mRNA_14187 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|154267
Unique NamemRNA_14187
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
BLAST of jgi.p|Trimin1|154267 vs. uniprot
Match: A0A836C6Y5_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C6Y5_9STRA)

HSP 1 Score: 622 bits (1605), Expect = 4.170e-225
Identity = 318/318 (100.00%), Postives = 318/318 (100.00%), Query Frame = 1
Query:    1 VVYQIHTQFTRITGALLPQAYRTFLQWLSVINFDLCWTLPVGCIVDLNFYQRLLVSTLAPLGVVGLLFMPRASAAVLSRDSFSATLVAQRVKSKATRLASADLQLLLVFTFIIFSGVSTVVFQTFACEEFEATGASFLRADYSISCRTPEHKAYIAYAGFMIFVYPIGIPVLYGWVLRRHRTHTAMLHPVPASSPVTHASAFLRKAYHQRADYWECMECIRRISLTGSLVFIAPGTPSQYVAACALSFGAIVIYELVQPHRLRADTCLYTLGGVITWMTMYLAALTGGPAAAATVEGNALSERGAAAGVVLIVLNVLL 954
            VVYQIHTQFTRITGALLPQAYRTFLQWLSVINFDLCWTLPVGCIVDLNFYQRLLVSTLAPLGVVGLLFMPRASAAVLSRDSFSATLVAQRVKSKATRLASADLQLLLVFTFIIFSGVSTVVFQTFACEEFEATGASFLRADYSISCRTPEHKAYIAYAGFMIFVYPIGIPVLYGWVLRRHRTHTAMLHPVPASSPVTHASAFLRKAYHQRADYWECMECIRRISLTGSLVFIAPGTPSQYVAACALSFGAIVIYELVQPHRLRADTCLYTLGGVITWMTMYLAALTGGPAAAATVEGNALSERGAAAGVVLIVLNVLL
Sbjct:    1 VVYQIHTQFTRITGALLPQAYRTFLQWLSVINFDLCWTLPVGCIVDLNFYQRLLVSTLAPLGVVGLLFMPRASAAVLSRDSFSATLVAQRVKSKATRLASADLQLLLVFTFIIFSGVSTVVFQTFACEEFEATGASFLRADYSISCRTPEHKAYIAYAGFMIFVYPIGIPVLYGWVLRRHRTHTAMLHPVPASSPVTHASAFLRKAYHQRADYWECMECIRRISLTGSLVFIAPGTPSQYVAACALSFGAIVIYELVQPHRLRADTCLYTLGGVITWMTMYLAALTGGPAAAATVEGNALSERGAAAGVVLIVLNVLL 318          
BLAST of jgi.p|Trimin1|154267 vs. uniprot
Match: A0A835YQE5_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YQE5_9STRA)

HSP 1 Score: 409 bits (1052), Expect = 2.170e-141
Identity = 204/287 (71.08%), Postives = 233/287 (81.18%), Query Frame = 1
Query:    1 VVYQIHTQFTRITGALLPQAYRTFLQWLSVINFDLCWTLPVGCIVDLNFYQRLLVSTLAPLGVVGLLFMPRASAAVLSRDSFSATLVAQRVKSKATRLASADLQLLLVFTFIIFSGVSTVVFQTFACEEFEATGASFLRADYSISCRTPEHKAYIAYAGFMIFVYPIGIPVLYGWVLRRHRTHTAMLHPVP--ASSPVTHASAFLRKAYHQRADYWECMECIRRISLTGSLVFIAPGTPSQYVAACALSFGAIVIYELVQPHRLRADTCLYTLGGVITWMTMYLAAL 855
            VVYQI TQF  ITGALLPQAY TFL+WL  +NFDL W LP+GC  DLNFYQRLL++TLAPL +  LLF PR   A++ R+  S  L A R+++KA RLA+ADL+L LVFTF+IFSGVST+V QTFACE  E TG S+LRADYS+ C+T EH AY+ YAGFMI VYPIGIP LY WVLR+HR H  +L      A SP++ ASAFLRKAY QRADYWEC+EC+RRISLTG LVFIAPGTPSQY AACALSFGAIVIYELV+PHRLRADTCLYTLGGVITW + +LAAL
