mRNA_14213 (mRNA) Tribonema minus UTEX_B_3156
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of jgi.p|Trimin1|101207 vs. uniprot
Match: A0A835YPW3_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YPW3_9STRA) HSP 1 Score: 229 bits (585), Expect = 2.160e-72 Identity = 187/187 (100.00%), Postives = 187/187 (100.00%), Query Frame = 2 Query: 44 MKTSAAVAYALGTIGSASAFFMPLAPRTAPGALRMVAEEGQASAVKSNMLDALKSRLSNPAISALTVGTGSDYAIEEEAXXXXXXXXXXXXXXXXXEAPKADEEKEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAKLHIGTGGMADTRNPDPKDHEDPRKSISRAPTFEEYLKQRAAN 604
MKTSAAVAYALGTIGSASAFFMPLAPRTAPGALRMVAEEGQASAVKSNMLDALKSRLSNPAISALTVGTGSDYAIEEEAXXXXXXXXXXXXXXXXXEAPKADEEKEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAKLHIGTGGMADTRNPDPKDHEDPRKSISRAPTFEEYLKQRAAN
Sbjct: 1 MKTSAAVAYALGTIGSASAFFMPLAPRTAPGALRMVAEEGQASAVKSNMLDALKSRLSNPAISALTVGTGSDYAIEEEAXXXXXXXXXXXXXXXXXEAPKADEEKEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAKLHIGTGGMADTRNPDPKDHEDPRKSISRAPTFEEYLKQRAAN 187
BLAST of jgi.p|Trimin1|101207 vs. uniprot
Match: A0A835YLE0_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YLE0_9STRA) HSP 1 Score: 70.5 bits (171), Expect = 4.440e-12 Identity = 31/40 (77.50%), Postives = 36/40 (90.00%), Query Frame = 2 Query: 482 HIGTGGMADTRNPDPKDHEDPRKSISRAPTFEEYLKQRAA 601
H G GGMADTR+P+P DHEDPRKSIS+APTFEEY+KQ+ A
Sbjct: 35 HRGVGGMADTRDPEPVDHEDPRKSISKAPTFEEYMKQKQA 74
BLAST of jgi.p|Trimin1|101207 vs. uniprot
Match: A0A835YTB4_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YTB4_9STRA) HSP 1 Score: 70.5 bits (171), Expect = 4.440e-12 Identity = 31/40 (77.50%), Postives = 36/40 (90.00%), Query Frame = 2 Query: 482 HIGTGGMADTRNPDPKDHEDPRKSISRAPTFEEYLKQRAA 601
H G GGMADTR+P+P DHEDPRKSIS+APTFEEY+KQ+ A
Sbjct: 37 HRGVGGMADTRDPEPVDHEDPRKSISKAPTFEEYMKQKQA 76
BLAST of jgi.p|Trimin1|101207 vs. uniprot
Match: A0A7S2MQH4_9STRA (Hypothetical protein (Fragment) n=3 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2MQH4_9STRA) HSP 1 Score: 70.5 bits (171), Expect = 1.120e-11 Identity = 32/40 (80.00%), Postives = 36/40 (90.00%), Query Frame = 2 Query: 479 LHIGTGGMADTRNPDPKDHEDPRKSISRAPTFEEYLKQRA 598
LHIG+GGMADTR+PD +HEDPRKSIS AP+FEEYLK RA
Sbjct: 32 LHIGSGGMADTRDPDAMEHEDPRKSISAAPSFEEYLKSRA 71
BLAST of jgi.p|Trimin1|101207 vs. uniprot
Match: A0A1E7F0Y3_9STRA (Uncharacterized protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7F0Y3_9STRA) HSP 1 Score: 68.2 bits (165), Expect = 3.160e-11 Identity = 33/42 (78.57%), Postives = 35/42 (83.33%), Query Frame = 2 Query: 485 IGTGGMADTRNPDPKDHEDPRKSISRAPTFEEYLKQRAAN*G 610
IG GGMADTRNPD D+EDPRKSIS AP+FEEYLKQR A G
Sbjct: 37 IGAGGMADTRNPDAADNEDPRKSISEAPSFEEYLKQRDAEAG 78
BLAST of jgi.p|Trimin1|101207 vs. uniprot
Match: A0A7S1Z902_9STRA (Hypothetical protein (Fragment) n=3 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S1Z902_9STRA) HSP 1 Score: 68.2 bits (165), Expect = 5.430e-11 Identity = 31/38 (81.58%), Postives = 34/38 (89.47%), Query Frame = 2 Query: 482 HIGTGGMADTRNPDPKDHEDPRKSISRAPTFEEYLKQR 595
