mRNA_14321 (mRNA) Tribonema minus UTEX_B_3156
Overview
Homology
BLAST of jgi.p|Trimin1|176861 vs. uniprot
Match: A0A836CL79_9STRA (ABC-2 family transporter protein-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CL79_9STRA) HSP 1 Score: 330 bits (847), Expect = 1.140e-114 Identity = 164/164 (100.00%), Postives = 164/164 (100.00%), Query Frame = 1 Query: 1 SYHGLPGWLGQLTELKYRTCLNNEQASYTARTHPLPVTAQESIETQTILSVLACLFIIIPLCYAPAAFVTFVVRERATKSKRLQLMSGASPLSYWLATYLWDVTLFMVLAAACMGCLYTYGQHAARCFVELSESAGAMALLFVLYGFSVLPLCYLYTFMFDNHR 492 SYHGLPGWLGQLTELKYRTCLNNEQASYTARTHPLPVTAQESIETQTILSVLACLFIIIPLCYAPAAFVTFVVRERATKSKRLQLMSGASPLSYWLATYLWDVTLFMVLAAACMGCLYTYGQHAARCFVELSESAGAMALLFVLYGFSVLPLCYLYTFMFDNHR Sbjct: 1 SYHGLPGWLGQLTELKYRTCLNNEQASYTARTHPLPVTAQESIETQTILSVLACLFIIIPLCYAPAAFVTFVVRERATKSKRLQLMSGASPLSYWLATYLWDVTLFMVLAAACMGCLYTYGQHAARCFVELSESAGAMALLFVLYGFSVLPLCYLYTFMFDNHR 164
BLAST of jgi.p|Trimin1|176861 vs. uniprot
Match: D7G7Z8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7Z8_ECTSI) HSP 1 Score: 170 bits (430), Expect = 7.660e-46 Identity = 89/165 (53.94%), Postives = 112/165 (67.88%), Query Frame = 1 Query: 7 HGLPGWLGQLTELKYRTCLNNE-----QASYTARTHPLPVTAQESIETQTILSVLACLFIIIPLCYAPAAFVTFVVRERATKSKRLQLMSGASPLSYWLATYLWDVTLFMVLAAACMGCLYTYGQHAARCFVELSESAGAMALLFVLYGFSVLPLCYLYTFMFDN 486 H LP W+G+LT ++ C N QASYT R+HPLP+TA ES+E QT+LS+L L + IPLCYAPAAFVTF+VRERA KSKR+QL+SGASPL+YW +TYLWD LF VL M YG+ A++ F+ ++ L + YG S LPL YLY+F FD Sbjct: 1417 HALPAWVGELTARTFQACATNRGLEGGQASYTVRSHPLPLTATESLEVQTMLSLLVSLLVTIPLCYAPAAFVTFLVRERACKSKRVQLVSGASPLAYWASTYLWDALLFFVLTVLVMLTFAAYGKDASKVFMMRWDALLGTWGLLLSYGLSSLPLSYLYSFAFDG 1581
BLAST of jgi.p|Trimin1|176861 vs. uniprot
Match: A0A482RV75_9ARCH (ATP-binding cassette domain-containing protein (Fragment) n=1 Tax=archaeon TaxID=1906665 RepID=A0A482RV75_9ARCH) HSP 1 Score: 163 bits (412), Expect = 1.850e-43 Identity = 81/163 (49.69%), Postives = 109/163 (66.87%), Query Frame = 1 Query: 1 SYHGLPGWLGQLTELKYRTCLNNEQASYTARTHPLPVTAQESIETQTILSVLACLFIIIPLCYAPAAFVTFVVRERATKSKRLQLMSGASPLSYWLATYLWDVTLFMVLAAACMGCLYTYGQHAARCFVELSESAGAMALLFVLYGFSVLPLCYLYTFMFDNH 489 S H + W G+L E ++TC NN A Y + HPLP+T QES+ + ILSVL +FI++PLCY PAAFV+F+VRER TK K LQ+ SG SP YW+ TYLWD+TLF +LA + Y G+ ++ FV +ES A+ L ++YG S +PL YLY+F F N+ Sbjct: 574 SPHAVAAWEGELVESAFQTCQNNPDAEYYVKNHPLPLTTQESLTIRVILSVLTSIFILVPLCYIPAAFVSFLVRERVTKCKHLQITSGVSPALYWVGTYLWDMTLFCILAGFILIAFYIVGKSSSSVFVGDAESNLAVLCLVLVYGASAIPLNYLYSFGFSNY 736