Sbjct:    1 VVYQIQTQFASITGALLPQAYHTFLRWLDAVNFDLRWALPLGCAADLNFYQRLLMATLAPLAIGTLLFTPRVIVALIPRELPSRRLAA-RIRTKAARLAAADLKLFLVFTFVIFSGVSTIVLQTFACETLEGTGISYLRADYSMKCQTSEHSAYMVYAGFMILVYPIGIPALYAWVLRQHRKHADVLQHASSKAMSPLSRASAFLRKAYSQRADYWECVECVRRISLTGLLVFIAPGTPSQYAAACALSFGAIVIYELVRPHRLRADTCLYTLGGVITWGSTFLAAL 286          
BLAST of jgi.p|Trimin1|154267 vs. uniprot
Match: A0A836CAS6_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CAS6_9STRA)

HSP 1 Score: 407 bits (1046), Expect = 2.200e-139
Identity = 219/320 (68.44%), Postives = 248/320 (77.50%), Query Frame = 1
Query:    1 VVYQIHTQFTRITGALLPQAYRTFLQWLSVINFDLCWTLPVGCIVDLNFYQRLLVSTLAPLGVVGLLFMPRASAAVLSRDSFSATLVAQRVKSKATRLASADLQLLLVFTFIIFSGVSTVVFQTFACEEFEATGASFLRADYSISCRTPEHKAYIAYAGFMIFVYPIGI----PVLYGWVLRRHRTHTAMLHPVPASSPVTHASAFLRKAYHQRADYWECMECIRRISLTGSLVFIAPGTPSQYVAACALSFGAIVIYELVQPHRLRADTCLYTLGGVITWMTMYLAALTGGPAAAATVEGNALSERGAAAGVVLIVLNV 948
            VVYQI TQF  ITGALLPQAY TFL WL+ + FDL W LP+GC  DLNFYQRLLV+TLAPLGV  LLF PR  AA+L R+  S  L A R+++KA RLA+ADL+L LVFTF+IFSGVS +V QTFACE  + TG  +LRADYSI C+T EH AY+ YAGFMI VYPIGI    P   G  +   +  +      PA+   T  S+   +AY+QRADYWEC+EC+RRISLTG LVFIAPGT SQYVAACALSFGAIV+YELVQPHRLRADTCLYTLGGVITW   +LAALTGGPAAAA V+GNALSERGAAAGVVLI LNV
Sbjct:   31 VVYQIQTQFASITGALLPQAYHTFLNWLNAVGFDLRWVLPLGCAADLNFYQRLLVATLAPLGVGTLLFTPRVIAALLPRELPSGRLAA-RIRAKAARLAAADLKLFLVFTFVIFSGVSAIVLQTFACETLKGTGLRYLRADYSIRCQTSEHSAYMVYAGFMILVYPIGIQPFMPGCCGSTVSMQKYCST-----PAARARTLQSSL--QAYYQRADYWECVECVRRISLTGLLVFIAPGTSSQYVAACALSFGAIVVYELVQPHRLRADTCLYTLGGVITWGVTFLAALTGGPAAAANVDGNALSERGAAAGVVLIALNV 342          
BLAST of jgi.p|Trimin1|154267 vs. uniprot
Match: A0A836CBB8_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CBB8_9STRA)

HSP 1 Score: 254 bits (649), Expect = 4.370e-76
Identity = 149/324 (45.99%), Postives = 192/324 (59.26%), Query Frame = 1
Query:    1 VVYQIHTQFTRITGALLPQAYRTFLQWLSVINFDLCWTLPVGCIVDLNFYQRLLVSTLAPLGVVGLLFMPRASAAVLSRDSFSATLVAQRVKSKATRLASADLQLLLVFTFIIFSGVSTVVFQTFACEEFEATGASFLRADYSISCRTPEHKAYIAYAGFMIFVYPIGIPVLYGWVLRRH------RTHTAMLHPVPASSPVTHASAFLRKAYHQRADYWECMECIRRISLTGSLVFIAPGTPSQYVAACALSFGAIVIYELVQPHRLRADTCLYTLGGVITWMTMYLAALTGGPAAAATVEGNALSERGAAAGVVLIVLNVLL 954
            VV+Q+ TQF R+TG LLP  Y  FL+ L  +N DL W     C+ + NFY RLL+STLAP  V  L+F PR  A  +S    +A+    R      R+ + D+  LLVF F+IFSGVS  VFQTFAC++      ++LRADYSI C TP H+A++AYA  MI VYPIGIP L+   LRRH      R     + P P +     A AFL + Y   A Y+EC EC+RR+ LTG LVFI PGT  Q  AAC  +F   V Y+ V+PHR R+D CLY +G ++ + +M+ A L  G         N +S+  AA G +LI LNVLL
