mRNA_1420 (mRNA) Tribonema minus UTEX_B_3156
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Overview
Homology
BLAST of jgi.p|Trimin1|153606 vs. uniprot
Match: A0A835ZED3_9STRA (SET domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZED3_9STRA) HSP 1 Score: 276 bits (707), Expect = 2.390e-94 Identity = 133/133 (100.00%), Postives = 133/133 (100.00%), Query Frame = 1
Query: 1 ETNLKVAPSTIPGAGLGLFSVKTIEVTRAQRAAGVRIIKYTGEQLTNEQVNARYGVGPRPYVLGLRRPAGMNVDARSTQSSVARYCNAGDRPGHGLTCNARFTETGWLVATRTIPAGAEIITKYGGGYWRSFN 399
ETNLKVAPSTIPGAGLGLFSVKTIEVTRAQRAAGVRIIKYTGEQLTNEQVNARYGVGPRPYVLGLRRPAGMNVDARSTQSSVARYCNAGDRPGHGLTCNARFTETGWLVATRTIPAGAEIITKYGGGYWRSFN
Sbjct: 1 ETNLKVAPSTIPGAGLGLFSVKTIEVTRAQRAAGVRIIKYTGEQLTNEQVNARYGVGPRPYVLGLRRPAGMNVDARSTQSSVARYCNAGDRPGHGLTCNARFTETGWLVATRTIPAGAEIITKYGGGYWRSFN 133
BLAST of jgi.p|Trimin1|153606 vs. uniprot
Match: A0A351ZVZ4_9BACT (SET domain-containing protein-lysine N-methyltransferase n=1 Tax=Bacteroidetes bacterium TaxID=1898104 RepID=A0A351ZVZ4_9BACT) HSP 1 Score: 77.0 bits (188), Expect = 3.900e-15 Identity = 51/125 (40.80%), Postives = 67/125 (53.60%), Query Frame = 1
Query: 10 LKVAPSTIPGAGLGLFSVKTIEVTRAQRAAGVRIIKYTGEQLTNEQVNARYGVGPRPYVLGLRRPAGMNVDARSTQSSVARYCNAGDRPGHGLTCNARFTETG---WLVATRTIPAGAEIITKYG 375
+ V S+IP AGLGL++ ++ EV RI++YTGE+LT +Q RY + GL +DAR T + VARY A D G G NA + G W+VATR I G EI+T YG
Sbjct: 42 VSVRKSSIPKAGLGLYAERSFEVDD-------RIVEYTGEKLTTDQYERRYK-SDQLGSYGLALSEKYVIDARRTDAGVARY--ACDYHGSGRKPNAEYVNFGGRVWIVATRRIKQGEEILTDYG 156
BLAST of jgi.p|Trimin1|153606 vs. uniprot
Match: A0A3D3JGT2_9BACT (SET domain-containing protein-lysine N-methyltransferase n=1 Tax=Bacteroidetes bacterium TaxID=1898104 RepID=A0A3D3JGT2_9BACT) HSP 1 Score: 69.3 bits (168), Expect = 3.690e-12 Identity = 49/125 (39.20%), Postives = 66/125 (52.80%), Query Frame = 1
Query: 10 LKVAPSTIPGAGLGLFSVKTIEVTRAQRAAGVRIIKYTGEQLTNEQVNARYGVGPRPYVLGLRRPAGMNVDARSTQSSVARYCNAGDRPGHGLTCNARFTETGW---LVATRTIPAGAEIITKYG 375
L+VA STIP AG+GLF+ + + I +Y GE+LT +Q + RYG G++ + +DAR T + VARY A D G G NA + G +VA R I AG EI+T YG
Sbjct: 42 LRVAKSTIPLAGMGLFATRGFKKDEV-------ICEYGGEKLTVDQYDRRYGDDAMGS-YGIQLDSKHVIDARKTSAGVARY--ACDYHGSGRRPNAEYVTDGGKIHIVAMRRIAAGEEILTDYG 156
BLAST of jgi.p|Trimin1|153606 vs. uniprot
Match: A0A7C1JRQ2_9BACT (SET domain-containing protein n=1 Tax=Chlorobi bacterium TaxID=2268192 RepID=A0A7C1JRQ2_9BACT) HSP 1 Score: 69.3 bits (168), Expect = 4.750e-12 Identity = 47/127 (37.01%), Postives = 67/127 (52.76%), Query Frame = 1
Query: 10 LKVAPSTIPGAGLGLFSVKTIEVTRAQRAAGVRIIKYTGEQLTNEQVNARYG-VGPRPYVLGLRRPAGMNVDARSTQSSVAR----YCNAGDRPGHGLTCNARFTETGWLVATRTIPAGAEIITKYG 375
++V PSTIPGAGLGLF+V+ + GV + Y G++L+ NARY +G PY + L A + +DAR T + VAR Y +G RP + + E W +A I G E++ YG