BLAST of jgi.p|Trimin1|176861 vs. uniprot
Match: A0A482RS57_9ARCH (ATP-binding cassette domain-containing protein (Fragment) n=1 Tax=archaeon TaxID=1906665 RepID=A0A482RS57_9ARCH) HSP 1 Score: 141 bits (355), Expect = 8.730e-36 Identity = 69/162 (42.59%), Postives = 100/162 (61.73%), Query Frame = 1 Query: 1 SYHGLPGWLGQLTELKYRTCLNNEQASYTARTHPLPVTAQESIETQTILSVLACLFIIIPLCYAPAAFVTFVVRERATKSKRLQLMSGASPLSYWLATYLWDVTLFMVLAAACMGCLYTYGQHAARCFVELSESAGAMALLFVLYGFSVLPLCYLYTFMFDN 486 S H + W G+L + ++TC N ASY HP+P T ++ + LS+L +FI++PL +PA++V FVV+E+ATK LQ+ SG SP YWL+TY WD+T F+VLA + + G A FV SE++ + LL + YG S +PL Y+Y+F FDN Sbjct: 512 SPHAIAAWQGELVQQVFQTCTGNPTASYIVHNHPIPQTRSTLLKNRVFLSLLTSIFILVPLSQSPASYVAFVVKEKATKCTHLQMASGVSPSIYWLSTYFWDMTSFIVLALCVLVAFFVVGPGNASVFVGTSETSTCVLLLILSYGASAIPLNYIYSFAFDN 673
BLAST of jgi.p|Trimin1|176861 vs. uniprot
Match: A0A7S3DQC5_9STRA (Hypothetical protein n=1 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A7S3DQC5_9STRA) HSP 1 Score: 139 bits (350), Expect = 4.290e-35 Identity = 71/163 (43.56%), Postives = 101/163 (61.96%), Query Frame = 1 Query: 1 SYHGLPGWLGQLTELKYRTCLNNEQASYTARTHPLPVTAQESIETQTILSVLACLFIIIPLCYAPAAFVTFVVRERATKSKRLQLMSGASPLSYWLATYLWDVTLFMVLAAACMGCLYTYGQHAARCFVELSESAGAMALLFVLYGFSVLPLCYLYTFMFDNH 489 S H + + + +++C+ A + HPLP+T Q+S+E +TILSVLA +FI+IP C+ P AF+ F+VRE+A+KSK LQL+SG + +YW++ Y +DV+ F +L M YG+ AA+ FV E+ G ALL YG SVLP YL FDNH Sbjct: 653 SPHAVATFNQHYADFVFKSCIGKTSARLVSENHPLPLTTQQSLEIKTILSVLASMFILIPYCFIPGAFIVFLVREKASKSKHLQLVSGTNITAYWMSAYFYDVSRFFLLTVLVMAVFLMYGKDAAQVFVGTWEAFGCTALLTFGYGLSVLPFAYLLARRFDNH 815
BLAST of jgi.p|Trimin1|176861 vs. uniprot
Match: A0A7S1VG15_9STRA (Hypothetical protein n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1VG15_9STRA) HSP 1 Score: 137 bits (345), Expect = 1.980e-34 Identity = 73/163 (44.79%), Postives = 99/163 (60.74%), Query Frame = 1 Query: 1 SYHGLPGWLGQLTELKYRTCLNNEQASYTARTHPLPVTAQESIETQTILSVLACLFIIIPLCYAPAAFVTFVVRERATKSKRLQLMSGASPLSYWLATYLWDVTLFMVLAAACMGCLYTYGQHAARCFVELSESAGAMALLFVLYGFSVLPLCYLYTFMFDNH 489 S H + E ++TC N+ A + HPLP+T Q+ IE QT+LS+LA LF++IP CY PAAF F+V+ER +KSK LQL+SG + +YWL++YLWD+ L++ L+ M YG +A FV ES LL YG S LP YL + MF+NH Sbjct: 388 SPHAAAAFHQTYNEFLFKTCSQNDDARLVSVNHPLPLTTQQEIEVQTVLSILASLFLLIPYCYIPAAFAVFLVKERVSKSKHLQLVSGVNLSAYWLSSYLWDLGLWLALSVLIMLIFLMYGTSSAAVFVGDVESFFCTFLLTFGYGLSALPFAYLLSRMFNNH 550
