Homology
BLAST of jgi.p|Trimin1|339562 vs. uniprot
Match: A0A836C7L2_9STRA (UBX domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C7L2_9STRA) HSP 1 Score: 717 bits (1850), Expect = 2.160e-258 Identity = 438/438 (100.00%), Postives = 438/438 (100.00%), Query Frame = 1 Query: 1 MGAADVDAALEGGVDWRLRQQLLLGSLATVAAAFLLQSLAAHAARWVTRRRREAKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSAVAVFEAFSLSALQERHTALSSSSHLKEGAAVSAAETDVAXXXXXXXXXXXXXXXXAPSRPGDIFAVHERQCADARQRMAEMGSGTPTEHDDHQRVNGQQRSQQGSRVDAAGATSPAVPDGPANLKLNSPPDSPAVKTWSLDGDIAAALQYGAGLGGVLSTDAGDGDAQQTAAAARRELLLQQDLAYAVSLEADRQRDRDTAATLSSPAGATERCNEDAERCHSAPSNGQLHSPAASISALPAPTLSEELPHEPPANFDNTHGGAAAGTGEGEGVVRVCFKCGGARIVRRFAASSRVSDLYAYVRRARLAQGRWELRRSYPQEALSDDSMSQQTIEDFGLADAVLIVQPLE 1314
MGAADVDAALEGGVDWRLRQQLLLGSLATVAAAFLLQSLAAHAARWVTRRRREAKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSAVAVFEAFSLSALQERHTALSSSSHLKEGAAVSAAETDVAXXXXXXXXXXXXXXXXAPSRPGDIFAVHERQCADARQRMAEMGSGTPTEHDDHQRVNGQQRSQQGSRVDAAGATSPAVPDGPANLKLNSPPDSPAVKTWSLDGDIAAALQYGAGLGGVLSTDAGDGDAQQTAAAARRELLLQQDLAYAVSLEADRQRDRDTAATLSSPAGATERCNEDAERCHSAPSNGQLHSPAASISALPAPTLSEELPHEPPANFDNTHGGAAAGTGEGEGVVRVCFKCGGARIVRRFAASSRVSDLYAYVRRARLAQGRWELRRSYPQEALSDDSMSQQTIEDFGLADAVLIVQPLE
Sbjct: 1 MGAADVDAALEGGVDWRLRQQLLLGSLATVAAAFLLQSLAAHAARWVTRRRREAKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSAVAVFEAFSLSALQERHTALSSSSHLKEGAAVSAAETDVAXXXXXXXXXXXXXXXXAPSRPGDIFAVHERQCADARQRMAEMGSGTPTEHDDHQRVNGQQRSQQGSRVDAAGATSPAVPDGPANLKLNSPPDSPAVKTWSLDGDIAAALQYGAGLGGVLSTDAGDGDAQQTAAAARRELLLQQDLAYAVSLEADRQRDRDTAATLSSPAGATERCNEDAERCHSAPSNGQLHSPAASISALPAPTLSEELPHEPPANFDNTHGGAAAGTGEGEGVVRVCFKCGGARIVRRFAASSRVSDLYAYVRRARLAQGRWELRRSYPQEALSDDSMSQQTIEDFGLADAVLIVQPLE 438
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| ProteomeId | Trimin1|339562|MIX48325_2_12 |
| Hectar predicted targeting category | chloroplast |
| TranscriptId | 339884 |
| Track | FilteredModels1 |
| ProteinId | 339562 |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_14206 ID=mRNA_14206|Name=jgi.p|Trimin1|339562|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1317bp|location=Sequence derived from alignment at Contig_97:196377..200942- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.
