mRNA_14219 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|144585
Unique NamemRNA_14219
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|144585 vs. uniprot
Match: A0A836C6Z4_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C6Z4_9STRA)

HSP 1 Score: 159 bits (403), Expect = 6.660e-50
Identity = 72/72 (100.00%), Postives = 72/72 (100.00%), Query Frame = 1 
Query:    1 AHEHVRRAPIAAGDLITNSYCNSQTGSAAPTLERWADTAFSKDFICTCPQCSGPDATRGVKCAHCADGVVMP 216
            AHEHVRRAPIAAGDLITNSYCNSQTGSAAPTLERWADTAFSKDFICTCPQCSGPDATRGVKCAHCADGVVMP
Sbjct:    1 AHEHVRRAPIAAGDLITNSYCNSQTGSAAPTLERWADTAFSKDFICTCPQCSGPDATRGVKCAHCADGVVMP 72
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BLAST of jgi.p|Trimin1|144585 vs. uniprot
Match: A0A836C7V2_9STRA (SET domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C7V2_9STRA)

HSP 1 Score: 112 bits (281), Expect = 2.950e-29
Identity = 53/64 (82.81%), Postives = 54/64 (84.38%), Query Frame = 1 
Query:   25 PIAAGDLITNSYCNSQTGSAAPTLERWADTAFSKDFICTCPQCSGPDATRGVKCAHCADGVVMP 216
            PIAAGD IT SY      SAAPTLERWA+TAFSKDFICTCPQCSGPDATR VKCAHCADGV MP
Sbjct:  183 PIAAGDAITMSYV--APASAAPTLERWANTAFSKDFICTCPQCSGPDATRAVKCAHCADGVAMP 244
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BLAST of jgi.p|Trimin1|144585 vs. uniprot
Match: A0A835ZAV2_9STRA (SET domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZAV2_9STRA)

HSP 1 Score: 101 bits (251), Expect = 2.460e-23
Identity = 45/64 (70.31%), Postives = 51/64 (79.69%), Query Frame = 1 
Query:   25 PIAAGDLITNSYCNSQTGSAAPTLERWADTAFSKDFICTCPQCSGPDATRGVKCAHCADGVVMP 216
            PI+AG+LIT +Y NS  GSA P L+RW D A SKDFIC CPQC+GPDATRG+KC  CADGV MP
Sbjct:  158 PISAGELITITYANS--GSAVPKLQRWTDLARSKDFICACPQCTGPDATRGIKCLRCADGVAMP 219
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BLAST of jgi.p|Trimin1|144585 vs. uniprot
Match: A0A835YNU4_9STRA (MYND-type domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YNU4_9STRA)

HSP 1 Score: 95.1 bits (235), Expect = 2.880e-21
Identity = 44/64 (68.75%), Postives = 50/64 (78.12%), Query Frame = 1 
Query:   25 PIAAGDLITNSYCNSQTGSAAPTLERWADTAFSKDFICTCPQCSGPDATRGVKCAHCADGVVMP 216
            PIAAGD IT  Y ++ T   APTLERWA+ A +KDFIC CPQCSGP ATRGV+CA CADGV +P
Sbjct:  144 PIAAGDPITICYSDAST---APTLERWAELAQAKDFICACPQCSGPGATRGVRCARCADGVAVP 204
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BLAST of jgi.p|Trimin1|144585 vs. uniprot
Match: A0A836CRG7_9STRA (SET domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CRG7_9STRA)

HSP 1 Score: 86.3 bits (212), Expect = 1.550e-20
Identity = 41/55 (74.55%), Postives = 44/55 (80.00%), Query Frame = 1 
Query:   28 IAAGDLITNSYCNSQTGSAAPTLERWADTAFSKDFICTCPQCSGPDATRGVKCAH 192
            IAAGDLIT SY +   G AAPTLERW + A +KDFICTCPQCS PDATRGVKCA 
Sbjct:   39 IAAGDLITISYADC--GCAAPTLERWTELARTKDFICTCPQCSAPDATRGVKCAR 91
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BLAST of jgi.p|Trimin1|144585 vs. uniprot
Match: A0A836CCS1_9STRA (MYND-type domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CCS1_9STRA)