BLAST of jgi.p|Trimin1|176861 vs. uniprot
Match: A0A0M0J7C4_9EUKA (ATP-binding cassette sub-family a member 3 n=1 Tax=Chrysochromulina tobinii TaxID=1460289 RepID=A0A0M0J7C4_9EUKA) HSP 1 Score: 136 bits (343), Expect = 3.890e-34 Identity = 72/173 (41.62%), Postives = 106/173 (61.27%), Query Frame = 1 Query: 1 SYHGLPGWLGQLTELKYRTC----------LNNEQASYTARTHPLPVTAQESIETQTILSVLACLFIIIPLCYAPAAFVTFVVRERATKSKRLQLMSGASPLSYWLATYLWDVTLFMVLAAACMGCLYTYGQHAARCFVELSESAGAMALLFVLYGFSVLPLCYLYTFMFDNH 489 S+H LP +L ++T ++R + + SY HPLP+T + + + IL+ LA LF++IP CY PA+ FVV+ERA K+K LQL+SGA P YWLA+YLWD+TLF A+ CM + YG+ +V S+ A A L+ + YG SVLP+ Y ++F+F++H Sbjct: 1791 SWHALPSYLAEVTAARWRQIHGAPPPPTAGSSPAEESYAVYNHPLPLTGTQELTIKLILATLAALFVLIPFCYIPASAAVFVVKERAVKAKHLQLVSGAGPAVYWLASYLWDLTLFTFTASCCMLVFFCYGEPG---YVGNSDQALATYLVLLGYGASVLPMIYCFSFLFESH 1960
BLAST of jgi.p|Trimin1|176861 vs. uniprot
Match: A0A2D5MS41_9BACT (Uncharacterized protein n=1 Tax=Verrucomicrobiales bacterium TaxID=2026801 RepID=A0A2D5MS41_9BACT) HSP 1 Score: 130 bits (327), Expect = 5.410e-32 Identity = 70/167 (41.92%), Postives = 108/167 (64.67%), Query Frame = 1 Query: 1 SYHGLPGWLGQLTELKYR---TCLNNE-QASYTARTHPLPVTAQESIETQTILSVLACLFIIIPLCYAPAAFVTFVVRERATKSKRLQLMSGASPLSYWLATYLWDVTLFMVLAAACMGCLYTYGQHAARCFVELSESAGAMALLFVLYGFSVLPLCYLYTFMFDNH 489 S H +P +L L +L Y T + E + +T +HPLP+T+++ +E +T+LS+ A LFI+IP CY PAAFV FVV+ER+TKSK LQL+SG + +YW +T+++DV L+++L M C + YG+ +A FV S + ++ +LYG S +P Y+ + F NH Sbjct: 1109 SPHAVPSFLNSLYQLIYNEECTMPSGESKPKFTVYSHPLPLTSRQVLEVKTVLSLFASLFILIPYCYIPAAFVVFVVKERSTKSKHLQLVSGVTIEAYWFSTFVFDVALYVLLTFIIMLCFFIYGRDSAAVFVGSSSTFWCTLVVTLLYGCSAIPFSYIVSRGFQNH 1275
BLAST of jgi.p|Trimin1|176861 vs. uniprot
Match: A0A2R6WXZ6_MARPO (Uncharacterized protein n=2 Tax=Marchantia polymorpha TaxID=3197 RepID=A0A2R6WXZ6_MARPO) HSP 1 Score: 127 bits (318), Expect = 8.810e-31 Identity = 68/163 (41.72%), Postives = 95/163 (58.28%), Query Frame = 1 Query: 1 SYHGLPGWLGQLTELKYRTCLNNEQASYTARTHPLPVTAQESIETQTILSVLACLFIIIPLCYAPAAFVTFVVRERATKSKRLQLMSGASPLSYWLATYLWDVTLFMVLAAACMGCLYTYGQHAARCFVELSESAGAMALLFVLYGFSVLPLCYLYTFMFDNH 489 S H +P + +L + + R LN AS PLP+T E++ Q +L+VLA LFI+IP CY A+F FVVRER K+K LQ++SGA+ SYW ATY WD+ ++ + M Y A F+ AGA+ +L + +G SVLPL Y Y+F F +H Sbjct: 1289 SEHAMPTLIQELAQARLREALNLSTASMKLSNSPLPLTKNEALRIQVMLTVLAALFILIPFCYLAASFAVFVVRERVVKAKLLQMLSGANTYSYWTATYCWDILNYIAIVGITMLVFVLYRDQA---FIGSWTKAGAVFVLLISFGLSVLPLSYCYSFAFTSH 1448