ATGGGCGCTGCAGATGTGGATGCGGCACTCGAAGGCGGAGTGGACTGGAG
GCTCAGGCAACAGCTGCTGCTGGGCTCCCTGGCGACTGTTGCGGCGGCGT
TCCTGCTGCAGAGCCTGGCGGCGCACGCGGCGCGCTGGGTGACGCGTCGC
CGCCGCGAGGCCAAGCAGGCGGCGCAGGTGCTGCAGGACCTGCGCGCCAG
GCAGCGCGCACCGCCGCCGCCGCCGCCGCTGCCGCCGCATCCGCGCAATT
CCGCGCCTTCTGCTGTGGCCGTGTTTGAGGCATTCTCGTTGAGCGCCCTG
CAAGAAAGGCACACGGCGCTCAGCAGCTCCTCACACTTGAAGGAAGGCGC
GGCAGTGTCGGCAGCAGAAACTGACGTGGCAGCGGCAGCGGCGGCAGCGG
CAACGGCAGCGGCGGCTGGCGCAGCGGCGGCGCCGTCACGGCCAGGCGAC
ATATTTGCCGTCCATGAGCGGCAGTGCGCCGATGCGCGGCAGCGCATGGC
AGAGATGGGCAGTGGTACGCCCACTGAGCATGATGATCACCAGCGCGTCA
ACGGGCAGCAGCGCTCACAACAGGGGTCTCGGGTTGACGCAGCTGGCGCT
ACGAGCCCTGCTGTGCCAGACGGGCCTGCGAACCTCAAGTTGAACTCTCC
TCCAGATTCACCCGCGGTGAAAACGTGGTCTCTGGATGGGGATATTGCCG
CTGCCCTGCAGTACGGAGCGGGGCTGGGGGGTGTTTTGAGCACTGACGCA
GGCGATGGCGATGCTCAGCAGACCGCTGCGGCGGCGCGGAGGGAGCTGCT
GCTGCAGCAGGACCTCGCATACGCTGTGTCTCTGGAGGCAGACAGACAGA
GAGACCGCGACACTGCAGCAACGCTCAGCTCGCCTGCTGGCGCGACGGAG
CGCTGCAATGAAGACGCTGAGCGCTGCCACAGCGCGCCGTCCAATGGACA
GTTACACAGTCCCGCTGCTTCAATAAGCGCCCTCCCTGCGCCGACGCTTT
CAGAGGAGCTGCCGCATGAGCCGCCGGCTAACTTCGACAACACGCACGGC
GGCGCCGCGGCGGGTACAGGCGAAGGGGAAGGGGTTGTTAGGGTCTGCTT
CAAGTGCGGGGGGGCGCGCATCGTGCGCCGCTTTGCCGCCAGCTCTCGCG
TCAGCGACCTGTACGCGTACGTGAGGCGCGCGCGTTTGGCGCAGGGCAGG
TGGGAGCTTCGCCGCTCGTATCCGCAGGAGGCGCTGTCAGATGACTCTAT
GTCGCAGCAGACAATTGAAGACTTCGGCTTGGCAGATGCGGTGCTGATAG
TGCAGCCATTAGAATGA back to topprotein sequence of jgi.p|Trimin1|339562 >Trimin1|339562|MIX48325_2_12 ID=Trimin1|339562|MIX48325_2_12|Name=jgi.p|Trimin1|339562|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=439bp
MGAADVDAALEGGVDWRLRQQLLLGSLATVAAAFLLQSLAAHAARWVTRR
RREAKQAAQVLQDLRARQRAPPPPPPLPPHPRNSAPSAVAVFEAFSLSAL
QERHTALSSSSHLKEGAAVSAAETDVAAAAAAAATAAAAGAAAAPSRPGD
IFAVHERQCADARQRMAEMGSGTPTEHDDHQRVNGQQRSQQGSRVDAAGA
TSPAVPDGPANLKLNSPPDSPAVKTWSLDGDIAAALQYGAGLGGVLSTDA
GDGDAQQTAAAARRELLLQQDLAYAVSLEADRQRDRDTAATLSSPAGATE
RCNEDAERCHSAPSNGQLHSPAASISALPAPTLSEELPHEPPANFDNTHG
GAAAGTGEGEGVVRVCFKCGGARIVRRFAASSRVSDLYAYVRRARLAQGR
WELRRSYPQEALSDDSMSQQTIEDFGLADAVLIVQPLE* back to topmRNA from alignment at Contig_97:196377..200942- Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_14206 ID=mRNA_14206|Name=jgi.p|Trimin1|339562|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=4566bp|location=Sequence derived from alignment at Contig_97:196377..200942- (Tribonema minus UTEX_B_3156 )