HSP 1 Score: 90.1 bits (222), Expect = 2.030e-19
Identity = 40/64 (62.50%), Postives = 48/64 (75.00%), Query Frame = 1 
Query:   25 PIAAGDLITNSYCNSQTGSAAPTLERWADTAFSKDFICTCPQCSGPDATRGVKCAHCADGVVMP 216
            PIAAGD IT ++     G+A PTLERW+  A  +D +CTC QC+GPD TRGVKCA CA+GVVMP
Sbjct:  198 PIAAGDPITIAFGTLTPGNATPTLERWSMLASRRDVVCTCAQCTGPDVTRGVKCACCAEGVVMP 261
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BLAST of jgi.p|Trimin1|144585 vs. uniprot
Match: A0A836CDU1_9STRA (MYND-type domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CDU1_9STRA)

HSP 1 Score: 89.4 bits (220), Expect = 3.720e-19
Identity = 41/70 (58.57%), Postives = 47/70 (67.14%), Query Frame = 1 
Query:    7 EHVRRAPIAAGDLITNSYCNSQTGSAAPTLERWADTAFSKDFICTCPQCSGPDATRGVKCAHCADGVVMP 216
            E +RRAP        ++Y +   G AAPTLERW   A   DFIC C QC+GPD TRGVKCAHCA+GVVMP
Sbjct:  150 ELLRRAPDCRWRPHHHAYTHVSGGGAAPTLERWTKLAHGMDFICACAQCTGPDVTRGVKCAHCANGVVMP 219
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BLAST of jgi.p|Trimin1|144585 vs. uniprot
Match: A0A836CC33_9STRA (MYND-type domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CC33_9STRA)

HSP 1 Score: 88.6 bits (218), Expect = 7.240e-19
Identity = 40/64 (62.50%), Postives = 49/64 (76.56%), Query Frame = 1 
Query:   25 PIAAGDLITNSYCNSQTGSAAPTLERWADTAFSKDFICTCPQCSGPDATRGVKCAHCADGVVMP 216
            PIAAGDLIT +Y +S    AAPTLERW + A +KDF+C C +C+ P+ATRG+ CA CA GVVMP
Sbjct: 1314 PIAAGDLITIAYMDS---GAAPTLERWEELARTKDFVCACARCAAPNATRGIACARCAGGVVMP 1374
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BLAST of jgi.p|Trimin1|144585 vs. uniprot
Match: A0A835YVF7_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YVF7_9STRA)

HSP 1 Score: 84.3 bits (207), Expect = 3.440e-18
Identity = 41/64 (64.06%), Postives = 48/64 (75.00%), Query Frame = 1 
Query:   25 PIAAGDLITNSYCNSQTGSAAPTLERWADTAFSKDFICTCPQCSGPDATRGVKCAHCADGVVMP 216
            PIAAGDL T +Y +S   SAAPTLER    A +KDF+C C +C+ PDATRGV CA CA+GVVMP
Sbjct:  192 PIAAGDLNTVAYADS---SAAPTLERLERLARTKDFVCACARCAAPDATRGVACARCANGVVMP 252
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BLAST of jgi.p|Trimin1|144585 vs. uniprot
Match: A0A836CJK1_9STRA (MYND-type domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJK1_9STRA)

