVAPGWLFMA
PAQQRATDAFFADFGGAATAKDTAASRTAAASSSEEWTAHDGARIESLRL
MLDSPLGVYTTARMQAPAPGALTVHSVMTEITILKQHAMRGSKVASKMLI
ARMMWVDGDLALRDGRADDAVELYAGSLRASVADGDPFCGWWRADSKYAE
CADSVLARHPNSVDAHMLHAWSFMRSGRYKDSERVLTATIERHAPDDTHG
VIHLRMCLYGNQGRWAEALQDASRCAALCPDEPIFHYWVAVGRRNTVRPE
TAAAGAAQTLSALQRFVAHAPPEGRKVPMAWYDIAMQEVLAGRGDARRGD
AKFERARHAVREAQAAEVVTLPVFPATECEAKDTVLKTMAAFGLLPGDGK
LNKDLLKRLYLGCGDDVNALHKCGNDAFKRRDYYKAEAAYTKALELAPSH
VELLSNRAATRLELRWFTAAAADATAAAMLRPDWAKPHARAARAHLGRKD
GAAALASARRAAALL
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mRNA from alignment at Contig_18:1034674..1037362-

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_1432 ID=mRNA_1432|Name=jgi.p|Trimin1|161886|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=2689bp|location=Sequence derived from alignment at Contig_18:1034674..1037362- (Tribonema minus UTEX_B_3156 )
ATGGACGCTGCGGTCGACTTGACCACCTACGTGCACCCCCACGAGGCTCA CGCCTTCAAAGATGCGGTGACTTTAGCTCAGCAGACCGGTGACTTTACGC GTGGCGGCGGCAACTTGGAGTCTGCCGTGGCTATAGTGAGCAGTGCGGCG CGCGCTGCTCTGGGTGCGGATGCTCGTGTCACCGTGGCCGGCAGCGTCGC CAAGGGGACTACGGTCATGGGCAGCGACGTCGACCTATACGTCGAGACGT CAACACCAGTGTCGCTTCAGCAACGCCAAGCACTGGAGGCGCGCCTGAGA CAGCACCCTCTCACCAACGCTGCGCACGTACAGCTCAAGCTCAAAGCTAT TCACATGCAGCTGCTGGGGATGGACATTGACGTGGTCTGCTCCAACACTG TTGAGTTCGGCCTACTGCCCCCCGCGGACGCAAGCGTGGGAGCAGATGCG GCACTGCAGCTGGCGGTGCAAGCGCTGAAGATCTGGGCGCGATGTGCCAC CGGAGGAGCACGCAAAGTCCCGGGACGCATGATGGAGGCGCTTGCTAAGC ACTGCAGGGATGCTCGCGGCTCGTCTATCAGCTCGAGTTCACAGCAGGGG GATGGTGGCATGCAACTCTTTGTTGCCGTACTGCAGGTCATTGCAGACGG TGGCACCCAGCAGCCTCAGCTTCGCGCAGCTACAACGCTTGACTCTGCCG GACGCACCGCTCTCCGTGCGCGCGCGCAAGCTGTGCTACACGTCTTTGCG GTGTCGCGTGTCTTACTCTCGGGCAGCGAGGACAGCGACGGAGGGTTTCG GACTGCTGCGGAGGTGCACGCGTGGCTCTCGGGGTACTCGGGGCAGGCGC CGCTTGTACACACCCACGCAGGAGTTGCCCCAGGGTGGCTCTTCATGGCG CCAGCTCAGCAGCGCGCCACAGACGCCTTCTTTGCCGATTTCGGGGGCGC AGCAACGGCAAAGGACACGGCAGCTAGCAGAACGGCGGCGGCCAGCAGCT CTGAGGAGTGGACAGCTCATGACGGTGCGCGCATCGAGTCTCTGCGCTTG ATGCTAGACAGCCCCCTCGGTGTATACACAACCGCACGAATGCAAGCCCC AGCGCCAGGTGCGCTTACGGTCCATAGCGTCATGACAGAAATCACCATCC TCAAGCAGCATGCCATGCGGGGGTCCAAAGTAGCCAGCAAGATGCTGATC GCGCGCATGATGTGGGTTGATGGCGACCTAGCGTTACGCGACGGGCGCGC