BLAST of jgi.p|Trimin1|176861 vs. uniprot
Match: A0A7I4DL55_PHYPA (ABC transporter domain-containing protein n=1 Tax=Physcomitrium patens TaxID=3218 RepID=A0A7I4DL55_PHYPA) HSP 1 Score: 124 bits (310), Expect = 1.010e-29 Identity = 69/163 (42.33%), Postives = 95/163 (58.28%), Query Frame = 1 Query: 1 SYHGLPGWLGQLTELKYRTCLNNEQASYTARTHPLPVTAQESIETQTILSVLACLFIIIPLCYAPAAFVTFVVRERATKSKRLQLMSGASPLSYWLATYLWDVTLFMVLAAACMGCLYTYGQHAARCFVELSESAGAMALLFVLYGFSVLPLCYLYTFMFDNH 489 S H LP + +L + + + L N A+ HPLP+T E +E QT+LSVLA LF++IP CY A++ FVVRER K+K LQ++SGAS ++YW ATY WD+ + A M Y + FV AGA + + +G SV+PL Y Y+F F NH Sbjct: 998 SDHSLPALVQELMQTRLKANLVNSSATMKVSNHPLPLTKTEFLEIQTVLSVLAALFVLIPFCYLGASYAVFVVRERVVKAKLLQMVSGASCVAYWTATYTWDLITYAATLALTMLIFELYQD---KSFVGSWSKAGATLSVLMSFGASVIPLTYCYSFGFLNH 1157 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|176861 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_14321 ID=mRNA_14321|Name=jgi.p|Trimin1|176861|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=495bp|location=Sequence derived from alignment at Contig_143:139746..141054+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. AGCTACCATGGACTGCCAGGGTGGCTTGGCCAGTTGACGGAGTTGAAGTAback to top protein sequence of jgi.p|Trimin1|176861 >Trimin1|176861|e_gw1.143.111.1 ID=Trimin1|176861|e_gw1.143.111.1|Name=jgi.p|Trimin1|176861|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=165bp SYHGLPGWLGQLTELKYRTCLNNEQASYTARTHPLPVTAQESIETQTILSback to top mRNA from alignment at Contig_143:139746..141054+ Legend: exonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_14321 ID=mRNA_14321|Name=jgi.p|Trimin1|176861|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1309bp|location=Sequence derived from alignment at Contig_143:139746..141054+ (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_143:139746..141054+ >mRNA_14321 ID=mRNA_14321|Name=jgi.p|Trimin1|176861|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=495bp|location=Sequence derived from alignment at Contig_143:139746..141054+ (Tribonema minus UTEX_B_3156 )back to top |