Sbjct:  304 VVFQVLTQFVRVTGVLLPLHYLQFLRGLDFVNLDLTWLTAPACVANFNFYDRLLISTLAPPVVAMLIFTPRMVAVAVSHARGAAS----RGPPLLQRVIARDMNALLVFVFLIFSGVSLTVFQTFACDD--TLPVAYLRADYSIRCYTPAHRAHMAYAAAMILVYPIGIPALFACTLRRHMLRQRQRGEALSVDPPPTTEAAASA-AFLWRPYRTNAPYYECAECVRRLLLTGVLVFITPGTAGQSAAACVFAFATSVAYDHVRPHRARSDACLYVVGYIVIFASMFTALLMQG------AYINDVSQ--AAIGGLLIALNVLL 612          
BLAST of jgi.p|Trimin1|154267 vs. uniprot
Match: A0A836CE47_9STRA (Uncharacterized protein n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A836CE47_9STRA)

HSP 1 Score: 235 bits (600), Expect = 4.690e-72
Identity = 125/288 (43.40%), Postives = 169/288 (58.68%), Query Frame = 1
Query:    1 VVYQIHTQFTRITGALLPQAYRTFLQWLSVINFDLCWTLPVGCIVDLNFYQRLLVSTLAPLGVVGLLFMPRASAAVLSRDSFSATLVAQRVKSKATRLASADLQLLLVFTFIIFSGVSTVVFQTFACEEFEATGAS---FLRADYSISCRTPEHKAYIAYAGFMIFVYPIGIPVLYGWVLRRHRTHTAMLHPVPASSPVTHASAFLRKAYHQRADYWECMECIRRISLTGSLVFIAPGTPSQYVAACALSFGAIVIYELVQPHRLRADTCLYTLGGVITWMTMYLAAL 855
            +V QI TQF  ITG  LP  Y  FLQ + +I+ DL W    GC++ L+FYQRLL++TL PLG+ G++  PRA      R +           +K  R+   DL +LLVF F+++SGVS  +FQTFAC+  E  G     +LRADY+I CRTPEH AY+ YA  M+ +YP+GIP ++ W++R           V   S +  A++FLRK Y   A YWEC EC+RR+ L G LVFI PGT  Q   AC  +  A ++YE V+PH    +  LY LG  I   +M+ + L
Sbjct:    5 IVMQILTQFVSITGVALPLQYLDFLQVMDLISLDLRWLTSPGCVLHLSFYQRLLLTTLVPLGIAGVILAPRAYRLCKPRSA----------GAKLQRVCEKDLHVLLVFAFLVYSGVSLTIFQTFACDYLEYDGPDGTWYLRADYTIQCRTPEHTAYVTYAAIMLLMYPLGIPAIFAWMIRLGAAD------VRERSALASATSFLRKPYSPHACYWECAECLRRLLLAGLLVFIMPGTAGQTAMACVFAVLAGMVYESVRPHEETGEEFLYRLGYGIIAASMFTSLL 276          
BLAST of jgi.p|Trimin1|154267 vs. uniprot
Match: A0A835YX40_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YX40_9STRA)

HSP 1 Score: 248 bits (632), Expect = 1.040e-70
Identity = 148/328 (45.12%), Postives = 192/328 (58.54%), Query Frame = 1
Query:   10 QIHTQFTRITGALLPQAYRTFLQWLSVINFDLCWTLPVGCIVDLNFYQRLLVSTLAPLGVVGLLFMPRASAAVLSRDSFSATLVAQRVKSKATRLASADLQLLLVFTFIIFSGVSTVVFQTFACEEFEATGASFLRADYSISCRTPEHKAYIAYAGFMIFVYPIGIPVLYGWVLRRHRTHTAMLHPVPASS------------PVTHASAFLRKAYHQRADYWECMECIRRISLTGSLVFIAPGTPSQYVAACALSFGAIVIYELVQPHRLRADTCLYTLGGVITWMTMYLAALTGGPAAAATVEGNALSERGA-AAGVVLIVLNVLL 954
            +I TQ+  ITG  LP AY+ FL+WL V+N D+ W L +GC   +NFYQ+LLV+TL PL +V +      +   L R S  A  + +RV   + R     L + LVFTF+IFSGVST +FQTFAC+    TG ++LRADYS+ C TP+H A+  YAG MI VYPIGIP LY WVL +H  H A+      SS              T AS+FL K Y +RA +WE +EC RR++LT  LVFI PGT  Q    C +SF  I+ Y +V PH LR D   Y LG    ++TM+   +         +E + + E G  A G VLIVLN+LL