ATGGGCGCTGCAGATGTGGATGCGGCACTCGAAGGCGGAGTGGACTGGAG
GCTCAGGCAACAGCTGCTGCTGGGCTCCCTGGCGACTGTTGCGGCGGCGT
TGTGAGTGCCACCGTGCAAGTCTTGCACACCTGCTGTGATGCCCAGCGCA
CCGCATGCCCATCACCTAGCTACTGCAGGCCGCCAAGCTGTTGCGCTGCG
AGCAGAGGCCCTTGGTGTGCCCTGGTGTCGCATAATCTCGACAAGGAAGT
TATCGGTGTAACGCAAAGTTGTGACACTGACGCAACTTGTAGCGTGATGC
CAATCGTGGTGTGCATTATTGCCAGACAGCTGACCGTTCAGCAATTGTAC
TGCACCTGAAGATCCTCCTTTGGATGTCAATGGATGCACATGGCATGGTT
GCAGCATCTCTTCTTGCAGAGGCAAGGGCTATCTCTGCTGATTCGGCAAG
CAAAGCCGACATGAACCAACGGTCCAACAACCTCAATGGAACTGCAACGC
AAAGCTCAGACACCTCCTCTCTTGATTGCGACCACCTGTGAGCATAACGA
ACGTCGTGTCATTTTGACTAGCATTCAGCCCCATGGCACGCGCCGCATTG
CGTTCTCCGTGCATGCACTTCGCCGCCGCGGTGCTTCCGTTCCTAGGCAC
CTGCGTACTCTGCCATGCGCCTTTCCGCTGTACTCAACCGCCGTCCCCTC
CTGCCGAACGTTGACGCGGCGCCGCTGGGCCGTCCTGCAGGCGACGCGTT
GCTACCAACGCGCCGCGCCATCATCTAACGCTGATTGCTGCTGCCTCCGC
ACCTTGGCACTATGCAGCCTGCTGCAGAGCCTGGCGGCGCACGCGGCGCG
CTGGGTGACGCGTCGCCGCCGCGAGGCCAAGCAGGCGGCGCAGGTGCTGC
AGGACCTGCGCGCCAGGCAGCGCGCACCGCCGCCGCCGCCGCCGCTGCCG
CCGCATCCGCGCAATTCCGCGCCTTCTGCTGTGGCCGTGTTTGAGGCATT
CTCGTTGAGCGCCCTGCAAGAAAGGCACACGGCGCTCAGCAGCTCCTCAC
ACTTGAAGGAAGGCGCGGCAGTGTCGGCAGCAGAAACTGACGTGGCAGCG
GCAGCGGCGGCAGCGGCAACGGCAGCGGCGGCTGGCGCAGCGGCGGCGCC
GTCACGGCCAGGCGACATATTTGCCGTCCATGAGCGGCAGTGCGCCGATG
CGCGGCAGCGCATGGCAGAGATGGGCAGTGGTACGCCCACTGAGCATGAT
GATCACCAGCGCGTCAACGGGCAGCAGCGCTCACAACAGGGGTCTCGGGT
TGACGCAGCTGGCGCTACGAGCCCTGCTGTGCCAGACGGGCCTGCGAACC
TCAAGTTGAACTCTCCTCCAGATTCACCCGCGGTGAAAACGTGGTCTCTG
GATGGGGATATTGCCGCTGCCCTGCAGTACGGAGCGGGGCTGGGGGGTGT
TTTGAGCACTGACGCAGGCGATGGCGATGCTCAGCAGACCGCTGCGGCGG
CGCGGAGGGAGCTGCTGCTGCAGCAGGACCTCGCATACGCTGTGTCTCTG
GAGGCAGACAGGTGAGGCGACCTGCAGTCCGAAGATTGTGTGTGCAAAGC
ATAAGTTAAGAAGTGCATGATTCCTCAATAGGTCCAGCGCACTCGATTAA
GGGATTCGCTCCCAGTTGTCATTTAACTTTGCTACTGCATATCCGGAAGC
ACACTCATTGGGGCCATGATTGCGCCCCACGCTCCACACCACGTTTTGGC
ATGAGCTCGAACCTGCTTGCACCGCACATGCATACCCGCCGCATACATAT
CACAGCAGAAGCACAGACGCGGCAATGCTCAGCCTTCCAGGTGGTGCAGG
CGAATGGCACCAAGCAGAAAGCCATCGGAGAGCCTCAGCCACTCTTGGCT
GCCTGGTGCCCAGATTGTGCGATGCATTCGGCCCGTGCCATCACAATTAC
GCCGCCGTCCTCCTTCTCATTCAACCGCAGACAGAGAGACCGCGACACTG
