Homology
BLAST of jgi.p|Trimin1|101246 vs. uniprot
Match: A0A835YGD8_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YGD8_9STRA) HSP 1 Score: 175 bits (443), Expect = 3.300e-54 Identity = 91/91 (100.00%), Postives = 91/91 (100.00%), Query Frame = 2 Query: 137 MRRIIDQRFKFRFVVCSQHGRTVLQASTFTFYEGRRSLSDIMHYRLLLPLLLLALFFSVSLVGRISSQPALLICPAAAVATAFSIHQLCCR 409
MRRIIDQRFKFRFVVCSQHGRTVLQASTFTFYEGRRSLSDIMHYRLLLPLLLLALFFSVSLVGRISSQPALLICPAAAVATAFSIHQLCCR
Sbjct: 1 MRRIIDQRFKFRFVVCSQHGRTVLQASTFTFYEGRRSLSDIMHYRLLLPLLLLALFFSVSLVGRISSQPALLICPAAAVATAFSIHQLCCR 91
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| ProteomeId | Trimin1|101246|CE101245_30 |
| Hectar predicted targeting category | signal anchor |
| TranscriptId | 101568 |
| Track | FilteredModels1 |
| ProteinId | 101246 |
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_14226 ID=mRNA_14226|Name=jgi.p|Trimin1|101246|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=485bp|location=Sequence derived from alignment at Contig_97:381280..381764+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.
AGCTCAAGGTCACGTTGCATGGACTCGCCTGTTGATAAACTTGCCACACC
AGCATATGATTGCGGTGTTTGTGCAGACCCACTGACGCTGTGACCAGGCG
GATCAGCAGTTTTCTCCAGCGCTGAAGGCGACATGCATGCGACGCATCAT
TGATCAGAGGTTTAAATTCAGATTTGTCGTGTGTTCACAGCATGGTCGGA
CAGTTTTGCAAGCAAGCACTTTCACCTTTTACGAAGGTCGTCGCTCGCTG
TCAGATATCATGCACTATCGCCTGTTGCTGCCGCTGCTGCTGCTGGCGCT
TTTCTTCTCCGTGAGCCTTGTAGGCAGAATTTCATCTCAGCCTGCGCTCC
TGATCTGCCCCGCCGCCGCTGTGGCAACTGCATTCTCCATCCATCAGTTG
TGCTGCCGCTGATCGCTGTTGCAGCAGCTGCCAGGTGCTCCTTCTCATCC
CGTCTGCTCCCGCTGCGCCACCAGGCAGCCATTTG back to topprotein sequence of jgi.p|Trimin1|101246 >Trimin1|101246|CE101245_30 ID=Trimin1|101246|CE101245_30|Name=jgi.p|Trimin1|101246|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=92bp
MRRIIDQRFKFRFVVCSQHGRTVLQASTFTFYEGRRSLSDIMHYRLLLPL
LLLALFFSVSLVGRISSQPALLICPAAAVATAFSIHQLCCR* back to topmRNA from alignment at Contig_97:381280..381764+ Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_14226 ID=mRNA_14226|Name=jgi.p|Trimin1|101246|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=485bp|location=Sequence derived from alignment at Contig_97:381280..381764+ (Tribonema minus UTEX_B_3156 )
AGCTCAAGGTCACGTTGCATGGACTCGCCTGTTGATAAACTTGCCACACC
AGCATATGATTGCGGTGTTTGTGCAGACCCACTGACGCTGTGACCAGGCG
GATCAGCAGTTTTCTCCAGCGCTGAAGGCGACATGCATGCGACGCATCAT
TGATCAGAGGTTTAAATTCAGATTTGTCGTGTGTTCACAGCATGGTCGGA
CAGTTTTGCAAGCAAGCACTTTCACCTTTTACGAAGGTCGTCGCTCGCTG
TCAGATATCATGCACTATCGCCTGTTGCTGCCGCTGCTGCTGCTGGCGCT
TTTCTTCTCCGTGAGCCTTGTAGGCAGAATTTCATCTCAGCCTGCGCTCC
TGATCTGCCCCGCCGCCGCTGTGGCAACTGCATTCTCCATCCATCAGTTG
TGCTGCCGCTGATCGCTGTTGCAGCAGCTGCCAGGTGCTCCTTCTCATCC
CGTCTGCTCCCGCTGCGCCACCAGGCAGCCATTTG back to topCoding sequence (CDS) from alignment at Contig_97:381280..381764+ >mRNA_14226 ID=mRNA_14226|Name=jgi.p|Trimin1|101246|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=276bp|location=Sequence derived from alignment at Contig_97:381280..381764+ (Tribonema minus UTEX_B_3156 )
ATGCGACGCATCATTGATCAGAGGTTTAAATTCAGATTTGTCGTGTGTTC
ACAGCATGGTCGGACAGTTTTGCAAGCAAGCACTTTCACCTTTTACGAAG
GTCGTCGCTCGCTGTCAGATATCATGCACTATCGCCTGTTGCTGCCGCTG
CTGCTGCTGGCGCTTTTCTTCTCCGTGAGCCTTGTAGGCAGAATTTCATC
TCAGCCTGCGCTCCTGATCTGCCCCGCCGCCGCTGTGGCAACTGCATTCT
CCATCCATCAGTTGTGCTGCCGCTGA back to top
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