HSP 1 Score: 82.0 bits (201), Expect = 1.410e-16
Identity = 37/64 (57.81%), Postives = 44/64 (68.75%), Query Frame = 1 
Query:   25 PIAAGDLITNSYCNSQTGSAAPTLERWADTAFSKDFICTCPQCSGPDATRGVKCAHCADGVVMP 216
            PIAAGDL+T SY        A TL+RW + A SKDF+C C +C+GPDAT GV+C  CADGV  P
Sbjct:  109 PIAAGDLVTISYIACSPD--ASTLDRWTELARSKDFVCACARCAGPDATLGVRCVRCADGVAAP 170
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|144585 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 16
Match NameE-valueIdentityDescription
A0A836C6Z4_9STRA6.660e-50100.00Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
A0A836C7V2_9STRA2.950e-2982.81SET domain-containing protein (Fragment) n=1 Tax=T... [more]
A0A835ZAV2_9STRA2.460e-2370.31SET domain-containing protein n=1 Tax=Tribonema mi... [more]
A0A835YNU4_9STRA2.880e-2168.75MYND-type domain-containing protein n=1 Tax=Tribon... [more]
A0A836CRG7_9STRA1.550e-2074.55SET domain-containing protein (Fragment) n=1 Tax=T... [more]
A0A836CCS1_9STRA2.030e-1962.50MYND-type domain-containing protein n=1 Tax=Tribon... [more]
A0A836CDU1_9STRA3.720e-1958.57MYND-type domain-containing protein n=1 Tax=Tribon... [more]
A0A836CC33_9STRA7.240e-1962.50MYND-type domain-containing protein n=1 Tax=Tribon... [more]
A0A835YVF7_9STRA3.440e-1864.06Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
A0A836CJK1_9STRA1.410e-1657.81MYND-type domain-containing protein n=1 Tax=Tribon... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_97contigContig_97:345253..345468 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|144585|gw1.97.48.1
DescriptionSET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain
COG categoryH
Max annot lvl5794|Apicomplexa
EggNOG OGs2CZUN@1|root,2SBR1@2759|Eukaryota,3YBPN@5794|Apicomplexa,3YJWK@5796|Coccidia,3YU0M@5809|Sarcocystidae
Evalue2.08e-08
Seed ortholog99158.XP_008889025.1
Hectar predicted targeting categoryother localisation
TranscriptId144907
TrackFilteredModels1
ProteinId144585
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|144585gene_14219Tribonema minus UTEX_B_3156 geneContig_97 345253..345468 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_14219_1exon_14219_1Tribonema minus UTEX_B_3156 exonContig_97 345253..345468 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_14219CDS_14219Tribonema minus UTEX_B_3156 CDSContig_97 345253..345468 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|144585Trimin1|144585|gw1.97.48.1Tribonema minus UTEX_B_3156 polypeptideContig_97 345253..345468 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_14219 ID=mRNA_14219|Name=jgi.p|Trimin1|144585|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=216bp|location=Sequence derived from alignment at Contig_97:345253..345468+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
GCACATGAGCATGTTCGCCGCGCACCCATAGCCGCCGGCGACTTGATCAC
CAACTCCTACTGCAACAGCCAGACGGGCTCCGCCGCGCCGACGCTGGAGC
GCTGGGCCGACACGGCCTTCTCCAAGGACTTCATCTGCACGTGCCCGCAG
TGCTCAGGTCCAGACGCCACGCGCGGCGTAAAGTGCGCGCACTGCGCTGA
CGGCGTTGTCATGCCG
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protein sequence of jgi.p|Trimin1|144585

>Trimin1|144585|gw1.97.48.1 ID=Trimin1|144585|gw1.97.48.1|Name=jgi.p|Trimin1|144585|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=72bp
AHEHVRRAPIAAGDLITNSYCNSQTGSAAPTLERWADTAFSKDFICTCPQ
CSGPDATRGVKCAHCADGVVMP
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mRNA from alignment at Contig_97:345253..345468+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_14219 ID=mRNA_14219|Name=jgi.p|Trimin1|144585|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=216bp|location=Sequence derived from alignment at Contig_97:345253..345468+ (Tribonema minus UTEX_B_3156 )
GCACATGAGCATGTTCGCCGCGCACCCATAGCCGCCGGCGACTTGATCAC
CAACTCCTACTGCAACAGCCAGACGGGCTCCGCCGCGCCGACGCTGGAGC
GCTGGGCCGACACGGCCTTCTCCAAGGACTTCATCTGCACGTGCCCGCAG
TGCTCAGGTCCAGACGCCACGCGCGGCGTAAAGTGCGCGCACTGCGCTGA
CGGCGTTGTCATGCCG
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Coding sequence (CDS) from alignment at Contig_97:345253..345468+

>mRNA_14219 ID=mRNA_14219|Name=jgi.p|Trimin1|144585|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=216bp|location=Sequence derived from alignment at Contig_97:345253..345468+ (Tribonema minus UTEX_B_3156 )
GCACATGAGCATGTTCGCCGCGCACCCATAGCCGCCGGCGACTTGATCAC
CAACTCCTACTGCAACAGCCAGACGGGCTCCGCCGCGCCGACGCTGGAGC
GCTGGGCCGACACGGCCTTCTCCAAGGACTTCATCTGCACGTGCCCGCAG
TGCTCAGGTCCAGACGCCACGCGCGGCGTAAAGTGCGCGCACTGCGCTGA
CGGCGTTGTCATGCCG
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