mRNA_14226 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|101246
Unique NamemRNA_14226
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
[Close]
BLAST of jgi.p|Trimin1|101246 vs. uniprot
Match: A0A835YGD8_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YGD8_9STRA)

HSP 1 Score: 175 bits (443), Expect = 3.300e-54
Identity = 91/91 (100.00%), Postives = 91/91 (100.00%), Query Frame = 2 
Query:  137 MRRIIDQRFKFRFVVCSQHGRTVLQASTFTFYEGRRSLSDIMHYRLLLPLLLLALFFSVSLVGRISSQPALLICPAAAVATAFSIHQLCCR 409
            MRRIIDQRFKFRFVVCSQHGRTVLQASTFTFYEGRRSLSDIMHYRLLLPLLLLALFFSVSLVGRISSQPALLICPAAAVATAFSIHQLCCR
Sbjct:    1 MRRIIDQRFKFRFVVCSQHGRTVLQASTFTFYEGRRSLSDIMHYRLLLPLLLLALFFSVSLVGRISSQPALLICPAAAVATAFSIHQLCCR 91
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|101246 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A835YGD8_9STRA3.300e-54100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_97contigContig_97:381280..381764 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|101246|CE101245_30
Hectar predicted targeting categorysignal anchor
TranscriptId101568
TrackFilteredModels1
ProteinId101246
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|101246gene_14226Tribonema minus UTEX_B_3156 geneContig_97 381280..381764 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_14226_1exon_14226_1Tribonema minus UTEX_B_3156 exonContig_97 381280..381764 +


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR5_14226UTR5_14226Tribonema minus UTEX_B_3156 five_prime_UTRContig_97 381280..381415 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_14226CDS_14226Tribonema minus UTEX_B_3156 CDSContig_97 381416..381691 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR3_14226UTR3_14226Tribonema minus UTEX_B_3156 three_prime_UTRContig_97 381692..381764 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|101246Trimin1|101246|CE101245_30Tribonema minus UTEX_B_3156 polypeptideContig_97 381416..381691 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_14226 ID=mRNA_14226|Name=jgi.p|Trimin1|101246|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=485bp|location=Sequence derived from alignment at Contig_97:381280..381764+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
AGCTCAAGGTCACGTTGCATGGACTCGCCTGTTGATAAACTTGCCACACC
AGCATATGATTGCGGTGTTTGTGCAGACCCACTGACGCTGTGACCAGGCG
GATCAGCAGTTTTCTCCAGCGCTGAAGGCGACATGCATGCGACGCATCAT
TGATCAGAGGTTTAAATTCAGATTTGTCGTGTGTTCACAGCATGGTCGGA
CAGTTTTGCAAGCAAGCACTTTCACCTTTTACGAAGGTCGTCGCTCGCTG
TCAGATATCATGCACTATCGCCTGTTGCTGCCGCTGCTGCTGCTGGCGCT
TTTCTTCTCCGTGAGCCTTGTAGGCAGAATTTCATCTCAGCCTGCGCTCC
TGATCTGCCCCGCCGCCGCTGTGGCAACTGCATTCTCCATCCATCAGTTG
TGCTGCCGCTGATCGCTGTTGCAGCAGCTGCCAGGTGCTCCTTCTCATCC
CGTCTGCTCCCGCTGCGCCACCAGGCAGCCATTTG
back to top

protein sequence of jgi.p|Trimin1|101246

>Trimin1|101246|CE101245_30 ID=Trimin1|101246|CE101245_30|Name=jgi.p|Trimin1|101246|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=92bp
MRRIIDQRFKFRFVVCSQHGRTVLQASTFTFYEGRRSLSDIMHYRLLLPL
LLLALFFSVSLVGRISSQPALLICPAAAVATAFSIHQLCCR*
back to top

mRNA from alignment at Contig_97:381280..381764+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_14226 ID=mRNA_14226|Name=jgi.p|Trimin1|101246|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=485bp|location=Sequence derived from alignment at Contig_97:381280..381764+ (Tribonema minus UTEX_B_3156 )
AGCTCAAGGTCACGTTGCATGGACTCGCCTGTTGATAAACTTGCCACACC
AGCATATGATTGCGGTGTTTGTGCAGACCCACTGACGCTGTGACCAGGCG
GATCAGCAGTTTTCTCCAGCGCTGAAGGCGACATGCATGCGACGCATCAT
TGATCAGAGGTTTAAATTCAGATTTGTCGTGTGTTCACAGCATGGTCGGA
CAGTTTTGCAAGCAAGCACTTTCACCTTTTACGAAGGTCGTCGCTCGCTG
TCAGATATCATGCACTATCGCCTGTTGCTGCCGCTGCTGCTGCTGGCGCT
TTTCTTCTCCGTGAGCCTTGTAGGCAGAATTTCATCTCAGCCTGCGCTCC
TGATCTGCCCCGCCGCCGCTGTGGCAACTGCATTCTCCATCCATCAGTTG
TGCTGCCGCTGATCGCTGTTGCAGCAGCTGCCAGGTGCTCCTTCTCATCC
CGTCTGCTCCCGCTGCGCCACCAGGCAGCCATTTG
back to top

Coding sequence (CDS) from alignment at Contig_97:381280..381764+

>mRNA_14226 ID=mRNA_14226|Name=jgi.p|Trimin1|101246|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=276bp|location=Sequence derived from alignment at Contig_97:381280..381764+ (Tribonema minus UTEX_B_3156 )
ATGCGACGCATCATTGATCAGAGGTTTAAATTCAGATTTGTCGTGTGTTC
ACAGCATGGTCGGACAGTTTTGCAAGCAAGCACTTTCACCTTTTACGAAG
GTCGTCGCTCGCTGTCAGATATCATGCACTATCGCCTGTTGCTGCCGCTG
CTGCTGCTGGCGCTTTTCTTCTCCGTGAGCCTTGTAGGCAGAATTTCATC
TCAGCCTGCGCTCCTGATCTGCCCCGCCGCCGCTGTGGCAACTGCATTCT
CCATCCATCAGTTGTGCTGCCGCTGA
back to top