Sbjct:  875 KIITQYVSITGVTLPLAYQQFLRWLDVVNLDVRWILSIGCFFRVNFYQKLLVTTLTPLVLVAVAV---GACWALIRYSCEAGQLRRRVMHFSAR----RLHVFLVFTFVIFSGVSTCIFQTFACDFLAGTGEAYLRADYSLRCYTPQHDAFRIYAGAMILVYPIGIPALYAWVLWQH--HRALEERRSGSSGSSAQEADLGAAATTEASSFLWKPYKERAYFWETIECFRRLALTSLLVFIVPGTAGQSAVGCLMSFFTIMAYGMVLPHHLRGDHWQYALGATTIFITMFTGFV---------LENDYMQETGQDAVGGVLIVLNLLL 1184          
BLAST of jgi.p|Trimin1|154267 vs. uniprot
Match: A0A835Z2L6_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z2L6_9STRA)

HSP 1 Score: 241 bits (614), Expect = 7.680e-69
Identity = 127/288 (44.10%), Postives = 170/288 (59.03%), Query Frame = 1
Query:    1 VVYQIHTQFTRITGALLPQAYRTFLQWLSVINFDLCWTLPVGCIVDLNFYQRLLVSTLAPLGVVGLLFMPRASAAVLSRDSFSATLVAQRVKSKATRLASADLQLLLVFTFIIFSGVSTVVFQTFACEEFEATGAS---FLRADYSISCRTPEHKAYIAYAGFMIFVYPIGIPVLYGWVLRRHRTHTAMLHPVPASSPVTHASAFLRKAYHQRADYWECMECIRRISLTGSLVFIAPGTPSQYVAACALSFGAIVIYELVQPHRLRADTCLYTLGGVITWMTMYLAAL 855
            +V QI TQF  ITG  LP  Y  FLQ + +I+ DL W    GC++ L+FYQRLL++TL PLG+ G++  PRA      R +           +K  R+   DL +LLVF F+++SGVS  +FQTFAC+  E  G     +LRADY+I CRTPEH AY+ YA  M+ VYP+GIP ++ W++R           V   S +  A++FLRK Y  +  YWEC EC+RR+ L G LVFI PGT  Q   AC  +  A V+YE V+PH  R +  LY LG  I   +M+ + L
Sbjct:  648 IVMQILTQFVSITGVALPLQYLDFLQVMDLISLDLRWLTSPGCVLHLSFYQRLLLTTLVPLGIAGVILAPRAYRRCRPRSA----------GAKLQRVCEQDLHVLLVFAFLVYSGVSLTIFQTFACDYLEYDGPDGTWYLRADYTIQCRTPEHTAYVTYAAIMLLVYPLGIPAIFAWMIRLGAAD------VRERSALASATSFLRKPYSPQTSYWECAECLRRLLLAGLLVFIMPGTAGQTAVACVFASLAGVVYESVRPHEERGEESLYRLGYSIIAASMFTSLL 919          
BLAST of jgi.p|Trimin1|154267 vs. uniprot
Match: A0A835ZAG3_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZAG3_9STRA)

HSP 1 Score: 230 bits (586), Expect = 1.500e-68
Identity = 143/323 (44.27%), Postives = 181/323 (56.04%), Query Frame = 1
Query:    1 VVYQIHTQFTRITGALLPQAYRTFLQWLSVINFDLCWTLPVGCIVDLNFYQRLLVSTLAPLGVVGLLFMPRASAAVLSRDSFSATLVAQRVKSKATRLASADLQLLLVFTFIIFSGVSTVVFQTFACEEF-----EATGASFLRADYSISCRTPEHKAYIAYAGFMIFVYPIGIPVLYGWVLRRHRTHTAMLHPVPASSPVTHASAFLRKAYHQRADYWECMECIRRISLTGSLVFIAPGTPSQYVAACALSFGAIVIYELVQPHRLRADTCLYTLGGVITWMTMYLAALTGGPAAAATVEGNALSERGAAAGVVLIVLNVLL 954