CAGCAACGCTCAGCTCGCCTGATGGCGCGAGGGATAGGGTTAGGTTAACC
CTGATGACTGCGCTCTTGCTCTCTTTCCCCTCGGCCCGCAGACAGAGAGA
CCGCGACACTGCAGCAACGCTCAGCTCGCCTGCTGGCGCGACGGAGCGCT
GCAATGAAGACGCTGAGCGCTGCCACAGCGCGCCGTCCAATGGACAGTTA
CACAGTCCCGCTGCTTCAATAAGCGCCCTCCCTGCGCCGACGCTTTCAGA
GGAGCTGCCGCATGAGCCGCCGGTGAGGGTCTTGAGAGCAGATTTGAAGC
GCGAAGCTGTCTAATTGTATACATCAATGAGATAATGGCGGGCCCCGTAG
CGACGGCGCCAAGTGCTGATTGACAACAGCGCCAGTGGGCTTTGTCTGAC
CGCGGAGCATCAGAAGGCTTGGCAGGTTTGGCTACCGGTGAGTACCCATG
GAAAGGCAGACGGAAACAAGACACGAATGTTGCACTCCCAGATAGTATTA
GTAGCAGCGACCAACTGGGGTCGTGTCAGACGACCCTCTGGTTTGAGCAC
AGACAATGTGATATGCAGCTGCCAGCCAGTGTGATGTGTAAGCGCTTCCG
GCCCTTCACACGGGCTCGGCATTTGGGATCGCGCGCCCACGGCACGTCTT
GCCGAGGCTAACTTCGACAACACGCACGGCGGCGCCGCGGCGGGTACAGG
CGTGCGCTGCTGAAGTGGCTCTGGCCATCATCGCCGCTTGCAGGCGAAGT
TGCAGTTGAGCATGGTGTGTGGCGCTGCGGGGGCCCTGACGCGCACGAAG
ATCCAGCAACTGAGCAGCACGTGGTGCCTCTGATGTACCGCACTTACAGC
TTGGCGGTGCCGCGCATCCCTATGCAACAGGGTGCGCCGCTTGTTGCCTG
CCGCCGCCTCCTCGCCCCCTGGCAGCGCGCAGTGAGCCCAACCCATAGTA
GCTGTGTGTAACCCAGATCGCAGGATAGATTGCCCCTGTCTCACATCTAT
CTACTACTGGCCGTGCGCATCGAGCCAACCCAGGTAGCTGTGTGTAACCA
GATCAACTGCCAGAGGCGACCCAAGTCTCTCATTTACCTCTCCACACAGA
GCACTGCCCGCAGCCAGCAAAGCGAGGGCACATCGCGGCACTGATGTCAA
CACCTCGAGCTGCCCTGGCGCACAACAACCCCCTGCAAGGTGTCACTTGC
GCTACTCTAACCCTAACCCTAATTCCTGCCCTGGCATATGACAACTTCAA
GCACATGTCCCTTGCGCTACTTTACCGAGCCTCTGCAGGCGGTTTCAACC
AGCTGCAGGGCAAGGCGCCAACCAGTGTTCATATATCTACTGCAGCGGAT
TCAGAAGTGAACTTGTGTGTATGCACACTGGCGCGGCACGGCAGGGCCTT
GCGATCCGCCTCTCGGCCCTCACCAGCGCCACCGCAGGACTGACGCGCCA
CTTCACGCAAAACCTCTACTGTGCCACTTTTGTTCGCTCCTGTTGACCAC
TTGTGGCGTGCATGTCATGACAGCAAGAATTGCGTTGTTGCACGCCGCCG
TCGCTCCACCCCAGGAAGGGGAAGGGGTTGTTAGGGTCTGCTTCAAGTGC
GGGGGGGCGCGCATCGTGCGCCGCTTTGCCGCCAGCTCTCGCGTCAGCGA
CCTGTACGCGTACGTGAGGCGCGCGCGTTTGGCGCAGGGCAGGTGAGCGT
TGAGGCACACATGGCGCTGTCAGGTATTTGCTTCTTGGTACCACGTCACG
CGTCCAGTGCTTCTGGCCAATATACAAGGAGGTGCTTTCGAGGATACGTA
GTGCGGTGTGCATCAAGCGAGAAGGCAGCTGGAGCAGCCATCAGCATGCG
TGAGGCGGGCGGGTGTGGCGCAGGGCAGTTGAGCGTTGTAGCAAATACGG
CGCCTGCGCTTCGGGTACTCCGAGAGTCTTCGGTATCACATCATGCGTCC
AGTGCCTTCTGGCCAATGTATGCGCAGGTGCACTCAAATGTTCAAATGTA
CTTCCAAGTAGTACTGCGTGCATCGAGCGAGAAGCGGGCGCGCGGGTCTG
CCACAGGGCAGCTGAGCATTGTGGCAGTAACACTGCGGGTATGCTCATCA