AGATGATGCTGTTGAGCTCTATGCGGGATCGCTGCGTGCGTCCGTGGCAG ACGGCGACCCATTCTGCGGATGGTGGCGTGCGGACAGCAAGTATGCAGAG TGCGCTGATTCCGTCCTTGCCCGCCACCCTAACAGCGTCGACGCCCACAT GCTGCACGCATGGTCATTTATGCGCAGCGGTCGCTACAAAGACTCAGAGC GGGTCTTGACGGCCACGATAGAGCGCCACGCACCCGATGATACACATGGT GTCATTCACCTGCGCATGTGTCTATACGGCAACCAGGGGCGTTGGGCGGA AGCCCTGCAGGACGCATCTCGGTGTGCGGCCCTATGCCCGGACGAGCCCA TATTTCACTACTGGGTGGCGGTGGGGCGCCGCAACACCGTGCGGCCCGAG ACAGCCGCTGCTGGCGCTGCGCAAACGCTGTCAGCACTTCAGCGTTTTGT AGCGCACGCGCCACCGGAGGGTCGCAAAGTGCCCATGGCGTGGTACGACA TCGCCATGCAGGAGGTGCTCGCCGGCCGCGGCGACGCACGCCGGGGCGAT GCGAAGTTCGAGCGCGCCAGACACGCGGTTCGCGAGGCGCAAGCAGCTGA GGTTGTGACGCTGCCTGTGTTCCCCGCCACCGAGTGCGAGGCGAAAGACA CAGTGCTGAAAACCATGGCGGCGTTTGGGTTGCTCCCTGGAGACGGGAAG CTGAAGTCATCATCGCACGACACAGGCAAGGACAATTGCCGGATCATTGC CAGTCCTGCAAGTCAGAACACTATAAAGACCTTTTTCCAATAGCAGCGCA TCAGCAGTAGAAGTAGTACTCGCATTGCATATTGTCATGCTGTAGCCCAC TACGTCAGCAGCATCTCCTGATCTCTCACTTGTTGGAGTTGATCATGAAG TACTGATATGCTGATGAATCGAATCCCATGTCACTTTGCTCTGTGTCATA GCTTTGCTGTACGCATCTGCTTCAGAAACTTGCTGTATGCATCTGCTTCA GAAACTTGTAAAAGTTGGGTGTGTTGACTGGTTTTCCCACAGCACATATC GCTCTGTTGCTCTTTGGCTTTCAGGGTCGGGCGAGGTGCCTCCCAGCAGC AAAGATCTGCTGAAGCGTCTGTACTTGGGCTGCGGAGATGATGTCAACGC GCTCCACAAGTGCGGCAATGACGCCTTCAAGCGCAGAGACTACTACAAGG CAGAGGCAGCTTATACCAAGGCACTGGAGCTAGCACCGTCGCATGTCGAG CTGCTGTCCAACCGTGCCGCAACGCGACTTGAGCTGCGCTGGTTTACGGC AGCGGCGGCGGACGCTACAGCAGCGGCAATGCTTCGCCCAGACTGGGCAA AGCCGCATGCTCGAGCTGCTCGAGCGCATCTCGGGCGCAAAGACGGTGCT GCTGCGCTAGCGTCAGCGCGCCGTGCAGCGGCGCTGCTT
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Coding sequence (CDS) from alignment at Contig_18:1034674..1037362-

>mRNA_1432 ID=mRNA_1432|Name=jgi.p|Trimin1|161886|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=2295bp|location=Sequence derived from alignment at Contig_18:1034674..1037362- (Tribonema minus UTEX_B_3156 )
ATGGACGCTGCGGTCGACTTGACCACCTACGTGCACCCCCACGAGGCTCA
CGCCTTCAAAGATGCGGTGACTTTAGCTCAGCAGACCGGTGACTTTACGC
GTGGCGGCGGCAACTTGGAGTCTGCCGTGGCTATAGTGAGCAGTGCGGCG
CGCGCTGCTCTGGGTGCGGATGCTCGTGTCACCGTGGCCGGCAGCGTCGC
CAAGGGGACTACGGTCATGGGCAGCGACGTCGACCTATACGTCGAGACGT
CAACACCAGTGTCGCTTCAGCAACGCCAAGCACTGGAGGCGCGCCTGAGA