            +V Q+ TQF  ITG  +P  Y  FL  + V+  DL W    GC+V LNFYQRL +STL PLG+  LL  PRA     +R   S       V  K  R    DL +LLVF F+IFSGVS  VFQTF CE       +A G S+L ADYS+ C TP H AY  YA  M+ VYPIGIP ++  ++R+    T+     PA   +T A++FLRK Y   A YWEC EC+RR+ LT  L+FI PGT  Q   AC  +    ++YE  +PHR R D  LY LG  I   TM+ + L            +A S+  +  GV+L+VLNVLL
Sbjct:  116 IVLQVLTQFVSITGVPVPSVYLEFLHVVDVLTLDLRWLPSAGCLVRLNFYQRLCLSTLVPLGIAVLLLAPRAYLWCRTRSGRSF------VGVKLRRFVEKDLNILLVFAFLIFSGVSLTVFQTFVCETLNYDGPQAGGTSYLLADYSLECGTPRHTAYTVYAVVMVAVYPIGIPAMFAVIIRQG-VRTSGDGDQPAM--LTAATSFLRKPYAASARYWECAECLRRLMLTTLLMFIMPGTAGQTAVACVFALFTGIVYESFRPHRERGDEMLYRLGYSIISATMFTSLLM------QVKYVDAYSQ--SVIGVLLVVLNVLL 421          
BLAST of jgi.p|Trimin1|154267 vs. uniprot
Match: A0A835YNB8_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YNB8_9STRA)

HSP 1 Score: 225 bits (573), Expect = 2.620e-68
Identity = 126/293 (43.00%), Postives = 170/293 (58.02%), Query Frame = 1
Query:    1 VVYQIHTQFTRITGALLPQAYRTFLQWLSVINFDLCWTLPVGCIVDLNFYQRLLVSTLAPLGVVGLLFMPRASAAVLSRDSFSATLVAQRVKSKATRLASADLQLLLVFTFIIFSGVSTVVFQTFACEEF--EATGASFLRADYSISCRTPE--HKAYIAYAGFMIFVYPIGIPVLYGWVL----RRHRTHTAMLHPVPASSPVTHASAFLRKAYHQRADYWECMECIRRISLTGSLVFIAPGTPSQYVAACALSFGAIVIYELVQPHRLRADTCLYTLGGVITWMTMYLAAL 855
            +V Q+ TQ+  ITG  LP  Y  FL+ +  ++ D+ W    GC  D++FY RLL++TLAPL +  L+F PR     +SR           V  K  ++ + D+   LVFTF+IFSGVS  VF+TFAC++   E TG  +L ADYS+ C   E  HK Y  YAGFM+ VYP+GIP++Y  +L     R R H          S +T AS+FL  +Y  RA YWE  EC+RR+ L+G LVFI PGTP Q   AC  +F   ++YE ++PH    D  LYTLG VI   +M+ + L
Sbjct:    6 IVLQVLTQYISITGIALPLQYLNFLRAVDFMSLDMRWLTSPGCAADIDFYGRLLIATLAPLVITALIFSPRLYLCFISRRR-------PAVAPKLRQIVTRDVNAFLVFTFLIFSGVSLTVFETFACDKELKEFTGNIYLHADYSLQCSDDEGLHKKYSIYAGFMVVVYPVGIPLMYAAILWRVAARQREHGQQ------PSRLTSASSFLWSSYEGRAYYWESAECVRRLMLSGLLVFIMPGTPGQSAVACIFAFVTTMVYEKIRPHHDSMDMWLYTLGCVIVVFSMFTSLL 285          
BLAST of jgi.p|Trimin1|154267 vs. uniprot
Match: A0A836CA63_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CA63_9STRA)

HSP 1 Score: 239 bits (611), Expect = 2.820e-68
Identity = 126/288 (43.75%), Postives = 170/288 (59.03%), Query Frame = 1
Query:    1 VVYQIHTQFTRITGALLPQAYRTFLQWLSVINFDLCWTLPVGCIVDLNFYQRLLVSTLAPLGVVGLLFMPRASAAVLSRDSFSATLVAQRVKSKATRLASADLQLLLVFTFIIFSGVSTVVFQTFACEEFEATGAS---FLRADYSISCRTPEHKAYIAYAGFMIFVYPIGIPVLYGWVLRRHRTHTAMLHPVPASSPVTHASAFLRKAYHQRADYWECMECIRRISLTGSLVFIAPGTPSQYVAACALSFGAIVIYELVQPHRLRADTCLYTLGGVITWMTMYLAAL 855