Sbjct: 55 VEVRPSTIPGAGLGLFAVRYLP-------KGVFLFNYDGDRLSVADYNARYADMGFGPYAIELT--ASVIIDARRTDAGVARFICSYHGSGKRPNVEYVSSGKCVEV-WTIAP--IETGEELLADYG 169
BLAST of jgi.p|Trimin1|153606 vs. uniprot
Match: A0A1M3QX06_9SPHI (SET domain-containing protein-lysine N-methyltransferase n=2 Tax=Bacteroidetes TaxID=976 RepID=A0A1M3QX06_9SPHI) HSP 1 Score: 67.0 bits (162), Expect = 1.800e-11 Identity = 50/136 (36.76%), Postives = 68/136 (50.00%), Query Frame = 1
Query: 1 ETNLKVAPSTIPGAGLGLFSVKTIEVTRAQRAAGVRIIKYTGEQLTNEQVNARYGVGPRPYVLGLRRPAGMNVDARSTQSSVARYCNAGDRPG----HGLTCNARFTETG---WLVATRTIPAGAEIITKYGGGYW 387
E L V ST+P AG GLF+ KTI G RI++Y G T ++V+ + G Y+ + R +N AR +ARY N D G G+T NA + G ++ +T+ IPAGAEI YG YW
Sbjct: 5 EKQLVVKKSTLPNAGKGLFTRKTIP-------KGTRIVEYKGTITTWKEVD--HNEGSNGYIYYINRNTVIN--ARPHPDYLARYAN--DAKGIAKLKGVTNNAVYATEGLKAYIESTKEIPAGAEIFVGYGKEYW 127
BLAST of jgi.p|Trimin1|153606 vs. uniprot
Match: UPI0019848C60 (SET domain-containing protein n=1 Tax=Cytophagaceae bacterium TaxID=2026729 RepID=UPI0019848C60) HSP 1 Score: 67.0 bits (162), Expect = 4.550e-11 Identity = 48/132 (36.36%), Postives = 67/132 (50.76%), Query Frame = 1
Query: 1 ETNLKVAPSTIPGAGLGLFSVKTIEVTRAQRAAGVRIIKYTGEQLTNEQVNARY---GVGPRPYVLGLRRPAGMNVDARSTQSSVARY-CNAGDRPGHGLTCNARFTETGW---LVATRTIPAGAEIITKYG 375
E VA ST+P AGLGLF T + G +++Y+GE +T +Q N RY G G LG RR +DAR T S + RY C+A G L N ++ + ++A R I +G+EI+ YG
Sbjct: 42 ELGFWVAQSTVPNAGLGLF-------TDRKYKRGDTVLEYSGEVITTKQYNERYVDFGYGEYGMTLGTRRV----IDARKTSSGLGRYVCDA---YGSELKKNVQYEDYKGKINIIALRKIKSGSEILVSYG 159
BLAST of jgi.p|Trimin1|153606 vs. uniprot
Match: A0A537IFC2_9BACT (SET domain-containing protein n=1 Tax=Bacteroidetes bacterium TaxID=1898104 RepID=A0A537IFC2_9BACT) HSP 1 Score: 65.5 bits (158), Expect = 7.370e-11 Identity = 46/134 (34.33%), Postives = 74/134 (55.22%), Query Frame = 1
Query: 7 NLKVAPSTIPGAGLGLFSVKTIEVTRAQRAAGVRIIKYTGEQLTNEQVNARYGVGPRPYVLGLRRPAGMNVDARSTQSSVARYCN--AGDRPGHGLTCNARFTETG---WLVATRTIPAGAEIITKYGGGYWRS 393
+LKV ST+P AG GLF+ K+++ G RI +Y G T ++ A+ G Y+ + R +DA+ +++ ARY N +G + GLT N+ + E G ++ A + IPAG+EI+ YG YW++
Sbjct: 5 HLKVKKSTLPKAGKGLFTTKSLK-------KGTRIAEYRGRITTWKK--AKEEEGDNAYIFYVNR--NHVIDAKPSRAK-ARYANDASGLQRIKGLTNNSEYVEDGVKVYIEAKKDIPAGSEILVGYGREYWKT 126
BLAST of jgi.p|Trimin1|153606 vs. uniprot
Match: UPI000370E371 (SET domain-containing protein n=1 Tax=Cytophaga aurantiaca TaxID=29530 RepID=UPI000370E371) HSP 1 Score: 66.2 bits (160), Expect = 9.200e-11 Identity = 46/131 (35.11%), Postives = 65/131 (49.62%), Query Frame = 1
Query: 1 ETNLKVAPSTIPGAGLGLFSVKTIEVTRAQRAAGVRIIKYTGEQLTNEQVNARY---GVGPRPYVLGLRRPAGMNVDARSTQSSVARYCNAGDRPGHGLTCNARFTETGWLV---ATRTIPAGAEIITKYG 375
E + KVA ST+P AGLGLF++K I+ G + Y GE+LT +Q N RY G G LG + +DAR T S + R+ D G G N + + ++ A + I AG E++ YG