CAGCACCCTCTCACCAACGCTGCGCACGTACAGCTCAAGCTCAAAGCTAT
TCACATGCAGCTGCTGGGGATGGACATTGACGTGGTCTGCTCCAACACTG
TTGAGTTCGGCCTACTGCCCCCCGCGGACGCAAGCGTGGGAGCAGATGCG
GCACTGCAGCTGGCGGTGCAAGCGCTGAAGATCTGGGCGCGATGTGCCAC
CGGAGGAGCACGCAAAGTCCCGGGACGCATGATGGAGGCGCTTGCTAAGC
ACTGCAGGGATGCTCGCGGCTCGTCTATCAGCTCGAGTTCACAGCAGGGG
GATGGTGGCATGCAACTCTTTGTTGCCGTACTGCAGGTCATTGCAGACGG
TGGCACCCAGCAGCCTCAGCTTCGCGCAGCTACAACGCTTGACTCTGCCG
GACGCACCGCTCTCCGTGCGCGCGCGCAAGCTGTGCTACACGTCTTTGCG
GTGTCGCGTGTCTTACTCTCGGGCAGCGAGGACAGCGACGGAGGGTTTCG
GACTGCTGCGGAGGTGCACGCGTGGCTCTCGGGGTACTCGGGGCAGGCGC
CGCTTGTACACACCCACGCAGGAGTTGCCCCAGGGTGGCTCTTCATGGCG
CCAGCTCAGCAGCGCGCCACAGACGCCTTCTTTGCCGATTTCGGGGGCGC
AGCAACGGCAAAGGACACGGCAGCTAGCAGAACGGCGGCGGCCAGCAGCT
CTGAGGAGTGGACAGCTCATGACGGTGCGCGCATCGAGTCTCTGCGCTTG
ATGCTAGACAGCCCCCTCGGTGTATACACAACCGCACGAATGCAAGCCCC
AGCGCCAGGTGCGCTTACGGTCCATAGCGTCATGACAGAAATCACCATCC
TCAAGCAGCATGCCATGCGGGGGTCCAAAGTAGCCAGCAAGATGCTGATC
GCGCGCATGATGTGGGTTGATGGCGACCTAGCGTTACGCGACGGGCGCGC
AGATGATGCTGTTGAGCTCTATGCGGGATCGCTGCGTGCGTCCGTGGCAG
ACGGCGACCCATTCTGCGGATGGTGGCGTGCGGACAGCAAGTATGCAGAG
TGCGCTGATTCCGTCCTTGCCCGCCACCCTAACAGCGTCGACGCCCACAT
GCTGCACGCATGGTCATTTATGCGCAGCGGTCGCTACAAAGACTCAGAGC
GGGTCTTGACGGCCACGATAGAGCGCCACGCACCCGATGATACACATGGT
GTCATTCACCTGCGCATGTGTCTATACGGCAACCAGGGGCGTTGGGCGGA
AGCCCTGCAGGACGCATCTCGGTGTGCGGCCCTATGCCCGGACGAGCCCA
TATTTCACTACTGGGTGGCGGTGGGGCGCCGCAACACCGTGCGGCCCGAG
ACAGCCGCTGCTGGCGCTGCGCAAACGCTGTCAGCACTTCAGCGTTTTGT
AGCGCACGCGCCACCGGAGGGTCGCAAAGTGCCCATGGCGTGGTACGACA
TCGCCATGCAGGAGGTGCTCGCCGGCCGCGGCGACGCACGCCGGGGCGAT
GCGAAGTTCGAGCGCGCCAGACACGCGGTTCGCGAGGCGCAAGCAGCTGA
GGTTGTGACGCTGCCTGTGTTCCCCGCCACCGAGTGCGAGGCGAAAGACA
CAGTGCTGAAAACCATGGCGGCGTTTGGGTTGCTCCCTGGAGACGGGAAG
CTGAACAAAGATCTGCTGAAGCGTCTGTACTTGGGCTGCGGAGATGATGT
CAACGCGCTCCACAAGTGCGGCAATGACGCCTTCAAGCGCAGAGACTACT
ACAAGGCAGAGGCAGCTTATACCAAGGCACTGGAGCTAGCACCGTCGCAT
GTCGAGCTGCTGTCCAACCGTGCCGCAACGCGACTTGAGCTGCGCTGGTT
TACGGCAGCGGCGGCGGACGCTACAGCAGCGGCAATGCTTCGCCCAGACT
GGGCAAAGCCGCATGCTCGAGCTGCTCGAGCGCATCTCGGGCGCAAAGAC
GGTGCTGCTGCGCTAGCGTCAGCGCGCCGTGCAGCGGCGCTGCTT
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