            +V QI TQF  ITG  LP  Y  FLQ + +I+ DL W    GC++ L+FYQRLL++TL PLG+ G++  PRA      R +           +K  R+   DL +LLVF F+++SGVS  +FQTFAC+  E  G     +LRADY+I CRTPEH AY+ YA  M+ VYP+GIP ++ W++R           V   S +  A++FLRK Y  +  YWEC EC+RR+ L G LVFI PGT  Q   AC  +  A ++YE V+PH    + CLY LG  I   +M+ + L
Sbjct:  691 IVMQILTQFVSITGVALPLQYLDFLQVMDLISLDLRWLTSPGCVLHLSFYQRLLLTTLVPLGIAGVILAPRAYRRCRPRSA----------GAKLQRVCEQDLHVLLVFAFLVYSGVSLTIFQTFACDYLEYDGPDGTWYLRADYTIQCRTPEHTAYVTYAVIMLLVYPLGIPAIFAWMIRLGAAD------VRERSALASATSFLRKPYSPQTSYWECAECLRRLLLAGLLVFIMPGTAGQTAVACVFASLAGMVYESVRPHEEAGEECLYRLGYGIIAASMFTSLL 962          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|154267 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A836C6Y5_9STRA4.170e-225100.00Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
A0A835YQE5_9STRA2.170e-14171.08Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
A0A836CAS6_9STRA2.200e-13968.44Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A836CBB8_9STRA4.370e-7645.99Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A836CE47_9STRA4.690e-7243.40Uncharacterized protein n=2 Tax=Tribonema minus Ta... [more]
A0A835YX40_9STRA1.040e-7045.12Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835Z2L6_9STRA7.680e-6944.10Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835ZAG3_9STRA1.500e-6844.27Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835YNB8_9STRA2.620e-6843.00Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
A0A836CA63_9STRA2.820e-6843.75Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_97contigContig_97:12471..13625 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|154267|gw1.97.71.1
Max annot lvl2759|Eukaryota
EggNOG OGs2BFIX@1|root,2S176@2759|Eukaryota
Evalue4.03e-52
Seed ortholog2880.D7G301
Hectar predicted targeting categoryother localisation
TranscriptId154589
TrackFilteredModels1
ProteinId154267
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|154267gene_14187Tribonema minus UTEX_B_3156 geneContig_97 12471..13625 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_14187_1exon_14187_1Tribonema minus UTEX_B_3156 exonContig_97 12471..13035 +