Sbjct: 42 ELSFKVAQSTVPFAGLGLFTLKKIK-------KGAVALLYEGEKLTVDQYNKRYDKSGHGEYGMTLGKKHV----IDARETSSGLGRFVC--DYTGSGKKANVEYLDNEGVIEITAKKKIKAGEELLVDYG 159
BLAST of jgi.p|Trimin1|153606 vs. uniprot
Match: C1FIJ2_MICCC (SET domain-containing protein n=1 Tax=Micromonas commoda (strain RCC299 / NOUM17 / CCMP2709) TaxID=296587 RepID=C1FIJ2_MICCC) HSP 1 Score: 65.5 bits (158), Expect = 9.420e-11 Identity = 49/134 (36.57%), Postives = 67/134 (50.00%), Query Frame = 1
Query: 10 LKVAPSTIPGAGLGLFSVKTIEVTRAQRAAGVRII--KYTGEQLTNEQVNARYGVGPRPYVLGLRRPAGMNVDARSTQSSVARYCNAGDRPGHGLTCNARFTE-----TGWLVATRTIPAGAEIITKYGGGYWR 390
L+V PS IPGAGLGLF+ K + AG + Y G+ LT Q A + YV+ L ++VDA + +ARY N G G N RF + + ++ATR + AG E+ +YG GYWR
Sbjct: 24 LRVQPSLIPGAGLGLFTAKDV-------LAGTVLTGCSYGGDVLTFTQARA-LPPDAKDYVMALH--FNVHVDAANHPGYLARYINDNLTDG-GRHRNVRFVKDPARRSATVMATRDLRAGEELYAEYGDGYWR 146
BLAST of jgi.p|Trimin1|153606 vs. uniprot
Match: A0A1Q3TPU7_9SPHI (SET domain-containing protein n=2 Tax=Bacteroidetes TaxID=976 RepID=A0A1Q3TPU7_9SPHI) HSP 1 Score: 61.6 bits (148), Expect = 1.880e-9 Identity = 47/136 (34.56%), Postives = 70/136 (51.47%), Query Frame = 1
Query: 1 ETNLKVAPSTIPGAGLGLFSVKTIEVTRAQRAAGVRIIKYTGEQLTNEQVNARYGVGPRPYVLGLRRPAGMNVDARSTQSSVARYCN--AGDRPGHGLTCNARFTETG---WLVATRTIPAGAEIITKYGGGYWRS 393
+ L + PST+PGAG+GLF+ TI++ R G II+Y G T + + ++ + PY+ + R +N +ARY N AG G+ N+ F G ++ ATR IPAG+EI YG YW +
Sbjct: 5 DEQLFIQPSTLPGAGMGLFT--TIDIPR-----GTLIIEYLGTVTTWKDI--KHDID-NPYLCYVNRHHVIN--GAPHPEYLARYANDAAGPVRLEGVRNNSFFEIDGTRVFIKATRRIPAGSEIFVNYGKDYWET 128 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|153606 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_1420 ID=mRNA_1420|Name=jgi.p|Trimin1|153606|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=399bp|location=Sequence derived from alignment at Contig_18:1004307..1004705- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. GAAACAAATTTGAAGGTCGCGCCTTCCACAATACCCGGTGCCGGACTTGGback to top protein sequence of jgi.p|Trimin1|153606 >Trimin1|153606|gw1.18.318.1 ID=Trimin1|153606|gw1.18.318.1|Name=jgi.p|Trimin1|153606|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=133bp ETNLKVAPSTIPGAGLGLFSVKTIEVTRAQRAAGVRIIKYTGEQLTNEQVback to top mRNA from alignment at Contig_18:1004307..1004705- Legend: exonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_1420 ID=mRNA_1420|Name=jgi.p|Trimin1|153606|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=399bp|location=Sequence derived from alignment at Contig_18:1004307..1004705- (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_18:1004307..1004705- >mRNA_1420 ID=mRNA_1420|Name=jgi.p|Trimin1|153606|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=399bp|location=Sequence derived from alignment at Contig_18:1004307..1004705- (Tribonema minus UTEX_B_3156 )back to top |