GTATCATGCGGTGCGTCCCGTGCTCTCGCTGACTTGATGGAGTATGCGCA
CAGTGCTGTCCAGCATGCTTACAAGCAGCATGTGTGGGCAAGAGAAGCGA
TATGAAGCATCCGCCTCATGCAGCAATCAGCGCTTCAAGCGCACTGGCTG
TAGAAGACGACGGGTGCTGAGCTTTCCATTCCTGTGAGTTTGCTGGCAAA
TACGTGGCGCACCTTGCCATAACTTGCAGCTCCCTGTGCCCCCGCCTTGC
ATCCATGACAGCGTACACTTGGCTATCGATGGCCGTCGCCTACTCAGAAC
GTTCGTTTGACACTGACATTTGCGCCCATGTTTGTGCTGACGCAGCAGGT
GGGAGCTTCGCCGCTCGTATCCGCAGGAGGCGCTGTCAGATGACTCTATG
TCGCAGCAGACAATTGAAGACTTCGGCTTGGCAGATGCGGTGCTGATAGT
GCAGCCATTAGAATGA back to topCoding sequence (CDS) from alignment at Contig_97:196377..200942- >mRNA_14206 ID=mRNA_14206|Name=jgi.p|Trimin1|339562|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=1317bp|location=Sequence derived from alignment at Contig_97:196377..200942- (Tribonema minus UTEX_B_3156 )
ATGGGCGCTGCAGATGTGGATGCGGCACTCGAAGGCGGAGTGGACTGGAG
GCTCAGGCAACAGCTGCTGCTGGGCTCCCTGGCGACTGTTGCGGCGGCGT
TCCTGCTGCAGAGCCTGGCGGCGCACGCGGCGCGCTGGGTGACGCGTCGC
CGCCGCGAGGCCAAGCAGGCGGCGCAGGTGCTGCAGGACCTGCGCGCCAG
GCAGCGCGCACCGCCGCCGCCGCCGCCGCTGCCGCCGCATCCGCGCAATT
CCGCGCCTTCTGCTGTGGCCGTGTTTGAGGCATTCTCGTTGAGCGCCCTG
CAAGAAAGGCACACGGCGCTCAGCAGCTCCTCACACTTGAAGGAAGGCGC
GGCAGTGTCGGCAGCAGAAACTGACGTGGCAGCGGCAGCGGCGGCAGCGG
CAACGGCAGCGGCGGCTGGCGCAGCGGCGGCGCCGTCACGGCCAGGCGAC
ATATTTGCCGTCCATGAGCGGCAGTGCGCCGATGCGCGGCAGCGCATGGC
AGAGATGGGCAGTGGTACGCCCACTGAGCATGATGATCACCAGCGCGTCA
ACGGGCAGCAGCGCTCACAACAGGGGTCTCGGGTTGACGCAGCTGGCGCT
ACGAGCCCTGCTGTGCCAGACGGGCCTGCGAACCTCAAGTTGAACTCTCC
TCCAGATTCACCCGCGGTGAAAACGTGGTCTCTGGATGGGGATATTGCCG
CTGCCCTGCAGTACGGAGCGGGGCTGGGGGGTGTTTTGAGCACTGACGCA
GGCGATGGCGATGCTCAGCAGACCGCTGCGGCGGCGCGGAGGGAGCTGCT
GCTGCAGCAGGACCTCGCATACGCTGTGTCTCTGGAGGCAGACAGACAGA
GAGACCGCGACACTGCAGCAACGCTCAGCTCGCCTGCTGGCGCGACGGAG
CGCTGCAATGAAGACGCTGAGCGCTGCCACAGCGCGCCGTCCAATGGACA
GTTACACAGTCCCGCTGCTTCAATAAGCGCCCTCCCTGCGCCGACGCTTT
CAGAGGAGCTGCCGCATGAGCCGCCGGCTAACTTCGACAACACGCACGGC
GGCGCCGCGGCGGGTACAGGCGAAGGGGAAGGGGTTGTTAGGGTCTGCTT
CAAGTGCGGGGGGGCGCGCATCGTGCGCCGCTTTGCCGCCAGCTCTCGCG
TCAGCGACCTGTACGCGTACGTGAGGCGCGCGCGTTTGGCGCAGGGCAGG
TGGGAGCTTCGCCGCTCGTATCCGCAGGAGGCGCTGTCAGATGACTCTAT
GTCGCAGCAGACAATTGAAGACTTCGGCTTGGCAGATGCGGTGCTGATAG
TGCAGCCATTAGAATGA back to top
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