exon_14187_2exon_14187_2Tribonema minus UTEX_B_3156 exonContig_97 13237..13625 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_14187CDS_14187Tribonema minus UTEX_B_3156 CDSContig_97 12471..13035 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|154267Trimin1|154267|gw1.97.71.1Tribonema minus UTEX_B_3156 polypeptideContig_97 12471..13625 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_14187 ID=mRNA_14187|Name=jgi.p|Trimin1|154267|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=954bp|location=Sequence derived from alignment at Contig_97:12471..13625+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
GTCGTCTACCAGATTCACACGCAGTTCACCAGGATAACTGGGGCCCTGCT
CCCTCAGGCATACCGCACATTTCTTCAGTGGCTCAGCGTCATAAACTTTG
ACCTGTGCTGGACGCTGCCAGTTGGGTGCATTGTAGATTTGAACTTTTAC
CAGCGGCTTCTCGTTTCCACGCTGGCGCCGCTGGGCGTTGTCGGGTTGTT
GTTTATGCCGCGGGCATCAGCCGCGGTGCTATCCCGTGACTCTTTTTCTG
CCACATTGGTGGCACAACGAGTCAAGAGTAAGGCAACACGATTAGCCAGC
GCTGACCTCCAGCTGCTGTTGGTATTTACTTTTATCATATTTTCAGGGGT
GTCAACAGTGGTTTTCCAGACTTTCGCCTGTGAAGAGTTTGAGGCGACAG
GGGCTAGCTTTCTGCGGGCAGACTACAGTATATCGTGCCGCACACCTGAG
CACAAGGCATACATTGCATACGCAGGCTTCATGATATTTGTGTACCCCAT
TGGCATACCAGTTCTCTATGGCTGGGTGCTGCGGCGGCACCGCACACACA
CAGCAATGCTGCACCCGGTGCCTGCTTCATCCCCAGTGACGCACGCATCT
GCGTTCCTGCGCAAGGCGTACCACCAGCGTGCCGACTATTGGGAGTGCAT
GGAGTGCATCCGCCGCATCTCACTCACCGGCTCGCTCGTCTTCATCGCAC
CGGGGACGCCATCGCAGTATGTGGCGGCTTGCGCCCTGTCGTTCGGCGCA
ATCGTGATTTATGAGCTGGTGCAGCCGCACCGCTTGCGCGCTGACACGTG
TCTGTACACGCTGGGCGGCGTCATCACCTGGATGACCATGTACCTGGCAG
CCCTCACTGGGGGGCCTGCGGCAGCGGCCACTGTGGAGGGCAACGCTTTG
AGTGAGCGCGGCGCAGCCGCTGGAGTCGTGCTCATTGTGCTGAACGTGCT
GCTG
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protein sequence of jgi.p|Trimin1|154267

>Trimin1|154267|gw1.97.71.1 ID=Trimin1|154267|gw1.97.71.1|Name=jgi.p|Trimin1|154267|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=318bp
VVYQIHTQFTRITGALLPQAYRTFLQWLSVINFDLCWTLPVGCIVDLNFY
QRLLVSTLAPLGVVGLLFMPRASAAVLSRDSFSATLVAQRVKSKATRLAS
ADLQLLLVFTFIIFSGVSTVVFQTFACEEFEATGASFLRADYSISCRTPE
HKAYIAYAGFMIFVYPIGIPVLYGWVLRRHRTHTAMLHPVPASSPVTHAS
AFLRKAYHQRADYWECMECIRRISLTGSLVFIAPGTPSQYVAACALSFGA
IVIYELVQPHRLRADTCLYTLGGVITWMTMYLAALTGGPAAAATVEGNAL
SERGAAAGVVLIVLNVLL
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mRNA from alignment at Contig_97:12471..13625+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_14187 ID=mRNA_14187|Name=jgi.p|Trimin1|154267|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1155bp|location=Sequence derived from alignment at Contig_97:12471..13625+ (Tribonema minus UTEX_B_3156 )