HIG+GGMADTRNPD +HEDPRKSIS AP+FEEYLK R
Sbjct: 34 HIGSGGMADTRNPDALNHEDPRKSISAAPSFEEYLKSR 71
BLAST of jgi.p|Trimin1|101207 vs. uniprot
Match: A0A7S3Y309_HETAK (Hypothetical protein n=4 Tax=Eukaryota TaxID=2759 RepID=A0A7S3Y309_HETAK) HSP 1 Score: 70.9 bits (172), Expect = 1.110e-10 Identity = 33/39 (84.62%), Postives = 35/39 (89.74%), Query Frame = 2 Query: 482 HIGTGGMADTRNPDPKDHEDPRKSISRAPTFEEYLKQRA 598
HIG+GGMADTRNPD HEDPRKSIS AP+FEEYLKQRA
Sbjct: 31 HIGSGGMADTRNPDTIQHEDPRKSISAAPSFEEYLKQRA 69
BLAST of jgi.p|Trimin1|101207 vs. uniprot
Match: A0A7S2L5C2_9STRA (Pyruvate kinase (Fragment) n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2L5C2_9STRA) HSP 1 Score: 70.9 bits (172), Expect = 2.180e-10 Identity = 33/39 (84.62%), Postives = 35/39 (89.74%), Query Frame = 2 Query: 482 HIGTGGMADTRNPDPKDHEDPRKSISRAPTFEEYLKQRA 598
HIG+GGMADTRNPD HEDPRKSIS AP+FEEYLKQRA
Sbjct: 38 HIGSGGMADTRNPDTIQHEDPRKSISAAPSFEEYLKQRA 76
BLAST of jgi.p|Trimin1|101207 vs. uniprot
Match: B8LEA0_THAPS (Predicted protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8LEA0_THAPS) HSP 1 Score: 68.9 bits (167), Expect = 5.920e-10 Identity = 33/43 (76.74%), Postives = 37/43 (86.05%), Query Frame = 2 Query: 482 HIGTGGMADTRNPDPKDHEDPRKSISRAPTFEEYLKQRAAN*G 610
HIG+GGMADTRNP+ +EDPRKSIS AP+FEEYLKQRAA G
Sbjct: 30 HIGSGGMADTRNPEASVNEDPRKSISAAPSFEEYLKQRAAQDG 72
BLAST of jgi.p|Trimin1|101207 vs. uniprot
Match: A0A7S2BTZ6_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2BTZ6_9STRA) HSP 1 Score: 65.5 bits (158), Expect = 8.020e-10 Identity = 29/40 (72.50%), Postives = 34/40 (85.00%), Query Frame = 2 Query: 482 HIGTGGMADTRNPDPKDHEDPRKSISRAPTFEEYLKQRAA 601
H+G GGM DTR+P+ HEDPRKSIS AP+FEEY+KQRAA
Sbjct: 76 HVGKGGMVDTRDPEVMTHEDPRKSISAAPSFEEYMKQRAA 115 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|101207 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_14213 ID=mRNA_14213|Name=jgi.p|Trimin1|101207|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=876bp|location=Sequence derived from alignment at Contig_97:272576..275996- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. AACGAGGGCAGCTGCACAGGAGTTTTCTGGGGAGCAAAGGAGCATGAAGAback to top protein sequence of jgi.p|Trimin1|101207 >Trimin1|101207|CE101206_433 ID=Trimin1|101207|CE101206_433|Name=jgi.p|Trimin1|101207|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=188bp MKTSAAVAYALGTIGSASAFFMPLAPRTAPGALRMVAEEGQASAVKSNMLback to top mRNA from alignment at Contig_97:272576..275996- Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_14213 ID=mRNA_14213|Name=jgi.p|Trimin1|101207|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=3421bp|location=Sequence derived from alignment at Contig_97:272576..275996- (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_97:272576..275996- >mRNA_14213 ID=mRNA_14213|Name=jgi.p|Trimin1|101207|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=564bp|location=Sequence derived from alignment at Contig_97:272576..275996- (Tribonema minus UTEX_B_3156 )back to top |