GTCGTCTACCAGATTCACACGCAGTTCACCAGGATAACTGGGGCCCTGCT CCCTCAGGCATACCGCACATTTCTTCAGTGGCTCAGCGTCATAAACTTTG ACCTGTGCTGGACGCTGCCAGTTGGGTGCATTGTAGATTTGAACTTTTAC CAGCGGCTTCTCGTTTCCACGCTGGCGCCGCTGGGCGTTGTCGGGTTGTT GTTTATGCCGCGGGCATCAGCCGCGGTGCTATCCCGTGACTCTTTTTCTG CCACATTGGTGGCACAACGAGTCAAGAGTAAGGCAACACGATTAGCCAGC GCTGACCTCCAGCTGCTGTTGGTATTTACTTTTATCATATTTTCAGGGGT GTCAACAGTGGTTTTCCAGACTTTCGCCTGTGAAGAGTTTGAGGCGACAG GGGCTAGCTTTCTGCGGGCAGACTACAGTATATCGTGCCGCACACCTGAG CACAAGGCATACATTGCATACGCAGGCTTCATGATATTTGTGTACCCCAT TGGCATACCAGTTCTCTATGGCTGGGTGCTGCGGCGGCACCGCACACACA CAGCAATGCTGCACCGTGACCGCGAGGAGGTGCAGCACGCTTCTGTATTG CTGCCAAGCAAAGAGATGCGCGAGAGAATTGCCATAGCAGCAGCGGCTGA CGAGGCGGCAGCACAGGCGGCAGGGCAGTGGGTGCCCGCAAGTGTCAGAG AAGCACCGTCCCTTTCTGCGCGTACTTCACAGAGTGCAGCTGCTGCTATG ACAGCAATACCTCAAGCGGTGCCTGCTTCATCCCCAGTGACGCACGCATC TGCGTTCCTGCGCAAGGCGTACCACCAGCGTGCCGACTATTGGGAGTGCA TGGAGTGCATCCGCCGCATCTCACTCACCGGCTCGCTCGTCTTCATCGCA CCGGGGACGCCATCGCAGTATGTGGCGGCTTGCGCCCTGTCGTTCGGCGC AATCGTGATTTATGAGCTGGTGCAGCCGCACCGCTTGCGCGCTGACACGT GTCTGTACACGCTGGGCGGCGTCATCACCTGGATGACCATGTACCTGGCA GCCCTCACTGGGGGGCCTGCGGCAGCGGCCACTGTGGAGGGCAACGCTTT GAGTGAGCGCGGCGCAGCCGCTGGAGTCGTGCTCATTGTGCTGAACGTGC TGCTG
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Coding sequence (CDS) from alignment at Contig_97:12471..13625+

>mRNA_14187 ID=mRNA_14187|Name=jgi.p|Trimin1|154267|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=954bp|location=Sequence derived from alignment at Contig_97:12471..13625+ (Tribonema minus UTEX_B_3156 )
GTCGTCTACCAGATTCACACGCAGTTCACCAGGATAACTGGGGCCCTGCT
CCCTCAGGCATACCGCACATTTCTTCAGTGGCTCAGCGTCATAAACTTTG
ACCTGTGCTGGACGCTGCCAGTTGGGTGCATTGTAGATTTGAACTTTTAC
CAGCGGCTTCTCGTTTCCACGCTGGCGCCGCTGGGCGTTGTCGGGTTGTT
GTTTATGCCGCGGGCATCAGCCGCGGTGCTATCCCGTGACTCTTTTTCTG
CCACATTGGTGGCACAACGAGTCAAGAGTAAGGCAACACGATTAGCCAGC
GCTGACCTCCAGCTGCTGTTGGTATTTACTTTTATCATATTTTCAGGGGT
GTCAACAGTGGTTTTCCAGACTTTCGCCTGTGAAGAGTTTGAGGCGACAG
GGGCTAGCTTTCTGCGGGCAGACTACAGTATATCGTGCCGCACACCTGAG
CACAAGGCATACATTGCATACGCAGGCTTCATGATATTTGTGTACCCCAT
TGGCATACCAGTTCTCTATGGCTGGGTGCTGCGGCGGCACCGCACACACA
CAGCAATGCTGCACCCGGTGCCTGCTTCATCCCCAGTGACGCACGCATCT
GCGTTCCTGCGCAAGGCGTACCACCAGCGTGCCGACTATTGGGAGTGCAT
GGAGTGCATCCGCCGCATCTCACTCACCGGCTCGCTCGTCTTCATCGCAC
CGGGGACGCCATCGCAGTATGTGGCGGCTTGCGCCCTGTCGTTCGGCGCA
ATCGTGATTTATGAGCTGGTGCAGCCGCACCGCTTGCGCGCTGACACGTG
TCTGTACACGCTGGGCGGCGTCATCACCTGGATGACCATGTACCTGGCAG
CCCTCACTGGGGGGCCTGCGGCAGCGGCCACTGTGGAGGGCAACGCTTTG
AGTGAGCGCGGCGCAGCCGCTGGAGTCGTGCTCATTGTGCTGAACGTGCT
GCTG
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